Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007898

Physical Location & Seq

Genomic Coordinates Forward (+)

422068 .. 425880

Gene Structure 3813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG006800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTTGTGTTGCAGTGGCAGCTTCCGAATTCCTCCTCAGCTTACCAAAAACAAAGCCCTCCTCATTTTCCCTTCTCACCCTGCTGCACTCACTCTCACCCAACCCAATAACAAACACAAACACGAACGCTTTCAGATTCACTCACTAATGGAAGTGAACACTTCACACTCAAACTCAAACTCAAACTCAGGGCTGGGGCTGGGGCTGGACTTCCTCTCAAAGAAGCCATACTCACCTCCTTCTTGGGCATCCCACATCAGCCCCATCCCCTCTCACACCTTCTCTCTCGGTCACCTTCCCACTCCAATCCACAAATGGAATCTTCCTAATTTGCCCAACAACACCGAGGTCTGGTTGAAGCGTGATGATCTCTCGGGGATGCAGCTCAGCGGCAACAAAGTCCGGAAATTGGAATTCCTGATGGCAGATGCCGTCCAAAAGGGTGCTGATTGTATCATAACCATAGGGGGCATCCAAAGTAACCACTGTCGTGCAACTGCTGTGGCTGCAAAGTATCTCAATCTCGACTCTTATCTCAGTTTACGTACCTCTAAGGTTCTCGTGGATCAAGATCCCGGACTTACCGGGAACCTTCTGGTTGAGCGTTTAGTCGGAGCTCATATTGAATTGATTTCAAAAGAAGAGTATGCAAAAATTGGGAGTGTGGCTCTTACTAATACCTTAAAGGAAAGACTGATAAAAGAAGGAAGAAGGCCATATGTCATTCCTGTTGGTGGATCAGACTCCCTCGGAACTTGGGGATATATTCAAGCGATTCGAGAGATTGAGCAGCAGCTTCACAGTGGGGCTGGCAAAGTAAAGTTTGATGATATTGTTGTAGCATGTGGAAGTGGGGGTACAATTGCGGGTTTGTCATTGGGGTCTCGGCTGAGTTCATTGAAGGCAAAAGTTCATGCATTCTCTGTCTGCGATGACCCTGATTACTTCTACGACTTTGTTCAAGGCTTACTTGATGGACTTGAAGCAGGCGTTGATTCACGTAATATTGTTAACATTCAAAATGTGAGTGTCAGAGCAGATCAGATTAGATTTTCCTTAATTTTTTTTTTCTTATTTAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009507 GO:0009536 GO:0009692 GO:0009693 GO:0009987 GO:0010035 GO:0010038 GO:0010817 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019447 GO:0019478 GO:0019752 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044273 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046416 GO:0046438 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

361

Amino Acids

39.55

Weight (kDa)

