MD06G1235700.v1.1

1-aminocyclopropane-1-carboxylate deaminase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
36678897 .. 36682288
3392 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1235700.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGGAAGTGGCGGTCAACACCAAGAACAGCTACGATACGGCAGCGAAGGCGGTGGCGATGGACTTCCTGACGAAAAAGGCCTACACTCCTCCTCCGTGGGCATCGCATATCGACTCCATCCCTTCCCACACCGTCTCTCTTGGACAACGTGATGACCTTTCGGGAATGCAAGTGGGCGGTAACAAAATCAGAAAATTGGAATTCTTGATAGCGGATGCCGTGGCAAAGGGTGCTGACTGTGTCATTACGATAGGGGGCATCCAAAGCAACCATTGTTGTGCAACTGCAGTGGCTGCCAAGTATCTCAACCTTGACTCTTATCTCATGCTAGCTACCCCTAAGGCTCTCTTGGATAAAAATCCTGGACTGACAGGCAATCTCCTCATCGATCATTTAGTTGGAGCTCATGTTGTATTGATTGCAAAAGAAGACTGGATAAAATTCGGCCAAGAAGCTGTAACTAATCCTTTAAAGGAAAAACTGCTTAAAGAAGGAAGAAGGCCATATGTTATTCCTGCCGGTGGGTCAAACGCTCTAGGAACCTGGTCAGATTGCGGCCTTTCCGATGTACCATATCGTTTTAAATATTTATTTTGGATGAGAAGGGAGAAGGGTGCTGGGGGCTATATTGAAGCGATTCGAGAGATTGAGCAGCAGCTTCAGAGCCTGCCAGGAAAGTTTAAGCTTGATGATATAGTTGCTGCTTGTGGCAGTGGGGGTACAATTGCCGGATTGTCATTGGGCTCTTGGTTGAGTTCGTTGAAGGCAAAAGTTCATGCATTTGCTGTGGCTAGCAACCCTGATAACTTCTACAACTTTGTTCAGGGCATATTCAATGGAGCTGGGGCAGGCGTTGATTCGCACGATATTCTTGACGTTCAAGATGCGAAAGGTCTAGGCTATGCAATTACCACCCCTGAGGAGCTTAATTTTGTCAAGGAGATTGCTGCGACCACTGGGGTTGTTCTTGATCCAGTTTACACTGGCAAAGCTGCTTATGGAATGATGAAAGACATGGCTGAGAATCCAAAGAAGTGGGAAGGAAGAAATATCCTGTTCATACACTCGGGCGGGTTACTTGGGTTGTACGACAAGGTAGAGCAGATGGCTCCATTGTTGGGAAATTGGCGTCGGATGGATGTCAACGAATATGTTCCCCGGGGGGTTGATGATATTGGGAAAATGTTCTAA

Protein Analysis

397

Amino Acids

42.84

Weight (kDa)

6.46

Isoelectric Point (pI)

