Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007898

Physical Location & Seq

Genomic Coordinates Forward (+)

553198 .. 558155

Gene Structure 4958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG007300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGTTGTGTTGCAGCGGCAGCTTCCGAATTCCTCCTCAGCTTACCAAAAACCAAGCCCTCCTCATTTTCCCTTCTCGCCCTGCTGCACTCACTCTCACCCAACCCAATAACAAACACAAACACAAAGCCTTTCAGATTCACTCACTAATGGAAGTGAACACTTCACACTCAAACTCAGGGCTGGGGCTGGGGCTGGACTTCCTCTCAAAGAAGCCATACTCACCTCCTTCTTGGGCATCCCACATCAGCCCCATCCCCTCTCACACCTTCTCTCTCGGTCACCTTCCCACTCCAATCCACAAATGGAATCTTCCTAATTTGCCCAACAACACCGAGGTCTGGTTGAAGCGAGATGATCTCTCGGGGATGCAGCTCAGCGGCAACAAAGTCCGGAAATTGGAATTCCTGATGGCAGATGCCGTCCAAAAGGGTGCTGATTGTATCATAACCATAGGGGGCATCCAAAGTAACCACTGTCGTGCAACTGCTGTGGCTGCAAAGTATCTCAATCTCGACTCTTATCTCATTTTACGTACCTCTAAGGTTCTTGTGGATCAAGATCCCGGACTTACCGGAAACCTTTTGGTTGAGCGTTTAGTTGGAGCTCATATTGAATTGATTTCAAAAGAAGAGTATGCAAAAATTGGGAGTGTGGCTCTTACTAATACCTTAAAGGAAAGACTGATAAAAGAAGGAAGAAGGCCATATGTCATTCCTGTTGGTGGATCAGACTCCCTCGGAACTTGGGGATATATTCAAGCAATTCGAGAGATTGAGCAGCAGCTTCACAGTGGGGCTGGCAAAGTAAAGTTTGATGATATTGTTGTAGCATGTGGAAGTGGCGGTACAATTGCTGGTTTGTCATTGGGGTCTCGGCTGAGTTCATTGAAGGCAAAAGTTCATGCATTCTCTGTCTGTGATGACCCTGATTACTTCTACGACTTTGTTCAAGGCCTACTTGATGGACTTAAAGCAGGCGTTGATTCACGTAATATTGTTAACATTCAAAATGCCAAGGGTTTAGGCTATGCAATTAACACTGCTGAGGAGCTTACTTTTGTGAAGGAGATTGCCGCTACCACTGGGGTTATCTTGGATCCAGTTTACAGTGGCAAAGCTGCTTATGGATTGCTGAAAGACATGGCTGAGAATCCAAAGAAGTGGGAAGGAAGAAAGATCCTCTTCATACACACAGGAGGGCTGCTCGGATTGTTTGACAAGGTTGAGCAGATTGCTCCATCATTGGGAAAATACAGCCGGATGGATGTCTGCGAATCTGTTTCACGGAAGGATGGTATCGGGAAAATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009507 GO:0009536 GO:0009692 GO:0009693 GO:0009987 GO:0010035 GO:0010038 GO:0010817 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019447 GO:0019478 GO:0019752 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044273 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046416 GO:0046438 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

437

Amino Acids

47.53

Weight (kDa)