8.92

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	95 - 333	8.1e-26	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48420 AT1G48420 AT1G48420
fragaria_vesca	FvH4_5g18020 FvH4_5g18030 FvH4_5g18030 FvH4_5g18030
malus_domestica	MD06G1235700.v1.1 MD14G1242800.v1.1
prunus_persica	Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.8G055600_v2.0.a1
pyrus_communis	pycom14g20400
rosa_chinensis	RchiOBHm_Chr7g0177581
rosa_laevigata	RLG00000005524
rosa_roxburghii	Rroxscaffold_3G00275740
rosa_rugosa	Rorug06G0407700
rosa_samantha	Rh7AG006800 Rh7BG006800 Rh7CG007300 Rh7DG006800
rosa_wichuraiana	Rw7G000580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	402
AciI	CCGC	2 cut(s)	390, 866
AclWI	GGATC	3 cut(s)	566, 573, 745
AcsI	RAATTY	2 cut(s)	27, 413
AfaI	GTAC	2 cut(s)	547, 859
AfiI	CCNNNNNNNGG	3 cut(s)	351, 409, 734
AgsI	TTSAA	8 cut(s)	358, 626, 636, 770, 901, 962, 983, 1019
AleI	CACNNNNGTG	1 cut(s)	489
AluBI	AGCT	5 cut(s)	21, 40, 385, 617, 796
AluI	AGCT	5 cut(s)	21, 40, 385, 617, 796
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	1 cut(s)	888
AlwI	GGATC	3 cut(s)	566, 573, 745
Ama87I	CYCGRG	1 cut(s)	373
Aor13HI	TCCGGA	1 cut(s)	402
AoxI	GGCC	1 cut(s)	713
ApeKI	GCWGC	6 cut(s)	18, 83, 382, 506, 790, 793
ApoI	RAATTY	2 cut(s)	27, 413
Asp700I	GAANNNNTTC	1 cut(s)	129
AsuC2I	CCSGG	2 cut(s)	576, 586
AsuHPI	GGTGA	4 cut(s)	68, 88, 225, 284
AvaI	CYCGRG	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	619
BarI	GAAGNNNNNNTAC	2 cut(s)	841, 873
BauI	CACGAG	1 cut(s)	560
Bbv12I	GWGCWC	1 cut(s)	619
BbvCI	CCTCAGC	1 cut(s)	36
BbvI	GCAGC	6 cut(s)	30, 70, 394, 493, 802, 805
BccI	CCATC	3 cut(s)	272, 415, 968
BceAI	ACGGC	1 cut(s)	416
BcnI	CCSGG	2 cut(s)	576, 586
BcoDI	GTCTC	1 cut(s)	888
BisI	GCNGC	7 cut(s)	19, 84, 383, 391, 507, 791, 794
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	7 cut(s)	20, 85, 384, 392, 508, 792, 795
Bme1390I	CCNGG	2 cut(s)	576, 586
BmeT110I	CYCGRG	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	590
BmrFI	CCNGG	2 cut(s)	576, 586
BmsI	GCATC	4 cut(s)	257, 369, 418, 480
BplI	GAGNNNNNCTC	2 cut(s)	652, 684
Bpu10I	CCTNAGC	1 cut(s)	36
Bpu1102I	GCTNAGC	1 cut(s)	386
BpuMI	CCSGG	2 cut(s)	576, 586
BsaAI	YACGTR	2 cut(s)	545, 1001
BsaBI	GATNNNNATC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	888
BsaJI	CCNNGG	2 cut(s)	345, 748
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	3 cut(s)	351, 409, 734
Bse8I	GATNNNNATC	1 cut(s)	570
BseAI	TCCGGA	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	345, 748
BseGI	GGATG	4 cut(s)	248, 264, 384, 471
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	3 cut(s)	351, 409, 734
BseMII	CTCAG	5 cut(s)	50, 201, 400, 550, 881
BseRI	GAGGAG	2 cut(s)	24, 50
BseXI	GCAGC	6 cut(s)	30, 70, 394, 493, 802, 805
BseYI	CCCAGC	2 cut(s)	193, 199
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	715
BsiHKAI	GWGCWC	1 cut(s)	619
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	3 cut(s)	403, 576, 585
BslI	CCNNNNNNNGG	3 cut(s)	351, 409, 734
BsmAI	GTCTC	1 cut(s)	888
BsmI	GAATGC	1 cut(s)	917
BsnI	GGCC	1 cut(s)	715
Bso31I	GGTCTC	1 cut(s)	888
BsoBI	CYCGRG	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp13I	TCCGGA	1 cut(s)	402