26.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 57 - 357 3.5e-25 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 11, 50, 177, 212, 555, 1071
AclWI GGATC 1 cut(s) 965
AcoI YGGCCR 1 cut(s) 445
AcsI RAATTY 2 cut(s) 200, 440
AcuI CTGAAG 1 cut(s) 644
AcyI GRCGYC 1 cut(s) 1129
AfaI GTAC 3 cut(s) 570, 721, 1088
AfiI CCNNNNNNNGG 2 cut(s) 521, 1118
AgsI TTSAA 4 cut(s) 632, 763, 835, 881
AjnI CCWGG 3 cut(s) 361, 542, 670
AluBI AGCT 9 cut(s) 30, 332, 404, 455, 658, 685, 842, 925, 992
AluI AGCT 9 cut(s) 30, 332, 404, 455, 658, 685, 842, 925, 992
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 965
AlwNI CAGNNNCTG 2 cut(s) 293, 667
Ama87I CYCGRG 2 cut(s) 1066, 1158
AoxI GGCC 4 cut(s) 78, 445, 500, 556
ApeKI GCWGC 7 cut(s) 41, 293, 652, 655, 701, 947, 992
ApoI RAATTY 2 cut(s) 200, 440
Asp700I GAANNNNTTC 3 cut(s) 636, 1152, 1184
AsuC2I CCSGG 2 cut(s) 1159, 1160
AsuNHI GCTAGC 2 cut(s) 328, 791
AvaI CYCGRG 2 cut(s) 1066, 1158
AxyI CCTNAGG 2 cut(s) 339, 918
BanII GRGCYC 2 cut(s) 406, 746
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 7 cut(s) 53, 280, 664, 667, 688, 934, 979
BccI CCATC 4 cut(s) 52, 125, 1099, 1129
BceAI ACGGC 2 cut(s) 54, 203
BciT130I CCWGG 3 cut(s) 363, 544, 672
BcnI CCSGG 2 cut(s) 1159, 1160
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 4 cut(s) 329, 536, 792, 896
BfmI CTRYAG 1 cut(s) 285
BisI GCNGC 8 cut(s) 42, 294, 556, 653, 656, 702, 948, 993
BlsI GCNGC 8 cut(s) 43, 295, 557, 654, 657, 703, 949, 994
Bme1390I CCNGG 5 cut(s) 363, 544, 672, 1159, 1160
BmeT110I CYCGRG 2 cut(s) 1066, 1158
BmiI GGNNCC 2 cut(s) 541, 1110
BmrFI CCNGG 5 cut(s) 363, 544, 672, 1159, 1160
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 4 cut(s) 110, 205, 267, 874
BmtI GCTAGC 2 cut(s) 332, 795
BmuI ACTGGG 1 cut(s) 966
BpiI GAAGAC 1 cut(s) 435
BpuMI CCSGG 2 cut(s) 1159, 1160
Bsa29I ATCGAT 1 cut(s) 387
BsaBI GATNNNNATC 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 1129
BsaJI CCNNGG 5 cut(s) 95, 219, 1157, 1158, 1159
BsaXI ACNNNNNCTCC 4 cut(s) 76, 106, 393, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 521, 1118
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 4 cut(s) 437, 961, 974, 988
Bse21I CCTNAGG 2 cut(s) 339, 918
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 3 cut(s) 363, 544, 672
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 5 cut(s) 95, 219, 1157, 1158, 1159
BseGI GGATG 6 cut(s) 117, 220, 258, 603, 1140, 1144
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 521, 1118
BseMII CTCAG 2 cut(s) 909, 1011
BseNI ACTGG 4 cut(s) 437, 961, 974, 988
BseRI GAGGAG 4 cut(s) 78, 81, 371, 935
