Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007898

Physical Location & Seq

Genomic Coordinates Reverse (-)

10363942 .. 10367387

Gene Structure 3446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18030.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGTTGTGCAGGGGCATCAGCAAAGCCCTCCTCATTTTCCCTTCTCACTCTGCTCCCCTCACTCTCACCCAACCCAAACACAAACACAAACACAAACCCCTCCAGATTCACTCGCAAATGGAACTCAACACTTCAGAAGCAAAGACAGGACAGGGTTTGGGGCTGGACTTCCTCTCAAAGAAGCCATATACTCCTCCTTCTTGGGCATCCCACATCAACCCCATCCCCTCTCACACCTTCTCTCTCGGTCACCTTCCCACTCCAATCCACAAATGGAATCTTCCCAATTTGCCCAACAACACTGAGGTCTGGCTGAAGCGAGATGATCTTTCCGGGATGCAGCTCAGCGGTAACAAAGTCAGGAAATTGGAGTTTCTGATGGCCGATGCTGTCGAAAAGGGCGCGGATTGTATTATAACCATAGGGGGAATCCAAAGCAACCACTGCCGTGCGACTGCTGTGGCTGCCAAGTATCTCAATCTTGACTCCTATCTCATTTTACGTACCTCTAAGGTTCTTGTGGACCAAGATCCTGGACTCACCGGGAACCTTCTAGTTGAGCGTTTAGTCGGAGCTCATATTGAATTGATTTCAAAAGAAGAGTATGCAAAAATTGGGAGTGTGGCTCTTACTAATACTTTAAAGGAAAGACTGATAAAAGAAGGAAGAAGGCCATATGTCATTCCTGTTGGTGGTTCAGACTCCCTTGGAACCTGGGGATATATTGAAGCAATTCAAGAGATTGAGCAGCAGCTTCACTGTGGGACTGGCAAACTAAAGTTTGATGATATTGTTGTAGCATGTGGAAGTGGGGGTACAATTGCTGGTTTGTCATTGGGATCTTGGCTGAGTTCGTTGAAGGCAAAAGTTCATGCATTCTCTGTCTGTGATGACCCTGATTACTTCTATGACTTTGTTCAAGGCCTACTTGATGGACTTGAAGCAGGCGTTGATTCACGACATATTATTAACATTCAAAATGCCAAGGGTCTAGGCTATGCAATCAACACTGCTGAGGAGCTTACTTTTGTGAAGGAGATTGCCGCAACCACTGGGGTTATTTTAGATCCAGTTTACAGTGGCAAAGCTGCTTATGGGTTGCTGAAGGACTTTGCCGAGAATCCAAAGAAGTGGGAAGGAAGAAAGATCCTCTTCATACACACAGGTGGGCTGCTTGGGTTGTTTGATAAGGTCGAGCAGATTGCTCCATCATTGGGAAAATACAGTCGGATGGATGTCTGCGATTCTGTTCCACGGAAGGATGGTATCGGCAAAATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009507 GO:0009536 GO:0009692 GO:0009693 GO:0009987 GO:0010035 GO:0010038 GO:0010817 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019447 GO:0019478 GO:0019752 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044273 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046416 GO:0046438 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

428

Amino Acids

46.65

Weight (kDa)