9.03

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	91 - 399	2.9e-35	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48420 AT1G48420 AT1G48420
fragaria_vesca	FvH4_5g18020 FvH4_5g18030 FvH4_5g18030 FvH4_5g18030
malus_domestica	MD06G1235700.v1.1 MD14G1242800.v1.1
prunus_persica	Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.8G055600_v2.0.a1
pyrus_communis	pycom14g20400
rosa_chinensis	RchiOBHm_Chr7g0177581
rosa_laevigata	RLG00000005524
rosa_roxburghii	Rroxscaffold_3G00275740
rosa_rugosa	Rorug06G0407700
rosa_samantha	Rh7AG006800 Rh7BG006800 Rh7CG007300 Rh7DG006800
rosa_wichuraiana	Rw7G000580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	390
AciI	CCGC	4 cut(s)	15, 378, 843, 1074
AclWI	GGATC	6 cut(s)	554, 561, 733, 1091, 1104, 1171
AcsI	RAATTY	2 cut(s)	27, 401
AfaI	GTAC	2 cut(s)	535, 847
AfiI	CCNNNNNNNGG	4 cut(s)	339, 397, 722, 1244
AgsI	TTSAA	7 cut(s)	346, 614, 624, 758, 889, 950, 1007
AleI	CACNNNNGTG	1 cut(s)	477
AluBI	AGCT	7 cut(s)	21, 40, 373, 605, 784, 1051, 1118
AluI	AGCT	7 cut(s)	21, 40, 373, 605, 784, 1051, 1118
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	1 cut(s)	876
AlwI	GGATC	6 cut(s)	554, 561, 733, 1091, 1104, 1171
Ama87I	CYCGRG	1 cut(s)	361
Aor13HI	TCCGGA	1 cut(s)	390
AoxI	GGCC	2 cut(s)	701, 952
ApeKI	GCWGC	9 cut(s)	12, 18, 83, 370, 494, 778, 781, 1118, 1201
ApoI	RAATTY	2 cut(s)	27, 401
Asp700I	GAANNNNTTC	1 cut(s)	1307
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	3 cut(s)	88, 213, 272
AvaI	CYCGRG	1 cut(s)	361
BamHI	GGATCC	1 cut(s)	1096
BanII	GRGCYC	1 cut(s)	607
BarI	GAAGNNNNNNTAC	2 cut(s)	829, 861
Bbv12I	GWGCWC	1 cut(s)	607
BbvCI	CCTCAGC	2 cut(s)	36, 1044
BbvI	GCAGC	9 cut(s)	24, 30, 70, 382, 481, 790, 793, 1105, 1188
BccI	CCATC	6 cut(s)	260, 403, 956, 1246, 1255, 1286
BceAI	ACGGC	1 cut(s)	404
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	876
BfaI	CTAG	1 cut(s)	1312
BlpI	GCTNAGC	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	564
BmeT110I	CYCGRG	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	1098
BmrFI	CCNGG	1 cut(s)	564
BmrI	ACTGGG	1 cut(s)	1092
BmsI	GCATC	4 cut(s)	245, 357, 406, 468
BmuI	ACTGGG	1 cut(s)	1092
BplI	GAGNNNNNCTC	6 cut(s)	342, 374, 640, 672, 1188, 1220
Bpu10I	CCTNAGC	2 cut(s)	36, 1044
Bpu1102I	GCTNAGC	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	564
BsaAI	YACGTR	2 cut(s)	533, 989
BsaBI	GATNNNNATC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	876
BsaJI	CCNNGG	3 cut(s)	333, 736, 1014
BsaWI	WCCGGW	2 cut(s)	390, 572
Bsc4I	CCNNNNNNNGG	4 cut(s)	339, 397, 722, 1244
Bse1I	ACTGG	2 cut(s)	1087, 1100
