RLG00000005524

1-aminocyclopropane-1-carboxylate deaminase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
68290054 .. 68293541
3488 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005524

Sequence Viewer

Length: 1332 bp
ATGTTGTGTTGCGGTGGCAGCTTCCGAATTCCTCCTCAGCTTGCCAAAAACAAAGCCCTCCTCATTTTCCCTTCTCGCGCTGCTGCACTCACTCTCACCCAACCCAATAACAAACACAAACACAAAGCCTTTCAGATTCACTCACTAATGGAACTGAACACTTCACACTCAAACTCAAACTCAAACTCAAACTCAAACTCAGGGCTGGGGCTGGACTTCCTCTCAAAGAAGCCATATTCACCTCCTTCTTGGGCATCCCACATCAGCCCCATCCCCTCTCACACCTTCTCTCTCGGTCACCTTCCCACTCCAATCCACAAATGGAATCTTCCTAATTTGCCCAACAACACCGAGGTCTGGTTGAAGCGTGATGATCTCTCGGGGATGCAGCTCAGCGGCAACAAAGTCCGGAAATTGGAATTCCTGATGGCAGATGCCGTCCAAAAGGGTGCTGATTGTATCATAACCATAGGGGGCATCCAAAGTAACCACTGTCGTGCAACTGCTGTGGCTGCAAAGTATCTCAATCTCGACTCTTATCTCATTTTACGTACCTCTAAGGTTCTTGTGGATCAAGATCCCGGACTTACCGGAAACCTTTTGGTTGAGCGTTTAGTTGGAGCTCATATTGAATTGATTTCAAAAGAAGAGTATGCAAAAATTGGGAGTGTGACTCTTACTAATACCTTAAAGGAAAGACTGATAAAAGAAGGAAGAAGGCCATATGTCATTCCTGTTGGTGGATCAGACTCCCTCGGAACTTGGGGATATATTCAAGCAATTCGAGAGATTGAGCAGCAGCTTCACAGTGGGGCTGGCAAACTAAAGTTTGATGATATTGTTGTAGCATGTGGAAGTGGGGGTACAATTGCTGGTTTGTCATTGGGGTCTCGGCTGAGTTCATTGAAGGCAAAAGTTCATGCATTCTCTGTCTGCGATGACCCTGATTACTTCTACGACTTTGTTCAAGGCCTACTTGATGGACTTGAAGCAGGCGTTGATTCACGTAATATTGTTAACATTCAAAATGCCAAGGGTTTAGGCTATGCAATCAACACTGCTGAGGAGCTTACTTTTGTGAAGGAGATTGCCGCAACCACGGGGGTTATTTTGGATCCAGTTTACAGTGGCAAAGCTGCATATGGATTGCTGAAAGACATGACTGAGAATCCAAAGAAGTGGGAAGGAAGAAAGATCCTCTTCATACACACAGGTGGGCTGCTTGGGTTGTTTGACAAGGTTGAGCAGATTGCCCCATCATTGGGAAATTACAGCCGGATGGATGTCTGCGAATCTGTTCCACGGAAGGATGGTATCGGGAAAATGTTCTAG

Protein Analysis

444

Amino Acids

48.17

Weight (kDa)

