Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007898

Physical Location & Seq

Genomic Coordinates Forward (+)

6470962 .. 6472337

Gene Structure 1376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G055600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCCTTTTCTGTCTGTGATGACCCTGATTACTTCTACGACTATGTTCAAGGCCTACTTGATGGACTTGAGGCAGGCATTGATTCACGTGATATTGTTAACATTCAAAATTGGCAAAGCTGCTTATGGAATGTTGAAAGACATGGCTGAGAATACAAAGAAGTGGGAAGGAAGAAAGATCCTCTTCATACACACAGGTGGGTTACTTGGGTTGTTTGACAAGGTAGAGCAGATGGCTACATCGTCGGGAAATTGGCGTCGGATGGATGTCCAAGAATCTGTTCCCCGGAGCGATGGTATCGGGAAAATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009507 GO:0009536 GO:0009692 GO:0009693 GO:0009987 GO:0010035 GO:0010038 GO:0010817 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019447 GO:0019478 GO:0019752 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044273 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046416 GO:0046438 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

105

Amino Acids

11.8

Weight (kDa)

9.75

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48420 AT1G48420 AT1G48420
fragaria_vesca	FvH4_5g18020 FvH4_5g18030 FvH4_5g18030 FvH4_5g18030
malus_domestica	MD06G1235700.v1.1 MD14G1242800.v1.1
prunus_persica	Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.8G055600_v2.0.a1
pyrus_communis	pycom14g20400
rosa_chinensis	RchiOBHm_Chr7g0177581
rosa_laevigata	RLG00000005524
rosa_roxburghii	Rroxscaffold_3G00275740
rosa_rugosa	Rorug06G0407700
rosa_samantha	Rh7AG006800 Rh7BG006800 Rh7CG007300 Rh7DG006800
rosa_wichuraiana	Rw7G000580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	172
AcvI	CACGTG	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	256
AgsI	TTSAA	3 cut(s)	49, 106, 136
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	119
Asp700I	GAANNNNTTC	2 cut(s)	279, 308
AsuC2I	CCSGG	1 cut(s)	286
BbrPI	CACGTG	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	4 cut(s)	55, 226, 256, 287
BcnI	CCSGG	1 cut(s)	286
BfaI	CTAG	1 cut(s)	313
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	286
BsaAI	YACGTR	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	2 cut(s)	267, 271
BseMII	CTCAG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	286
BsnI	GGCC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	139
BspPI	GGATC	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	267, 271
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	53
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	267, 271
Cac8I	GCNNGC	1 cut(s)	75
CseI	GACGC	1 cut(s)	245
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	4 cut(s)	53, 119, 146, 236
CviKI_1	RGCY	4 cut(s)	53, 119, 146, 236
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Eco147I	AGGCCT	1 cut(s)	53
Eco72I	CACGTG	1 cut(s)	88
FaeI	CATG	1 cut(s)	145
FaiI	YATR	4 cut(s)	44, 126, 143, 188
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 167, 199
FatI	CATG	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	2 cut(s)	274, 278
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	313
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	286
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	256
Hin1II	CATG	1 cut(s)	145
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	2 cut(s)	82, 275
HpaI	GTTAAC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	2 cut(s)	246, 301
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	2 cut(s)	247, 261
HpyAV	CCTTC	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	87
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	256
Hsp92II	CATG	1 cut(s)	145
KspAI	GTTAAC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	4 cut(s)	38, 59, 180, 299
Lsp1109I	GCAGC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	313
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	201
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	2 cut(s)	175, 183
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	2 cut(s)	108, 250
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	2 cut(s)	63, 191
MroXI	GAANNNNTTC	2 cut(s)	279, 308
MseI	TTAA	1 cut(s)	98
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	286
NciI	CCSGG	1 cut(s)	286
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	1 cut(s)	145
OliI	CACNNNNGTG	1 cut(s)	195
PceI	AGGCCT	1 cut(s)	53
PdmI	GAANNNNTTC	2 cut(s)	279, 308
PfeI	GAWTC	2 cut(s)	82, 275
PkrI	GCNGC	1 cut(s)	121
PmaCI	CACGTG	1 cut(s)	88
PmlI	CACGTG	1 cut(s)	88
Ppu21I	YACGTR	1 cut(s)	88
PspCI	CACGTG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	286
SetI	ASST	4 cut(s)	90, 121, 199, 225
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	2 cut(s)	108, 250
SseBI	AGGCCT	1 cut(s)	53
SspMI	CTAG	1 cut(s)	313
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	284
TaiI	ACGT	1 cut(s)	90
TasI	AATT	2 cut(s)	108, 250
TfiI	GAWTC	2 cut(s)	82, 275
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	279, 308
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.