Bse8I	GATNNNNATC	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	333, 736, 1014
BseGI	GGATG	7 cut(s)	236, 252, 372, 459, 1266, 1270, 1297
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	4 cut(s)	339, 397, 722, 1244
BseMII	CTCAG	6 cut(s)	50, 189, 388, 869, 1035, 1137
BseNI	ACTGG	2 cut(s)	1087, 1100
BseRI	GAGGAG	3 cut(s)	24, 50, 1061
BseXI	GCAGC	9 cut(s)	24, 30, 70, 382, 481, 790, 793, 1105, 1188
BseYI	CCCAGC	2 cut(s)	181, 187
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	703, 954
BsiHKAI	GWGCWC	1 cut(s)	607
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	4 cut(s)	391, 564, 573, 1258
BslI	CCNNNNNNNGG	4 cut(s)	339, 397, 722, 1244
BsmAI	GTCTC	1 cut(s)	876
BsmI	GAATGC	1 cut(s)	905
BsnI	GGCC	2 cut(s)	703, 954
Bso31I	GGTCTC	1 cut(s)	876
BsoBI	CYCGRG	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp13I	TCCGGA	1 cut(s)	390
Bsp143I	GATC	6 cut(s)	355, 553, 559, 725, 1096, 1176
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	4 cut(s)	15, 378, 843, 1074
BspANI	GGCC	2 cut(s)	703, 954
BspCNI	CTCAG	6 cut(s)	49, 188, 387, 870, 1036, 1138
BspEI	TCCGGA	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	1098
BspPI	GGATC	6 cut(s)	554, 561, 733, 1091, 1104, 1171
BspTNI	GGTCTC	1 cut(s)	876
BsrI	ACTGG	2 cut(s)	1087, 1100
BssECI	CCNNGG	3 cut(s)	333, 736, 1014
BssMI	GATC	6 cut(s)	355, 553, 559, 725, 1096, 1176
BssT1I	CCWWGG	1 cut(s)	1014
Bst4CI	ACNGT	3 cut(s)	476, 791, 1109
Bst6I	CTCTTC	2 cut(s)	624, 1187
BstBAI	YACGTR	2 cut(s)	533, 989
BstC8I	GCNNGC	2 cut(s)	799, 976
BstDEI	CTNAG	7 cut(s)	36, 175, 374, 540, 878, 1044, 1146
BstEII	GGTNACC	1 cut(s)	278
BstF5I	GGATG	7 cut(s)	236, 252, 372, 459, 1266, 1270, 1297
BstKTI	GATC	6 cut(s)	358, 556, 562, 728, 1099, 1179
BstMAI	GTCTC	1 cut(s)	876
BstMBI	GATC	6 cut(s)	355, 553, 559, 725, 1096, 1176
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 494
BstNSI	RCATGY	1 cut(s)	834
BstPI	GGTNACC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	562
BstSNI	TACGTA	1 cut(s)	533
BstV1I	GCAGC	9 cut(s)	24, 30, 70, 382, 481, 790, 793, 1105, 1188
BstX2I	RGATCY	3 cut(s)	559, 1096, 1176
BstXI	CCANNNNNNTGG	1 cut(s)	1161
BstYI	RGATCY	3 cut(s)	559, 1096, 1176
BsuRI	GGCC	2 cut(s)	703, 954
BtsCI	GGATG	7 cut(s)	236, 252, 372, 459, 1266, 1270, 1297
BtsI	GCAGTG	1 cut(s)	1038
BtsIMutI	CAGTG	5 cut(s)	472, 796, 1038, 1080, 1114
Cac8I	GCNNGC	2 cut(s)	799, 976
Csp6I	GTAC	2 cut(s)	534, 846
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	3 cut(s)	831, 902, 1141
CviQI	GTAC	2 cut(s)	534, 846
DdeI	CTNAG	7 cut(s)	36, 175, 374, 540, 878, 1044, 1146
