Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007898

Physical Location & Seq

Genomic Coordinates Reverse (-)

67084345 .. 67087592

Gene Structure 3248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAAGTGAACACTTCACACTCAAACTCAGGGCTGGGGCTGGGGCTGGACTTGCTCTCAAAGAAGCCATACTCACCTCCTTCTTGGGCATCCCACATCAGCCCCATCCCCTCTCACACCTTCTCTCTCGGTCACCTTCCCACTCCAATCCACAAATGGAATCTTCCTAATTTGCCCAACAACACCGAGGTCTGGTTGAAGCGCGATGATCTCTCGGGGATGCAGCTCAGCGGCAACAAAGTCCGGAAATTGGAATTCCTGATGGCAGATGCCGTCCAAAAGGGTGCTGATTGTATCATAACCATAGGGGCATCCAAAGTAACCACTGTCCTTCTTGTGGATCAAGATCCCGGACTTACCGGAAACCTTTTGGTTGAGCGTTTAGTTGGAGCTCATATTGAATTGATTTCAAAAGAAGAGTATGCAAAAATTGGGAGTGTGGCTCTTACTAATACCTTAAAGGAAAGACTGATAAAAGAAGGAAGAAGGCCATATGTCATTCCTGTTGGTGGATCAGACTCCCTCGGAACTTGGGGATATATTCAAGCAATTCGAGAGATTGAGCAGCAGCTTCACAGTGGGGCTGGCAAAGTAAAGTTTGATGATATTGTTGTAGCATTTTTGAAATGTGGATATGGTCATGCTGTTGTGAACGATGAGTACATTCATGGGTACTTTGACTTTTTAGGGTCTTATGCCAAGGGTTTAGGCTATGCAATCAACACTGCTGAGGAGCTTACTTTTGTGAAAGAGATTGCTGCAACCACGGGTGGCAAAGCTGCTTATGGATTGCTGAAAGACATGGCTGAGAATCCAAAGAAGTGGGAAGGAAGAAAGATCCTCTTCATACACACAGGTGGGCTGCTTGGGTTGTTTGACAAGGTTGAGCAGATTGCTCCATCATTGGGAAATTACAGCCGGATGGATGTCTGCGAATCTGTTCCACGGAAGGATGGTATCGGGAAAATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009507 GO:0009536 GO:0009692 GO:0009693 GO:0009987 GO:0010035 GO:0010038 GO:0010817 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019447 GO:0019478 GO:0019752 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044273 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046416 GO:0046438 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

324

Amino Acids

35.36

Weight (kDa)