8.87

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 97 - 405 7.4e-35 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 78
AccIII TCCGGA 1 cut(s) 408
AciI CCGC 3 cut(s) 12, 396, 1092
AclWI GGATC 6 cut(s) 572, 579, 751, 1109, 1122, 1189
AcsI RAATTY 2 cut(s) 27, 419
AfaI GTAC 2 cut(s) 553, 865
AfiI CCNNNNNNNGG 5 cut(s) 357, 415, 740, 1261, 1262
AgsI TTSAA 8 cut(s) 364, 632, 642, 776, 907, 968, 989, 1025
AleI CACNNNNGTG 2 cut(s) 495, 1212
AluBI AGCT 7 cut(s) 21, 40, 391, 623, 802, 1069, 1136
AluI AGCT 7 cut(s) 21, 40, 391, 623, 802, 1069, 1136
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 1 cut(s) 894
AlwI GGATC 6 cut(s) 572, 579, 751, 1109, 1122, 1189
Ama87I CYCGRG 1 cut(s) 379
Aor13HI TCCGGA 1 cut(s) 408
AoxI GGCC 2 cut(s) 719, 970
ApeKI GCWGC 9 cut(s) 18, 80, 83, 388, 512, 796, 799, 1136, 1219
ApoI RAATTY 2 cut(s) 27, 419
Asp700I GAANNNNTTC 2 cut(s) 1296, 1325
AspLEI GCGC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 582
AsuHPI GGTGA 3 cut(s) 88, 231, 290
AvaI CYCGRG 1 cut(s) 379
BamHI GGATCC 1 cut(s) 1114
BanII GRGCYC 1 cut(s) 625
BarI GAAGNNNNNNTAC 2 cut(s) 847, 879
Bbv12I GWGCWC 1 cut(s) 625
BbvCI CCTCAGC 2 cut(s) 36, 1062
BbvI GCAGC 9 cut(s) 30, 67, 70, 400, 499, 808, 811, 1123, 1206
BccI CCATC 6 cut(s) 278, 421, 974, 1264, 1273, 1304
BceAI ACGGC 1 cut(s) 422
BcnI CCSGG 1 cut(s) 582
BcoDI GTCTC 1 cut(s) 894
BfaI CTAG 1 cut(s) 1330
BlpI GCTNAGC 1 cut(s) 392
Bme1390I CCNGG 1 cut(s) 582
BmeT110I CYCGRG 1 cut(s) 379
BmiI GGNNCC 1 cut(s) 1116
BmrFI CCNGG 1 cut(s) 582
BmsI GCATC 4 cut(s) 263, 375, 424, 486
BplI GAGNNNNNCTC 2 cut(s) 658, 690
Bpu10I CCTNAGC 2 cut(s) 36, 1062
Bpu1102I GCTNAGC 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 582
BsaAI YACGTR 2 cut(s) 551, 1007
BsaBI GATNNNNATC 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 894
BsaJI CCNNGG 5 cut(s) 351, 754, 1032, 1098, 1301
BsaWI WCCGGW 2 cut(s) 408, 590
Bsc4I CCNNNNNNNGG 5 cut(s) 357, 415, 740, 1261, 1262
Bse1I ACTGG 1 cut(s) 1118
Bse8I GATNNNNATC 1 cut(s) 576
BseAI TCCGGA 1 cut(s) 408
BseDI CCNNGG 5 cut(s) 351, 754, 1032, 1098, 1301
BseGI GGATG 7 cut(s) 254, 270, 390, 477, 1284, 1288, 1315
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 5 cut(s) 357, 415, 740, 1261, 1262
BseMII CTCAG 6 cut(s) 50, 213, 406, 887, 1053, 1155
BseNI ACTGG 1 cut(s) 1118
BseRI GAGGAG 3 cut(s) 24, 50, 1079
BseXI GCAGC 9 cut(s) 30, 67, 70, 400, 499, 808, 811, 1123, 1206
BseYI CCCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 721, 972