DpnI	GATC	6 cut(s)	357, 555, 561, 727, 1098, 1178
DpnII	GATC	6 cut(s)	355, 553, 559, 725, 1096, 1176
Eam1104I	CTCTTC	2 cut(s)	624, 1187
EarI	CTCTTC	2 cut(s)	624, 1187
Ecl136II	GAGCTC	1 cut(s)	605
Eco105I	TACGTA	1 cut(s)	533
Eco130I	CCWWGG	1 cut(s)	1014
Eco147I	AGGCCT	1 cut(s)	954
Eco24I	GRGCYC	1 cut(s)	607
Eco31I	GGTCTC	1 cut(s)	876
Eco53kI	GAGCTC	1 cut(s)	605
Eco88I	CYCGRG	1 cut(s)	361
Eco91I	GGTNACC	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	605
EcoO65I	GGTNACC	1 cut(s)	278
EcoRI	GAATTC	2 cut(s)	27, 401
EcoT14I	CCWWGG	1 cut(s)	1014
EcoT22I	ATGCAT	1 cut(s)	907
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	1014
FaeI	CATG	3 cut(s)	834, 905, 1144
FalI	AAGNNNNNCTT	4 cut(s)	942, 974, 1166, 1198
FatI	CATG	3 cut(s)	830, 901, 1140
FauNDI	CATATG	1 cut(s)	706
FokI	GGATG	7 cut(s)	223, 239, 379, 446, 1273, 1277, 1304
FriOI	GRGCYC	1 cut(s)	607
FspBI	CTAG	1 cut(s)	1312
GsaI	CCCAGC	2 cut(s)	185, 191
HaeIII	GGCC	2 cut(s)	703, 954
HapII	CCGG	4 cut(s)	391, 564, 573, 1258
Hin1II	CATG	3 cut(s)	834, 905, 1144
HincII	GTYRAC	1 cut(s)	1000
HindII	GTYRAC	1 cut(s)	1000
HinfI	GANTC	7 cut(s)	136, 307, 515, 731, 983, 1150, 1274
HpaI	GTTAAC	1 cut(s)	1000
HpaII	CCGG	4 cut(s)	391, 564, 573, 1258
HphI	GGTGA	3 cut(s)	88, 213, 272
Hpy166II	GTNNAC	3 cut(s)	157, 1000, 1105
Hpy188I	TCNGA	5 cut(s)	26, 135, 730, 740, 1208
Hpy188III	TCNNGA	6 cut(s)	391, 406, 512, 557, 767, 1300
Hpy8I	GTNNAC	3 cut(s)	157, 1000, 1105
HpyCH4III	ACNGT	3 cut(s)	476, 791, 1109
HpyCH4IV	ACGT	2 cut(s)	532, 988
HpyCH4V	TGCA	8 cut(s)	12, 86, 370, 482, 497, 638, 905, 1031
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 494
HpyF3I	CTNAG	7 cut(s)	36, 175, 374, 540, 878, 1044, 1146
HpySE526I	ACGT	2 cut(s)	532, 988
Hsp92II	CATG	3 cut(s)	834, 905, 1144
Kpn2I	TCCGGA	1 cut(s)	390
KspAI	GTTAAC	1 cut(s)	1000
Kzo9I	GATC	6 cut(s)	355, 553, 559, 725, 1096, 1176
LmnI	GCTCC	3 cut(s)	602, 1048, 1240
Lsp1109I	GCAGC	9 cut(s)	24, 30, 70, 382, 481, 790, 793, 1105, 1188
LweI	GCATC	4 cut(s)	245, 357, 406, 468
MaeI	CTAG	1 cut(s)	1312
MaeII	ACGT	2 cut(s)	532, 988
MaeIII	GTNAC	2 cut(s)	278, 467
MalI	GATC	6 cut(s)	357, 555, 561, 727, 1098, 1178
MboI	GATC	6 cut(s)	355, 553, 559, 725, 1096, 1176
MboII	GAAGA	5 cut(s)	302, 641, 708, 1174, 1182
MfeI	CAATTG	1 cut(s)	849
MflI	RGATCY	3 cut(s)	559, 1096, 1176
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	9 cut(s)	27, 316, 395, 401, 614, 642, 762, 849, 1032
MlyI	GAGTC	2 cut(s)	509, 725
MmeI	TCCRAC	1 cut(s)	580
Mph1103I	ATGCAT	1 cut(s)	907
MroI	TCCGGA	1 cut(s)	390
MroXI	GAANNNNTTC	1 cut(s)	1307