7.15

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	42 - 207	1.2e-06	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48420 AT1G48420 AT1G48420
fragaria_vesca	FvH4_5g18020 FvH4_5g18030 FvH4_5g18030 FvH4_5g18030
malus_domestica	MD06G1235700.v1.1 MD14G1242800.v1.1
prunus_persica	Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.8G055600_v2.0.a1
pyrus_communis	pycom14g20400
rosa_chinensis	RchiOBHm_Chr7g0177581
rosa_laevigata	RLG00000005524
rosa_roxburghii	Rroxscaffold_3G00275740
rosa_rugosa	Rorug06G0407700
rosa_samantha	Rh7AG006800 Rh7BG006800 Rh7CG007300 Rh7DG006800
rosa_wichuraiana	Rw7G000580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	243
AciI	CCGC	1 cut(s)	231
AclWI	GGATC	4 cut(s)	341, 348, 520, 832
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	2 cut(s)	662, 674
AfiI	CCNNNNNNNGG	5 cut(s)	192, 250, 337, 509, 905
AgsI	TTSAA	5 cut(s)	199, 401, 411, 545, 625
AleI	CACNNNNGTG	1 cut(s)	855
AluBI	AGCT	5 cut(s)	226, 392, 571, 736, 779
AluI	AGCT	5 cut(s)	226, 392, 571, 736, 779
Alw21I	GWGCWC	1 cut(s)	394
AlwI	GGATC	4 cut(s)	341, 348, 520, 832
Ama87I	CYCGRG	1 cut(s)	214
Aor13HI	TCCGGA	1 cut(s)	243
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	6 cut(s)	223, 565, 568, 758, 779, 862
ApoI	RAATTY	1 cut(s)	254
Asp700I	GAANNNNTTC	2 cut(s)	939, 968
AspLEI	GCGC	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	66, 125
AvaI	CYCGRG	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	729
BbvI	GCAGC	6 cut(s)	235, 577, 580, 745, 766, 849
BccI	CCATC	5 cut(s)	113, 256, 907, 916, 947
BceAI	ACGGC	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	351
BfaI	CTAG	1 cut(s)	973
BisI	GCNGC	7 cut(s)	224, 232, 566, 569, 759, 780, 863
BlpI	GCTNAGC	1 cut(s)	227
BlsI	GCNGC	7 cut(s)	225, 233, 567, 570, 760, 781, 864
Bme1390I	CCNGG	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	4 cut(s)	98, 210, 259, 320
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
Bpu10I	CCTNAGC	1 cut(s)	729
Bpu1102I	GCTNAGC	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	5 cut(s)	186, 523, 699, 765, 944
BsaWI	WCCGGW	2 cut(s)	243, 359
Bsc4I	CCNNNNNNNGG	5 cut(s)	192, 250, 337, 509, 905
Bse8I	GATNNNNATC	1 cut(s)	345
BseAI	TCCGGA	1 cut(s)	243
BseDI	CCNNGG	5 cut(s)	186, 523, 699, 765, 944
BseGI	GGATG	7 cut(s)	89, 105, 225, 311, 927, 931, 958
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	5 cut(s)	192, 250, 337, 509, 905
BseMII	CTCAG	4 cut(s)	42, 241, 720, 798
BseRI	GAGGAG	1 cut(s)	746
BseXI	GCAGC	6 cut(s)	235, 577, 580, 745, 766, 849
BseYI	CCCAGC	2 cut(s)	34, 40
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	394
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	4 cut(s)	244, 351, 360, 919
BslI	CCNNNNNNNGG	5 cut(s)	192, 250, 337, 509, 905
BsnI	GGCC	1 cut(s)	490
BsoBI	CYCGRG	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	243
Bsp143I	GATC	5 cut(s)	208, 340, 346, 512, 837
Bsp1720I	GCTNAGC	1 cut(s)	227
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	4 cut(s)	41, 240, 721, 799
BspEI	TCCGGA	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	204
BspPI	GGATC	4 cut(s)	341, 348, 520, 832
BssECI	CCNNGG	5 cut(s)	186, 523, 699, 765, 944
BssMI	GATC	5 cut(s)	208, 340, 346, 512, 837
BssT1I	CCWWGG	1 cut(s)	699
Bst4CI	ACNGT	2 cut(s)	328, 578
Bst6I	CTCTTC	2 cut(s)	411, 848
BstC8I	GCNNGC	1 cut(s)	586
BstDEI	CTNAG	4 cut(s)	28, 227, 729, 807
BstDSI	CCRYGG	2 cut(s)	765, 944
BstEII	GGTNACC	1 cut(s)	131
BstF5I	GGATG	7 cut(s)	89, 105, 225, 311, 927, 931, 958
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	5 cut(s)	211, 343, 349, 515, 840
BstMBI	GATC	5 cut(s)	208, 340, 346, 512, 837
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstPI	GGTNACC	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	349
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	6 cut(s)	235, 577, 580, 745, 766, 849
BstX2I	RGATCY	2 cut(s)	346, 837
BstXI	CCANNNNNNTGG	1 cut(s)	822
BstYI	RGATCY	2 cut(s)	346, 837
BsuRI	GGCC	1 cut(s)	490
BtgI	CCRYGG	2 cut(s)	765, 944
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	7 cut(s)	89, 105, 225, 311, 927, 931, 958
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	3 cut(s)	324, 583, 723
Cac8I	GCNNGC	1 cut(s)	586
CfoI	GCGC	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	661, 673
CviAII	CATG	3 cut(s)	641, 668, 802
CviQI	GTAC	2 cut(s)	661, 673
DdeI	CTNAG	4 cut(s)	28, 227, 729, 807