8.31

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	81 - 316	2e-25	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48420 AT1G48420 AT1G48420
fragaria_vesca	FvH4_5g18020 FvH4_5g18030 FvH4_5g18030 FvH4_5g18030
malus_domestica	MD06G1235700.v1.1 MD14G1242800.v1.1
prunus_persica	Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.8G055600_v2.0.a1
pyrus_communis	pycom14g20400
rosa_chinensis	RchiOBHm_Chr7g0177581
rosa_laevigata	RLG00000005524
rosa_roxburghii	Rroxscaffold_3G00275740
rosa_rugosa	Rorug06G0407700
rosa_samantha	Rh7AG006800 Rh7BG006800 Rh7CG007300 Rh7DG006800
rosa_wichuraiana	Rw7G000580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	416
AccII	CGCG	1 cut(s)	404
AciI	CCGC	3 cut(s)	348, 404, 1044
AclWI	GGATC	4 cut(s)	524, 847, 1061, 1141
AcoI	YGGCCR	1 cut(s)	381
AcuI	CTGAAG	3 cut(s)	117, 335, 1124
AfaI	GTAC	2 cut(s)	505, 817
AfiI	CCNNNNNNNGG	2 cut(s)	692, 1214
AgsI	TTSAA	8 cut(s)	584, 594, 728, 737, 859, 920, 941, 977
AjnI	CCWGG	2 cut(s)	532, 713
AleI	CACNNNNGTG	2 cut(s)	447, 1164
AluBI	AGCT	5 cut(s)	343, 575, 754, 1021, 1088
AluI	AGCT	5 cut(s)	343, 575, 754, 1021, 1088
Alw21I	GWGCWC	1 cut(s)	577
AlwI	GGATC	4 cut(s)	524, 847, 1061, 1141
AoxI	GGCC	3 cut(s)	381, 671, 922
ApeKI	GCWGC	6 cut(s)	340, 464, 748, 751, 1088, 1171
Asp700I	GAANNNNTTC	1 cut(s)	732
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	523
AsuC2I	CCSGG	2 cut(s)	334, 544
AsuHPI	GGTGA	3 cut(s)	58, 242, 532
AvaII	GGWCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	577
BarI	GAAGNNNNNNTAC	2 cut(s)	799, 831
Bbv12I	GWGCWC	1 cut(s)	577
BbvCI	CCTCAGC	1 cut(s)	1014
BbvI	GCAGC	6 cut(s)	352, 451, 760, 763, 1075, 1158
BccI	CCATC	6 cut(s)	230, 373, 926, 1216, 1225, 1256
BceAI	ACGGC	1 cut(s)	432
BcgI	CGANNNNNNTGC	2 cut(s)	1184, 1218
BciT130I	CCWGG	2 cut(s)	534, 715
BcnI	CCSGG	2 cut(s)	334, 544
BfaI	CTAG	3 cut(s)	554, 992, 1282
BisI	GCNGC	7 cut(s)	341, 465, 749, 752, 1044, 1089, 1172
BlpI	GCTNAGC	1 cut(s)	344
BlsI	GCNGC	7 cut(s)	342, 466, 750, 753, 1045, 1090, 1173
Bme1390I	CCNGG	4 cut(s)	334, 534, 544, 715
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	2 cut(s)	548, 712
BmrFI	CCNGG	4 cut(s)	334, 534, 544, 715
BmrI	ACTGGG	1 cut(s)	1062
BmsI	GCATC	4 cut(s)	24, 215, 327, 376
BmuI	ACTGGG	1 cut(s)	1062
BplI	GAGNNNNNCTC	2 cut(s)	610, 642
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	1014
Bpu1102I	GCTNAGC	1 cut(s)	344
BpuMI	CCSGG	2 cut(s)	334, 544
BsaAI	YACGTR	1 cut(s)	503
BsaJI	CCNNGG	4 cut(s)	706, 714, 984, 1253
Bsc4I	CCNNNNNNNGG	2 cut(s)	692, 1214
Bse1I	ACTGG	3 cut(s)	772, 1057, 1070
BseBI	CCWGG	2 cut(s)	534, 715
BseDI	CCNNGG	4 cut(s)	706, 714, 984, 1253
BseGI	GGATG	6 cut(s)	206, 222, 342, 1236, 1240, 1267
BseLI	CCNNNNNNNGG	2 cut(s)	692, 1214
BseMII	CTCAG	4 cut(s)	294, 358, 839, 1005
BseNI	ACTGG	3 cut(s)	772, 1057, 1070
BseRI	GAGGAG	3 cut(s)	20, 183, 1031
BseXI	GCAGC	6 cut(s)	352, 451, 760, 763, 1075, 1158
BsgI	GTGCAG	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	3 cut(s)	383, 673, 924
BsiHKAI	GWGCWC	1 cut(s)	577
BsiSI	CCGG	2 cut(s)	333, 543
BslFI	GGGAC	1 cut(s)	778
BslI	CCNNNNNNNGG	2 cut(s)	692, 1214
BsmFI	GGGAC	1 cut(s)	778
BsmI	GAATGC	1 cut(s)	875
BsnI	GGCC	3 cut(s)	383, 673, 924
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	5 cut(s)	325, 529, 839, 1066, 1146
Bsp1720I	GCTNAGC	1 cut(s)	344
BspACI	CCGC	3 cut(s)	348, 404, 1044
BspANI	GGCC	3 cut(s)	383, 673, 924
BspCNI	CTCAG	4 cut(s)	295, 357, 840, 1006