BseXI GCAGC 7 cut(s) 53, 280, 664, 667, 688, 934, 979
BseYI CCCAGC 2 cut(s) 617, 842
BshFI GGCC 4 cut(s) 80, 447, 502, 558
BshVI ATCGAT 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 406
BsiHKCI CYCGRG 2 cut(s) 1066, 1158
BsiSI CCGG 3 cut(s) 519, 729, 1159
BslI CCNNNNNNNGG 2 cut(s) 521, 1118
BsmAI GTCTC 1 cut(s) 139
BsmBI CGTCTC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 171
BsnI GGCC 4 cut(s) 80, 447, 502, 558
BsoBI CYCGRG 2 cut(s) 1066, 1158
Bsp1286I GDGCHC 2 cut(s) 406, 746
Bsp143I GATC 2 cut(s) 388, 970
BspACI CCGC 6 cut(s) 11, 50, 177, 212, 555, 1071
BspANI GGCC 4 cut(s) 80, 447, 502, 558
BspCNI CTCAG 2 cut(s) 910, 1012
BspDI ATCGAT 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 541, 1110
BspMAI CTGCAG 1 cut(s) 289
BspOI GCTAGC 2 cut(s) 332, 795
BspPI GGATC 1 cut(s) 965
BsrFI RCCGGY 1 cut(s) 518
BsrI ACTGG 4 cut(s) 437, 961, 974, 988
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 5 cut(s) 95, 219, 1157, 1158, 1159
BssMI GATC 2 cut(s) 388, 970
BssNI GRCGYC 1 cut(s) 1129
Bst2UI CCWGG 3 cut(s) 363, 544, 672
Bst4CI ACNGT 2 cut(s) 133, 239
BstACI GRCGYC 1 cut(s) 1129
BstAPI GCANNNNNTGC 2 cut(s) 230, 293
BstC8I GCNNGC 4 cut(s) 330, 668, 793, 850
BstDEI CTNAG 3 cut(s) 339, 918, 1020
BstDSI CCRYGG 2 cut(s) 95, 219
BstF5I GGATG 6 cut(s) 117, 220, 258, 603, 1140, 1144
BstKTI GATC 2 cut(s) 391, 973
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 2 cut(s) 388, 970
BstMWI GCNNNNNNNGC 4 cut(s) 47, 230, 264, 293
BstNI CCWGG 3 cut(s) 363, 544, 672
BstSCI CCNGG 5 cut(s) 361, 542, 670, 1157, 1158
BstSFI CTRYAG 1 cut(s) 285
BstV1I GCAGC 7 cut(s) 53, 280, 664, 667, 688, 934, 979
BstV2I GAAGAC 1 cut(s) 435
BstXI CCANNNNNNTGG 1 cut(s) 1035
Bsu15I ATCGAT 1 cut(s) 387
Bsu36I CCTNAGG 2 cut(s) 339, 918
BsuRI GGCC 4 cut(s) 80, 447, 502, 558
BsuTUI ATCGAT 1 cut(s) 387
BtgI CCRYGG 2 cut(s) 95, 219
BtgZI GCGATG 2 cut(s) 71, 87
BtsCI GGATG 6 cut(s) 117, 220, 258, 603, 1140, 1144
BtsI GCAGTG 2 cut(s) 294, 718
BtsIMutI CAGTG 4 cut(s) 294, 718, 954, 981
Cac8I GCNNGC 4 cut(s) 330, 668, 793, 850
CaiI CAGNNNCTG 2 cut(s) 293, 667
Cfr10I RCCGGY 1 cut(s) 518
Cfr9I CCCGGG 1 cut(s) 1158
ClaI ATCGAT 1 cut(s) 387
CseI GACGC 1 cut(s) 1118
CsiI ACCWGGT 1 cut(s) 542
Csp6I GTAC 3 cut(s) 569, 720, 1087
CspCI CAANNNNNGTGG 4 cut(s) 270, 305, 943, 978
CviAII CATG 4 cut(s) 325, 407, 776, 1015
CviQI GTAC 3 cut(s) 569, 720, 1087
DdeI CTNAG 3 cut(s) 339, 918, 1020
DpnI GATC 2 cut(s) 390, 972
DpnII GATC 2 cut(s) 388, 970
DraI TTTAAA 2 cut(s) 471, 583
EaeI YGGCCR 1 cut(s) 445
Ecl136II GAGCTC 1 cut(s) 404
Eco147I AGGCCT 1 cut(s) 80