DpnI	GATC	5 cut(s)	210, 342, 348, 514, 839
DpnII	GATC	5 cut(s)	208, 340, 346, 512, 837
Eam1104I	CTCTTC	2 cut(s)	411, 848
EarI	CTCTTC	2 cut(s)	411, 848
Ecl136II	GAGCTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	699
Eco24I	GRGCYC	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	214
Eco91I	GGTNACC	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	392
EcoO65I	GGTNACC	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	699
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	699
FaeI	CATG	3 cut(s)	644, 671, 805
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FatI	CATG	3 cut(s)	640, 667, 801
FauNDI	CATATG	1 cut(s)	493
Fnu4HI	GCNGC	7 cut(s)	224, 232, 566, 569, 759, 780, 863
FokI	GGATG	7 cut(s)	76, 92, 232, 298, 934, 938, 965
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	7 cut(s)	224, 232, 566, 569, 759, 780, 863
FspBI	CTAG	1 cut(s)	973
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	7 cut(s)	224, 232, 566, 569, 759, 780, 863
GsaI	CCCAGC	2 cut(s)	38, 44
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	4 cut(s)	244, 351, 360, 919
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	3 cut(s)	644, 671, 805
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	4 cut(s)	160, 518, 811, 935
HpaII	CCGG	4 cut(s)	244, 351, 360, 919
HphI	GGTGA	2 cut(s)	66, 125
Hpy166II	GTNNAC	2 cut(s)	10, 652
Hpy188I	TCNGA	2 cut(s)	517, 527
Hpy188III	TCNNGA	5 cut(s)	244, 259, 344, 554, 961
Hpy8I	GTNNAC	2 cut(s)	10, 652
HpyAV	CCTTC	8 cut(s)	90, 130, 146, 341, 473, 480, 821, 943
HpyCH4III	ACNGT	2 cut(s)	328, 578
HpyCH4V	TGCA	4 cut(s)	223, 425, 716, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	4 cut(s)	28, 227, 729, 807
Hsp92II	CATG	3 cut(s)	644, 671, 805
HspAI	GCGC	1 cut(s)	202
Kpn2I	TCCGGA	1 cut(s)	243
Kzo9I	GATC	5 cut(s)	208, 340, 346, 512, 837
LmnI	GCTCC	3 cut(s)	389, 733, 901
Lsp1109I	GCAGC	6 cut(s)	235, 577, 580, 745, 766, 849
LweI	GCATC	4 cut(s)	98, 210, 259, 320
MaeI	CTAG	1 cut(s)	973
MaeIII	GTNAC	2 cut(s)	131, 319
MalI	GATC	5 cut(s)	210, 342, 348, 514, 839
MboI	GATC	5 cut(s)	208, 340, 346, 512, 837
MboII	GAAGA	5 cut(s)	155, 428, 495, 835, 843
MflI	RGATCY	2 cut(s)	346, 837
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	7 cut(s)	169, 248, 254, 401, 429, 549, 910
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	6 cut(s)	87, 121, 181, 533, 724, 851
MroI	TCCGGA	1 cut(s)	243
MroXI	GAANNNNTTC	2 cut(s)	939, 968
MseI	TTAA	1 cut(s)	458
MslI	CAYNNNNRTG	1 cut(s)	855
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	4 cut(s)	244, 351, 360, 919
MspR9I	CCNGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	351
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	5 cut(s)	208, 340, 346, 512, 837
NlaIII	CATG	3 cut(s)	644, 671, 805
NmuCI	GTSAC	1 cut(s)	131
OliI	CACNNNNGTG	1 cut(s)	855
PdmI	GAANNNNTTC	2 cut(s)	939, 968
PfeI	GAWTC	3 cut(s)	160, 811, 935
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	7 cut(s)	225, 233, 567, 570, 760, 781, 864
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
Psp124BI	GAGCTC	1 cut(s)	394
PspEI	GGTNACC	1 cut(s)	131
PspFI	CCCAGC	2 cut(s)	34, 40
PsrI	GAACNNNNNNTAC	2 cut(s)	644, 676
PsuI	RGATCY	2 cut(s)	346, 837
RsaI	GTAC	2 cut(s)	662, 674
RsaNI	GTAC	2 cut(s)	661, 673
RseI	CAYNNNNRTG	1 cut(s)	855
SacI	GAGCTC	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	7 cut(s)	224, 232, 566, 569, 759, 780, 863
Sau3AI	GATC	5 cut(s)	208, 340, 346, 512, 837
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	4 cut(s)	98, 210, 259, 320
SmiMI	CAYNNNNRTG	1 cut(s)	855
Sse9I	AATT	7 cut(s)	169, 248, 254, 401, 429, 549, 910
SsiI	CCGC	1 cut(s)	231
SspMI	CTAG	1 cut(s)	973
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	2 cut(s)	328, 578
TaqI	TCGA	1 cut(s)	553
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	7 cut(s)	169, 248, 254, 401, 429, 549, 910
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	3 cut(s)	160, 811, 935
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	3 cut(s)	331, 583, 730
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	6 cut(s)	223, 565, 568, 758, 779, 862
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	656, 835
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	3 cut(s)	331, 583, 730
XapI	RAATTY	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	153
XmnI	GAANNNNTTC	2 cut(s)	939, 968
XspI	CTAG	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.