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	2 cut(s)	548, 712
BspPI	GGATC	4 cut(s)	524, 847, 1061, 1141
BsrI	ACTGG	3 cut(s)	772, 1057, 1070
BssECI	CCNNGG	4 cut(s)	706, 714, 984, 1253
BssMI	GATC	5 cut(s)	325, 529, 839, 1066, 1146
BssT1I	CCWWGG	2 cut(s)	706, 984
Bst2UI	CCWGG	2 cut(s)	534, 715
Bst4CI	ACNGT	3 cut(s)	761, 1079, 1226
Bst6I	CTCTTC	2 cut(s)	594, 1157
BstAPI	GCANNNNNTGC	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	946
BstDEI	CTNAG	5 cut(s)	303, 344, 510, 848, 1014
BstDSI	CCRYGG	1 cut(s)	1253
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	6 cut(s)	206, 222, 342, 1236, 1240, 1267
BstFNI	CGCG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	5 cut(s)	328, 532, 842, 1069, 1149
BstMBI	GATC	5 cut(s)	325, 529, 839, 1066, 1146
BstMWI	GCNNNNNNNGC	2 cut(s)	444, 464
BstNI	CCWGG	2 cut(s)	534, 715
BstNSI	RCATGY	1 cut(s)	804
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	4 cut(s)	332, 532, 542, 713
BstSNI	TACGTA	1 cut(s)	503
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	6 cut(s)	352, 451, 760, 763, 1075, 1158
BstX2I	RGATCY	4 cut(s)	529, 839, 1066, 1146
BstXI	CCANNNNNNTGG	2 cut(s)	533, 1131
BstYI	RGATCY	4 cut(s)	529, 839, 1066, 1146
BsuRI	GGCC	3 cut(s)	383, 673, 924
BtgI	CCRYGG	1 cut(s)	1253
BtsCI	GGATG	6 cut(s)	206, 222, 342, 1236, 1240, 1267
BtsI	GCAGTG	2 cut(s)	442, 1008
BtsIMutI	CAGTG	6 cut(s)	300, 442, 757, 1008, 1050, 1084
Cac8I	GCNNGC	1 cut(s)	946
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	523
Csp6I	GTAC	2 cut(s)	504, 816
CviAII	CATG	2 cut(s)	801, 872
CviQI	GTAC	2 cut(s)	504, 816
DdeI	CTNAG	5 cut(s)	303, 344, 510, 848, 1014
DpnI	GATC	5 cut(s)	327, 531, 841, 1068, 1148
DpnII	GATC	5 cut(s)	325, 529, 839, 1066, 1146
DraI	TTTAAA	1 cut(s)	642
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	594, 1157
EarI	CTCTTC	2 cut(s)	594, 1157
Ecl136II	GAGCTC	1 cut(s)	575
Eco105I	TACGTA	1 cut(s)	503
Eco130I	CCWWGG	2 cut(s)	706, 984
Eco147I	AGGCCT	1 cut(s)	924
Eco24I	GRGCYC	1 cut(s)	577
Eco47I	GGWCC	1 cut(s)	523
Eco53kI	GAGCTC	1 cut(s)	575
Eco57I	CTGAAG	3 cut(s)	117, 335, 1124
Eco91I	GGTNACC	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	575
EcoO65I	GGTNACC	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	532, 713
EcoT14I	CCWWGG	2 cut(s)	706, 984
EcoT22I	ATGCAT	1 cut(s)	877
EcoT38I	GRGCYC	1 cut(s)	577
ErhI	CCWWGG	2 cut(s)	706, 984
FaeI	CATG	2 cut(s)	804, 875
FalI	AAGNNNNNCTT	4 cut(s)	912, 944, 1136, 1168
FaqI	GGGAC	1 cut(s)	778
FatI	CATG	2 cut(s)	800, 871
FauNDI	CATATG	1 cut(s)	676
Fnu4HI	GCNGC	7 cut(s)	341, 465, 749, 752, 1044, 1089, 1172
FokI	GGATG	6 cut(s)	193, 209, 349, 1243, 1247, 1274
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	7 cut(s)	341, 465, 749, 752, 1044, 1089, 1172
FspBI	CTAG	3 cut(s)	554, 992, 1282
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	7 cut(s)	341, 465, 749, 752, 1044, 1089, 1172
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	383, 673, 924
HapII	CCGG	2 cut(s)	333, 543
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	804, 875
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	9 cut(s)	106, 277, 429, 485, 537, 701, 953, 1120, 1244
HpaII	CCGG	2 cut(s)	333, 543
HphI	GGTGA	3 cut(s)	58, 242, 532
Hpy166II	GTNNAC	2 cut(s)	523, 1075
Hpy188I	TCNGA	5 cut(s)	136, 378, 572, 700, 1230
Hpy188III	TCNNGA	5 cut(s)	103, 361, 482, 737, 957
Hpy8I	GTNNAC	2 cut(s)	523, 1075
HpyCH4III	ACNGT	3 cut(s)	761, 1079, 1226