Bsp143I	GATC	5 cut(s)	367, 565, 571, 737, 1039
Bsp1720I	GCTNAGC	1 cut(s)	386
BspACI	CCGC	2 cut(s)	390, 866
BspANI	GGCC	1 cut(s)	715
BspCNI	CTCAG	5 cut(s)	49, 200, 399, 549, 882
BspEI	TCCGGA	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	590
BspPI	GGATC	3 cut(s)	566, 573, 745
BspTNI	GGTCTC	1 cut(s)	888
BssECI	CCNNGG	2 cut(s)	345, 748
BssMI	GATC	5 cut(s)	367, 565, 571, 737, 1039
BssSI	CACGAG	1 cut(s)	560
Bst2BI	CACGAG	1 cut(s)	560
Bst4CI	ACNGT	2 cut(s)	488, 803
Bst6I	CTCTTC	1 cut(s)	636
BstBAI	YACGTR	2 cut(s)	545, 1001
BstC8I	GCNNGC	2 cut(s)	811, 988
BstDEI	CTNAG	6 cut(s)	36, 187, 386, 536, 552, 890
BstEII	GGTNACC	1 cut(s)	290
BstF5I	GGATG	4 cut(s)	248, 264, 384, 471
BstKTI	GATC	5 cut(s)	370, 568, 574, 740, 1042
BstMAI	GTCTC	1 cut(s)	888
BstMBI	GATC	5 cut(s)	367, 565, 571, 737, 1039
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 506
BstNSI	RCATGY	1 cut(s)	846
BstPI	GGTNACC	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	574, 584
BstSNI	TACGTA	1 cut(s)	545
BstV1I	GCAGC	6 cut(s)	30, 70, 394, 493, 802, 805
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	1 cut(s)	715
BtgZI	GCGATG	1 cut(s)	945
BtsCI	GGATG	4 cut(s)	248, 264, 384, 471
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	3 cut(s)	19, 484, 808
Cac8I	GCNNGC	2 cut(s)	811, 988
Csp6I	GTAC	2 cut(s)	546, 858
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	2 cut(s)	843, 914
CviQI	GTAC	2 cut(s)	546, 858
DdeI	CTNAG	6 cut(s)	36, 187, 386, 536, 552, 890
DpnI	GATC	5 cut(s)	369, 567, 573, 739, 1041
DpnII	GATC	5 cut(s)	367, 565, 571, 737, 1039
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Ecl136II	GAGCTC	1 cut(s)	617
Eco105I	TACGTA	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	619
Eco31I	GGTCTC	1 cut(s)	888
Eco53kI	GAGCTC	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	373
Eco91I	GGTNACC	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	617
EcoO65I	GGTNACC	1 cut(s)	290
EcoRI	GAATTC	2 cut(s)	27, 413
EcoT22I	ATGCAT	1 cut(s)	919
EcoT38I	GRGCYC	1 cut(s)	619
FaeI	CATG	2 cut(s)	846, 917
FalI	AAGNNNNNCTT	2 cut(s)	954, 986
FatI	CATG	2 cut(s)	842, 913
FauI	CCCGC	1 cut(s)	859
FauNDI	CATATG	1 cut(s)	718
Fnu4HI	GCNGC	7 cut(s)	19, 84, 383, 391, 507, 791, 794
FokI	GGATG	4 cut(s)	235, 251, 391, 458
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	7 cut(s)	19, 84, 383, 391, 507, 791, 794
GluI	GCNGC	7 cut(s)	19, 84, 383, 391, 507, 791, 794
GsaI	CCCAGC	2 cut(s)	197, 203
HaeIII	GGCC	1 cut(s)	715
HapII	CCGG	3 cut(s)	403, 576, 585
Hin1II	CATG	2 cut(s)	846, 917
HincII	GTYRAC	1 cut(s)	1012
HindII	GTYRAC	1 cut(s)	1012
HinfI	GANTC	6 cut(s)	136, 319, 527, 743, 775, 995
HpaI	GTTAAC	1 cut(s)	1012
HpaII	CCGG	3 cut(s)	403, 576, 585
HphI	GGTGA	4 cut(s)	68, 88, 225, 284
Hpy166II	GTNNAC	3 cut(s)	157, 542, 1012
Hpy188I	TCNGA	7 cut(s)	26, 135, 614, 742, 752, 1034, 1044
Hpy188III	TCNNGA	5 cut(s)	403, 418, 524, 569, 779
Hpy8I	GTNNAC	3 cut(s)	157, 542, 1012
HpyAV	CCTTC	8 cut(s)	81, 249, 289, 305, 602, 698, 705, 895
HpyCH4III	ACNGT	2 cut(s)	488, 803
HpyCH4IV	ACGT	2 cut(s)	544, 1000
HpyCH4V	TGCA	7 cut(s)	12, 86, 382, 494, 509, 650, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 506