Eco24I GRGCYC 2 cut(s) 406, 746
Eco53kI GAGCTC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 644
Eco81I CCTNAGG 2 cut(s) 339, 918
Eco88I CYCGRG 2 cut(s) 1066, 1158
EcoICRI GAGCTC 1 cut(s) 404
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 3 cut(s) 361, 542, 670
EcoT22I ATGCAT 1 cut(s) 781
EcoT38I GRGCYC 2 cut(s) 406, 746
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 4 cut(s) 328, 410, 779, 1018
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 4 cut(s) 324, 406, 775, 1014
FauI CCCGC 1 cut(s) 1064
FauNDI CATATG 1 cut(s) 505
Fnu4HI GCNGC 8 cut(s) 42, 294, 556, 653, 656, 702, 948, 993
FokI GGATG 6 cut(s) 104, 227, 245, 610, 1147, 1151
FriOI GRGCYC 2 cut(s) 406, 746
Fsp4HI GCNGC 8 cut(s) 42, 294, 556, 653, 656, 702, 948, 993
FspBI CTAG 4 cut(s) 329, 536, 792, 896
GluI GCNGC 8 cut(s) 42, 294, 556, 653, 656, 702, 948, 993
GsaI CCCAGC 2 cut(s) 621, 846
HaeIII GGCC 4 cut(s) 80, 447, 502, 558
HapII CCGG 3 cut(s) 519, 729, 1159
HgaI GACGC 1 cut(s) 1118
Hin1I GRCGYC 1 cut(s) 1129
Hin1II CATG 4 cut(s) 328, 410, 779, 1018
HincII GTYRAC 2 cut(s) 16, 1144
HindII GTYRAC 2 cut(s) 16, 1144
HindIII AAGCTT 1 cut(s) 683
HinfI GANTC 5 cut(s) 113, 314, 637, 857, 1024
HpaII CCGG 3 cut(s) 519, 729, 1159
Hpy166II GTNNAC 3 cut(s) 16, 979, 1144
Hpy188I TCNGA 5 cut(s) 191, 550, 565, 663, 1134
Hpy188III TCNNGA 7 cut(s) 67, 162, 205, 641, 872, 881, 968
Hpy8I GTNNAC 3 cut(s) 16, 979, 1144
Hpy99I CGWCG 1 cut(s) 1134
HpyAV CCTTC 8 cut(s) 40, 132, 485, 492, 597, 604, 757, 1034
HpyCH4III ACNGT 2 cut(s) 133, 239
HpyCH4IV ACGT 2 cut(s) 148, 876
HpyCH4V TGCA 6 cut(s) 169, 281, 287, 422, 779, 905
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 230, 264, 293
HpyF3I CTNAG 3 cut(s) 339, 918, 1020
HpySE526I ACGT 2 cut(s) 148, 876
Hsp92I GRCGYC 1 cut(s) 1129
Hsp92II CATG 4 cut(s) 328, 410, 779, 1018
Kzo9I GATC 2 cut(s) 388, 970
LmnI GCTCC 4 cut(s) 401, 839, 922, 1114
Lsp1109I GCAGC 7 cut(s) 53, 280, 664, 667, 688, 934, 979
LweI GCATC 4 cut(s) 110, 205, 267, 874
MabI ACCWGGT 1 cut(s) 542
MaeI CTAG 4 cut(s) 329, 536, 792, 896
MaeII ACGT 2 cut(s) 148, 876
MaeIII GTNAC 3 cut(s) 179, 457, 1074
MalI GATC 2 cut(s) 390, 972
MboI GATC 2 cut(s) 388, 970
MboII GAAGA 3 cut(s) 440, 507, 1056
MfeI CAATTG 1 cut(s) 723
MhlI GDGCHC 2 cut(s) 406, 746
MluCI AATT 7 cut(s) 194, 200, 440, 723, 906, 928, 1123
MlyI GAGTC 2 cut(s) 107, 308
MmeI TCCRAC 2 cut(s) 379, 1112
MnlI CCTC 4 cut(s) 99, 102, 392, 913
Mph1103I ATGCAT 1 cut(s) 781
MroXI GAANNNNTTC 3 cut(s) 636, 1152, 1184
MseI TTAA 5 cut(s) 470, 486, 582, 681, 927