BsiHKAI GWGCWC 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 379
BsiSI CCGG 4 cut(s) 409, 582, 591, 1276
BslI CCNNNNNNNGG 5 cut(s) 357, 415, 740, 1261, 1262
BsmAI GTCTC 1 cut(s) 894
BsmI GAATGC 1 cut(s) 923
BsnI GGCC 2 cut(s) 721, 972
Bso31I GGTCTC 1 cut(s) 894
BsoBI CYCGRG 1 cut(s) 379
Bsp1286I GDGCHC 1 cut(s) 625
Bsp13I TCCGGA 1 cut(s) 408
Bsp143I GATC 6 cut(s) 373, 571, 577, 743, 1114, 1194
Bsp1720I GCTNAGC 1 cut(s) 392
BspACI CCGC 3 cut(s) 12, 396, 1092
BspANI GGCC 2 cut(s) 721, 972
BspCNI CTCAG 6 cut(s) 49, 212, 405, 888, 1054, 1156
BspEI TCCGGA 1 cut(s) 408
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 1116
BspPI GGATC 6 cut(s) 572, 579, 751, 1109, 1122, 1189
BspTNI GGTCTC 1 cut(s) 894
BsrI ACTGG 1 cut(s) 1118
BssECI CCNNGG 5 cut(s) 351, 754, 1032, 1098, 1301
BssMI GATC 6 cut(s) 373, 571, 577, 743, 1114, 1194
BssT1I CCWWGG 1 cut(s) 1032
Bst4CI ACNGT 3 cut(s) 494, 809, 1127
Bst6I CTCTTC 2 cut(s) 642, 1205
BstBAI YACGTR 2 cut(s) 551, 1007
BstC8I GCNNGC 3 cut(s) 42, 817, 994
BstDEI CTNAG 7 cut(s) 36, 199, 392, 558, 896, 1062, 1164
BstDSI CCRYGG 2 cut(s) 1098, 1301
BstEII GGTNACC 1 cut(s) 296
BstF5I GGATG 7 cut(s) 254, 270, 390, 477, 1284, 1288, 1315
BstFNI CGCG 1 cut(s) 78
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 6 cut(s) 376, 574, 580, 746, 1117, 1197
BstMAI GTCTC 1 cut(s) 894
BstMBI GATC 6 cut(s) 373, 571, 577, 743, 1114, 1194
BstMWI GCNNNNNNNGC 2 cut(s) 18, 512
BstNSI RCATGY 1 cut(s) 852
BstPI GGTNACC 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 580
BstSNI TACGTA 1 cut(s) 551
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 9 cut(s) 30, 67, 70, 400, 499, 808, 811, 1123, 1206
BstX2I RGATCY 3 cut(s) 577, 1114, 1194
BstXI CCANNNNNNTGG 1 cut(s) 1179
BstYI RGATCY 3 cut(s) 577, 1114, 1194
BsuRI GGCC 2 cut(s) 721, 972
BtgI CCRYGG 2 cut(s) 1098, 1301
BtgZI GCGATG 1 cut(s) 951
BtsCI GGATG 7 cut(s) 254, 270, 390, 477, 1284, 1288, 1315
BtsI GCAGTG 1 cut(s) 1056
BtsIMutI CAGTG 4 cut(s) 490, 814, 1056, 1132
Cac8I GCNNGC 3 cut(s) 42, 817, 994
CfoI GCGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 552, 864
CspCI CAANNNNNGTGG 2 cut(s) 489, 524
CviAII CATG 3 cut(s) 849, 920, 1159
CviQI GTAC 2 cut(s) 552, 864
DdeI CTNAG 7 cut(s) 36, 199, 392, 558, 896, 1062, 1164
DpnI GATC 6 cut(s) 375, 573, 579, 745, 1116, 1196
DpnII GATC 6 cut(s) 373, 571, 577, 743, 1114, 1194
Eam1104I CTCTTC 2 cut(s) 642, 1205
EarI CTCTTC 2 cut(s) 642, 1205
Ecl136II GAGCTC 1 cut(s) 623