MseI	TTAA	4 cut(s)	671, 969, 999, 1035
MslI	CAYNNNNRTG	1 cut(s)	477
MspA1I	CMGCKG	2 cut(s)	15, 378
MspI	CCGG	4 cut(s)	391, 564, 573, 1258
MspR9I	CCNGG	1 cut(s)	564
MunI	CAATTG	1 cut(s)	849
Mva1269I	GAATGC	1 cut(s)	905
MwoI	GCNNNNNNNGC	2 cut(s)	18, 494
NciI	CCSGG	1 cut(s)	564
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	6 cut(s)	355, 553, 559, 725, 1096, 1176
NlaIII	CATG	3 cut(s)	834, 905, 1144
NlaIV	GGNNCC	1 cut(s)	1098
NmeAIII	GCCGAG	1 cut(s)	853
NmuCI	GTSAC	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	907
NspI	RCATGY	1 cut(s)	834
OliI	CACNNNNGTG	1 cut(s)	477
PceI	AGGCCT	1 cut(s)	954
PctI	GAATGC	1 cut(s)	905
PdmI	GAANNNNTTC	1 cut(s)	1307
PfeI	GAWTC	5 cut(s)	136, 307, 983, 1150, 1274
PfoI	TCCNGGA	1 cut(s)	562
PleI	GAGTC	2 cut(s)	509, 725
PpsI	GAGTC	2 cut(s)	509, 725
Ppu21I	YACGTR	2 cut(s)	533, 989
Psp124BI	GAGCTC	1 cut(s)	607
PspEI	GGTNACC	1 cut(s)	278
PspFI	CCCAGC	2 cut(s)	181, 187
PspN4I	GGNNCC	1 cut(s)	1098
PsuI	RGATCY	3 cut(s)	559, 1096, 1176
RsaI	GTAC	2 cut(s)	535, 847
RsaNI	GTAC	2 cut(s)	534, 846
RseI	CAYNNNNRTG	1 cut(s)	477
SacI	GAGCTC	1 cut(s)	607
SaqAI	TTAA	4 cut(s)	671, 969, 999, 1035
Sau3AI	GATC	6 cut(s)	355, 553, 559, 725, 1096, 1176
SchI	GAGTC	2 cut(s)	509, 725
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	4 cut(s)	245, 357, 406, 468
SmiMI	CAYNNNNRTG	1 cut(s)	477
SnaBI	TACGTA	1 cut(s)	533
Sse9I	AATT	9 cut(s)	27, 316, 395, 401, 614, 642, 762, 849, 1032
SseBI	AGGCCT	1 cut(s)	954
SsiI	CCGC	4 cut(s)	15, 378, 843, 1074
SspI	AATATT	1 cut(s)	994
SspMI	CTAG	1 cut(s)	1312
SstI	GAGCTC	1 cut(s)	607
StuI	AGGCCT	1 cut(s)	954
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	1 cut(s)	1014
TaaI	ACNGT	3 cut(s)	476, 791, 1109
TaiI	ACGT	2 cut(s)	535, 991
TaqI	TCGA	2 cut(s)	513, 766
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	9 cut(s)	27, 316, 395, 401, 614, 642, 762, 849, 1032
TauI	GCSGC	3 cut(s)	18, 381, 1076
TfiI	GAWTC	5 cut(s)	136, 307, 983, 1150, 1274
Tru1I	TTAA	4 cut(s)	671, 969, 999, 1035
Tru9I	TTAA	4 cut(s)	671, 969, 999, 1035
TscAI	CASTG	5 cut(s)	479, 796, 1045, 1087, 1114
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	9 cut(s)	12, 18, 83, 370, 494, 778, 781, 1118, 1201
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	873, 890, 1174
TspGWI	ACGGA	1 cut(s)	1300
TspRI	CASTG	5 cut(s)	479, 796, 1045, 1087, 1114
XapI	RAATTY	2 cut(s)	27, 401
XceI	RCATGY	1 cut(s)	834
XcmI	CCANNNNNNNNNTGG	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	1307
XspI	CTAG	1 cut(s)	1312
Zsp2I	ATGCAT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.