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 3 cut(s) 519, 729, 1159
MspR9I CCNGG 5 cut(s) 363, 544, 672, 1159, 1160
MunI CAATTG 1 cut(s) 723
Mva1269I GAATGC 1 cut(s) 171
MvaI CCWGG 3 cut(s) 363, 544, 672
MwoI GCNNNNNNNGC 4 cut(s) 47, 230, 264, 293
NciI CCSGG 2 cut(s) 1159, 1160
NdeI CATATG 1 cut(s) 505
NdeII GATC 2 cut(s) 388, 970
NheI GCTAGC 2 cut(s) 328, 791
NlaIII CATG 4 cut(s) 328, 410, 779, 1018
NlaIV GGNNCC 2 cut(s) 541, 1110
NsiI ATGCAT 1 cut(s) 781
PceI AGGCCT 1 cut(s) 80
PctI GAATGC 1 cut(s) 171
PdmI GAANNNNTTC 3 cut(s) 636, 1152, 1184
PfeI GAWTC 3 cut(s) 637, 857, 1024
PflFI GACNNNGTC 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 361
PkrI GCNGC 8 cut(s) 43, 295, 557, 654, 657, 703, 949, 994
PleI GAGTC 2 cut(s) 107, 308
PpsI GAGTC 2 cut(s) 107, 308
Psp124BI GAGCTC 1 cut(s) 406
Psp6I CCWGG 3 cut(s) 361, 542, 670
PspFI CCCAGC 2 cut(s) 617, 842
PspGI CCWGG 3 cut(s) 361, 542, 670
PspN4I GGNNCC 2 cut(s) 541, 1110
PstI CTGCAG 1 cut(s) 289
PstNI CAGNNNCTG 2 cut(s) 293, 667
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 3 cut(s) 570, 721, 1088
RsaNI GTAC 3 cut(s) 569, 720, 1087
RseI CAYNNNNRTG 1 cut(s) 276
SacI GAGCTC 1 cut(s) 406
SaqAI TTAA 5 cut(s) 470, 486, 582, 681, 927
SatI GCNGC 8 cut(s) 42, 294, 556, 653, 656, 702, 948, 993
Sau3AI GATC 2 cut(s) 388, 970
SchI GAGTC 2 cut(s) 107, 308
ScrFI CCNGG 5 cut(s) 363, 544, 672, 1159, 1160
SduI GDGCHC 2 cut(s) 406, 746
SexAI ACCWGGT 1 cut(s) 542
SfaNI GCATC 4 cut(s) 110, 205, 267, 874
SfcI CTRYAG 1 cut(s) 285
SmaI CCCGGG 1 cut(s) 1160
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 7 cut(s) 194, 200, 440, 723, 906, 928, 1123
SseBI AGGCCT 1 cut(s) 80
SsiI CCGC 6 cut(s) 11, 50, 177, 212, 555, 1071
SspI AATATT 1 cut(s) 587
SspMI CTAG 4 cut(s) 329, 536, 792, 896
SstI GAGCTC 1 cut(s) 406
StuI AGGCCT 1 cut(s) 80
StyD4I CCNGG 5 cut(s) 361, 542, 670, 1157, 1158
TaaI ACNGT 2 cut(s) 133, 239
TaiI ACGT 2 cut(s) 151, 879
TaqI TCGA 3 cut(s) 111, 387, 640
TasI AATT 7 cut(s) 194, 200, 440, 723, 906, 928, 1123
TauI GCSGC 1 cut(s) 558
TfiI GAWTC 3 cut(s) 637, 857, 1024
Tru1I TTAA 5 cut(s) 470, 486, 582, 681, 927
Tru9I TTAA 5 cut(s) 470, 486, 582, 681, 927
TscAI CASTG 4 cut(s) 294, 718, 961, 988
TseI GCWGC 7 cut(s) 41, 293, 652, 655, 701, 947, 992
TspDTI ATGAA 3 cut(s) 764, 1022, 1048
TspGWI ACGGA 1 cut(s) 84
TspMI CCCGGG 1 cut(s) 1158
TspRI CASTG 4 cut(s) 294, 718, 961, 988
Tth111I GACNNNGTC 1 cut(s) 239
XapI RAATTY 2 cut(s) 200, 440
XmaI CCCGGG 1 cut(s) 1158
XmnI GAANNNNTTC 3 cut(s) 636, 1152, 1184
XspI CTAG 4 cut(s) 329, 536, 792, 896
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.