Eco105I TACGTA 1 cut(s) 551
Eco130I CCWWGG 1 cut(s) 1032
Eco147I AGGCCT 1 cut(s) 972
Eco24I GRGCYC 1 cut(s) 625
Eco31I GGTCTC 1 cut(s) 894
Eco53kI GAGCTC 1 cut(s) 623
Eco88I CYCGRG 1 cut(s) 379
Eco91I GGTNACC 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 623
EcoO65I GGTNACC 1 cut(s) 296
EcoRI GAATTC 2 cut(s) 27, 419
EcoT14I CCWWGG 1 cut(s) 1032
EcoT22I ATGCAT 1 cut(s) 925
EcoT38I GRGCYC 1 cut(s) 625
ErhI CCWWGG 1 cut(s) 1032
FaeI CATG 3 cut(s) 852, 923, 1162
FalI AAGNNNNNCTT 4 cut(s) 960, 992, 1184, 1216
FatI CATG 3 cut(s) 848, 919, 1158
FauNDI CATATG 2 cut(s) 724, 1141
FokI GGATG 7 cut(s) 241, 257, 397, 464, 1291, 1295, 1322
FriOI GRGCYC 1 cut(s) 625
FspBI CTAG 1 cut(s) 1330
GlaI GCGC 1 cut(s) 79
GsaI CCCAGC 1 cut(s) 209
HaeIII GGCC 2 cut(s) 721, 972
HapII CCGG 4 cut(s) 409, 582, 591, 1276
HhaI GCGC 1 cut(s) 80
Hin1II CATG 3 cut(s) 852, 923, 1162
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 1018
HindII GTYRAC 1 cut(s) 1018
HinfI GANTC 8 cut(s) 136, 325, 533, 673, 749, 1001, 1168, 1292
HpaI GTTAAC 1 cut(s) 1018
HpaII CCGG 4 cut(s) 409, 582, 591, 1276
HphI GGTGA 3 cut(s) 88, 231, 290
Hpy166II GTNNAC 2 cut(s) 1018, 1123
Hpy188I TCNGA 4 cut(s) 26, 135, 748, 758
Hpy188III TCNNGA 6 cut(s) 409, 424, 530, 575, 785, 1318
Hpy8I GTNNAC 2 cut(s) 1018, 1123
HpyCH4III ACNGT 3 cut(s) 494, 809, 1127
HpyCH4IV ACGT 2 cut(s) 550, 1006
HpyCH4V TGCA 8 cut(s) 86, 388, 500, 515, 656, 923, 1049, 1139
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 512
HpyF3I CTNAG 7 cut(s) 36, 199, 392, 558, 896, 1062, 1164
HpySE526I ACGT 2 cut(s) 550, 1006
Hsp92II CATG 3 cut(s) 852, 923, 1162
HspAI GCGC 1 cut(s) 78
Kpn2I TCCGGA 1 cut(s) 408
KspAI GTTAAC 1 cut(s) 1018
Kzo9I GATC 6 cut(s) 373, 571, 577, 743, 1114, 1194
LmnI GCTCC 2 cut(s) 620, 1066
Lsp1109I GCAGC 9 cut(s) 30, 67, 70, 400, 499, 808, 811, 1123, 1206
LweI GCATC 4 cut(s) 263, 375, 424, 486
MaeI CTAG 1 cut(s) 1330
MaeII ACGT 2 cut(s) 550, 1006
MaeIII GTNAC 3 cut(s) 296, 485, 670
MalI GATC 6 cut(s) 375, 573, 579, 745, 1116, 1196
MboI GATC 6 cut(s) 373, 571, 577, 743, 1114, 1194
MboII GAAGA 5 cut(s) 320, 659, 726, 1192, 1200
MfeI CAATTG 1 cut(s) 867
MflI RGATCY 3 cut(s) 577, 1114, 1194
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 9 cut(s) 27, 334, 413, 419, 632, 660, 780, 867, 1267
MlyI GAGTC 3 cut(s) 527, 667, 743
MmeI TCCRAC 1 cut(s) 598
Mph1103I ATGCAT 1 cut(s) 925
MroI TCCGGA 1 cut(s) 408
MroXI GAANNNNTTC 2 cut(s) 1296, 1325
MseI TTAA 2 cut(s) 689, 1017
MslI CAYNNNNRTG 2 cut(s) 495, 1212