HpyF3I	CTNAG	6 cut(s)	36, 187, 386, 536, 552, 890
HpySE526I	ACGT	2 cut(s)	544, 1000
Hsp92II	CATG	2 cut(s)	846, 917
Kpn2I	TCCGGA	1 cut(s)	402
KspAI	GTTAAC	1 cut(s)	1012
Kzo9I	GATC	5 cut(s)	367, 565, 571, 737, 1039
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	6 cut(s)	30, 70, 394, 493, 802, 805
LweI	GCATC	4 cut(s)	257, 369, 418, 480
MaeII	ACGT	2 cut(s)	544, 1000
MaeIII	GTNAC	2 cut(s)	290, 479
MalI	GATC	5 cut(s)	369, 567, 573, 739, 1041
MboI	GATC	5 cut(s)	367, 565, 571, 737, 1039
MboII	GAAGA	3 cut(s)	314, 653, 720
MfeI	CAATTG	1 cut(s)	861
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	8 cut(s)	27, 328, 407, 413, 626, 654, 861, 1059
MlyI	GAGTC	2 cut(s)	521, 737
MmeI	TCCRAC	1 cut(s)	592
Mph1103I	ATGCAT	1 cut(s)	919
MroI	TCCGGA	1 cut(s)	402
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	4 cut(s)	683, 1011, 1058, 1077
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	3 cut(s)	403, 576, 585
MspR9I	CCNGG	2 cut(s)	576, 586
MunI	CAATTG	1 cut(s)	861
Mva1269I	GAATGC	1 cut(s)	917
MwoI	GCNNNNNNNGC	2 cut(s)	18, 506
NciI	CCSGG	2 cut(s)	576, 586
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	5 cut(s)	367, 565, 571, 737, 1039
NlaIII	CATG	2 cut(s)	846, 917
NlaIV	GGNNCC	1 cut(s)	590
NmeAIII	GCCGAG	1 cut(s)	865
NmuCI	GTSAC	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	919
NspI	RCATGY	1 cut(s)	846
OliI	CACNNNNGTG	1 cut(s)	489
PctI	GAATGC	1 cut(s)	917
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	4 cut(s)	136, 319, 775, 995
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	7 cut(s)	20, 85, 384, 392, 508, 792, 795
PleI	GAGTC	2 cut(s)	521, 737
PpsI	GAGTC	2 cut(s)	521, 737
Ppu21I	YACGTR	2 cut(s)	545, 1001
Psp124BI	GAGCTC	1 cut(s)	619
PspEI	GGTNACC	1 cut(s)	290
PspFI	CCCAGC	2 cut(s)	193, 199
PspN4I	GGNNCC	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	2 cut(s)	547, 859
RsaNI	GTAC	2 cut(s)	546, 858
RseI	CAYNNNNRTG	1 cut(s)	489
SacI	GAGCTC	1 cut(s)	619
SaqAI	TTAA	4 cut(s)	683, 1011, 1058, 1077
SatI	GCNGC	7 cut(s)	19, 84, 383, 391, 507, 791, 794
Sau3AI	GATC	5 cut(s)	367, 565, 571, 737, 1039
SchI	GAGTC	2 cut(s)	521, 737
ScrFI	CCNGG	2 cut(s)	576, 586
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	4 cut(s)	257, 369, 418, 480
SmiMI	CAYNNNNRTG	1 cut(s)	489
SnaBI	TACGTA	1 cut(s)	545
Sse9I	AATT	8 cut(s)	27, 328, 407, 413, 626, 654, 861, 1059
SsiI	CCGC	2 cut(s)	390, 866
SspI	AATATT	1 cut(s)	1006
SstI	GAGCTC	1 cut(s)	619
StyD4I	CCNGG	2 cut(s)	574, 584
TaaI	ACNGT	2 cut(s)	488, 803
TaiI	ACGT	2 cut(s)	547, 1003
TaqI	TCGA	2 cut(s)	525, 778
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	8 cut(s)	27, 328, 407, 413, 626, 654, 861, 1059
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	4 cut(s)	136, 319, 775, 995
Tru1I	TTAA	4 cut(s)	683, 1011, 1058, 1077
Tru9I	TTAA	4 cut(s)	683, 1011, 1058, 1077
TscAI	CASTG	3 cut(s)	19, 491, 808
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	6 cut(s)	18, 83, 382, 506, 790, 793
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	885, 902
TspRI	CASTG	3 cut(s)	19, 491, 808
XapI	RAATTY	2 cut(s)	27, 413
XceI	RCATGY	1 cut(s)	846
XcmI	CCANNNNNNNNNTGG	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.