MspA1I CMGCKG 1 cut(s) 396
MspI CCGG 4 cut(s) 409, 582, 591, 1276
MspR9I CCNGG 1 cut(s) 582
MunI CAATTG 1 cut(s) 867
Mva1269I GAATGC 1 cut(s) 923
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 18, 512
NciI CCSGG 1 cut(s) 582
NdeI CATATG 2 cut(s) 724, 1141
NdeII GATC 6 cut(s) 373, 571, 577, 743, 1114, 1194
NlaIII CATG 3 cut(s) 852, 923, 1162
NlaIV GGNNCC 1 cut(s) 1116
NmeAIII GCCGAG 1 cut(s) 871
NmuCI GTSAC 2 cut(s) 296, 670
NsiI ATGCAT 1 cut(s) 925
NspI RCATGY 1 cut(s) 852
OliI CACNNNNGTG 2 cut(s) 495, 1212
PceI AGGCCT 1 cut(s) 972
PctI GAATGC 1 cut(s) 923
PdmI GAANNNNTTC 2 cut(s) 1296, 1325
PfeI GAWTC 5 cut(s) 136, 325, 1001, 1168, 1292
PfoI TCCNGGA 1 cut(s) 580
PleI GAGTC 3 cut(s) 527, 667, 743
PpsI GAGTC 3 cut(s) 527, 667, 743
Ppu21I YACGTR 2 cut(s) 551, 1007
Psp124BI GAGCTC 1 cut(s) 625
PspEI GGTNACC 1 cut(s) 296
PspFI CCCAGC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 1116
PsuI RGATCY 3 cut(s) 577, 1114, 1194
RsaI GTAC 2 cut(s) 553, 865
RsaNI GTAC 2 cut(s) 552, 864
RseI CAYNNNNRTG 2 cut(s) 495, 1212
SacI GAGCTC 1 cut(s) 625
SaqAI TTAA 2 cut(s) 689, 1017
Sau3AI GATC 6 cut(s) 373, 571, 577, 743, 1114, 1194
SchI GAGTC 3 cut(s) 527, 667, 743
ScrFI CCNGG 1 cut(s) 582
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 4 cut(s) 263, 375, 424, 486
SmiMI CAYNNNNRTG 2 cut(s) 495, 1212
SnaBI TACGTA 1 cut(s) 551
Sse9I AATT 9 cut(s) 27, 334, 413, 419, 632, 660, 780, 867, 1267
SseBI AGGCCT 1 cut(s) 972
SsiI CCGC 3 cut(s) 12, 396, 1092
SspI AATATT 1 cut(s) 1012
SspMI CTAG 1 cut(s) 1330
SstI GAGCTC 1 cut(s) 625
StuI AGGCCT 1 cut(s) 972
StyD4I CCNGG 1 cut(s) 580
StyI CCWWGG 1 cut(s) 1032
TaaI ACNGT 3 cut(s) 494, 809, 1127
TaiI ACGT 2 cut(s) 553, 1009
TaqI TCGA 2 cut(s) 531, 784
TaqII GACCGA 1 cut(s) 284
TasI AATT 9 cut(s) 27, 334, 413, 419, 632, 660, 780, 867, 1267
TauI GCSGC 2 cut(s) 399, 1094
TfiI GAWTC 5 cut(s) 136, 325, 1001, 1168, 1292
Tru1I TTAA 2 cut(s) 689, 1017
Tru9I TTAA 2 cut(s) 689, 1017
TscAI CASTG 4 cut(s) 497, 814, 1063, 1132
TseFI GTSAC 2 cut(s) 296, 670
TseI GCWGC 9 cut(s) 18, 80, 83, 388, 512, 796, 799, 1136, 1219
Tsp45I GTSAC 2 cut(s) 296, 670
TspDTI ATGAA 3 cut(s) 891, 908, 1192
TspGWI ACGGA 1 cut(s) 1318
TspRI CASTG 4 cut(s) 497, 814, 1063, 1132
XapI RAATTY 2 cut(s) 27, 419
XceI RCATGY 1 cut(s) 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
XmnI GAANNNNTTC 2 cut(s) 1296, 1325
XspI CTAG 1 cut(s) 1330
Zsp2I ATGCAT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.