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	5 cut(s)	9, 340, 608, 875, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	444, 464
HpyF3I	CTNAG	5 cut(s)	303, 344, 510, 848, 1014
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	2 cut(s)	804, 875
HspAI	GCGC	1 cut(s)	402
Kzo9I	GATC	5 cut(s)	325, 529, 839, 1066, 1146
LmnI	GCTCC	4 cut(s)	58, 572, 1018, 1210
Lsp1109I	GCAGC	6 cut(s)	352, 451, 760, 763, 1075, 1158
LweI	GCATC	4 cut(s)	24, 215, 327, 376
MaeI	CTAG	3 cut(s)	554, 992, 1282
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	2 cut(s)	248, 350
MalI	GATC	5 cut(s)	327, 531, 841, 1068, 1148
MboI	GATC	5 cut(s)	325, 529, 839, 1066, 1146
MboII	GAAGA	5 cut(s)	272, 611, 678, 1144, 1152
MfeI	CAATTG	1 cut(s)	819
MflI	RGATCY	4 cut(s)	529, 839, 1066, 1146
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	6 cut(s)	286, 365, 584, 612, 732, 819
MlyI	GAGTC	3 cut(s)	479, 531, 695
MmeI	TCCRAC	2 cut(s)	550, 1208
Mph1103I	ATGCAT	1 cut(s)	877
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	2 cut(s)	641, 969
MslI	CAYNNNNRTG	2 cut(s)	447, 1164
MspA1I	CMGCKG	1 cut(s)	348
MspI	CCGG	2 cut(s)	333, 543
MspR9I	CCNGG	4 cut(s)	334, 534, 544, 715
MunI	CAATTG	1 cut(s)	819
Mva1269I	GAATGC	1 cut(s)	875
MvaI	CCWGG	2 cut(s)	534, 715
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	444, 464
NciI	CCSGG	2 cut(s)	334, 544
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	5 cut(s)	325, 529, 839, 1066, 1146
NlaIII	CATG	2 cut(s)	804, 875
NlaIV	GGNNCC	2 cut(s)	548, 712
NmeAIII	GCCGAG	1 cut(s)	1141
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	877
NspI	RCATGY	1 cut(s)	804
OliI	CACNNNNGTG	2 cut(s)	447, 1164
PceI	AGGCCT	1 cut(s)	924
PctI	GAATGC	1 cut(s)	875
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	6 cut(s)	106, 277, 429, 953, 1120, 1244
PfoI	TCCNGGA	2 cut(s)	332, 532
PkrI	GCNGC	7 cut(s)	342, 466, 750, 753, 1045, 1090, 1173
PleI	GAGTC	3 cut(s)	479, 531, 695
PpsI	GAGTC	3 cut(s)	479, 531, 695
Ppu21I	YACGTR	1 cut(s)	503
PsiI	TTATAA	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	577
Psp6I	CCWGG	2 cut(s)	532, 713
PspEI	GGTNACC	1 cut(s)	248
PspGI	CCWGG	2 cut(s)	532, 713
PspN4I	GGNNCC	2 cut(s)	548, 712
PspPI	GGNCC	1 cut(s)	523
PsuI	RGATCY	4 cut(s)	529, 839, 1066, 1146
RsaI	GTAC	2 cut(s)	505, 817
RsaNI	GTAC	2 cut(s)	504, 816
RseI	CAYNNNNRTG	2 cut(s)	447, 1164
SacI	GAGCTC	1 cut(s)	577
SaqAI	TTAA	2 cut(s)	641, 969
SatI	GCNGC	7 cut(s)	341, 465, 749, 752, 1044, 1089, 1172
Sau3AI	GATC	5 cut(s)	325, 529, 839, 1066, 1146
Sau96I	GGNCC	1 cut(s)	523
SchI	GAGTC	3 cut(s)	479, 531, 695
ScrFI	CCNGG	4 cut(s)	334, 534, 544, 715
SduI	GDGCHC	1 cut(s)	577
SfaNI	GCATC	4 cut(s)	24, 215, 327, 376
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	2 cut(s)	447, 1164
SnaBI	TACGTA	1 cut(s)	503
Sse9I	AATT	6 cut(s)	286, 365, 584, 612, 732, 819
SseBI	AGGCCT	1 cut(s)	924
SsiI	CCGC	3 cut(s)	348, 404, 1044
SspMI	CTAG	3 cut(s)	554, 992, 1282
SstI	GAGCTC	1 cut(s)	577
StuI	AGGCCT	1 cut(s)	924
StyD4I	CCNGG	4 cut(s)	332, 532, 542, 713
StyI	CCWWGG	2 cut(s)	706, 984
TaaI	ACNGT	3 cut(s)	761, 1079, 1226
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	2 cut(s)	393, 1194
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	6 cut(s)	286, 365, 584, 612, 732, 819
TauI	GCSGC	1 cut(s)	1046
TfiI	GAWTC	6 cut(s)	106, 277, 429, 953, 1120, 1244
Tru1I	TTAA	2 cut(s)	641, 969
Tru9I	TTAA	2 cut(s)	641, 969
TscAI	CASTG	6 cut(s)	307, 449, 764, 1015, 1057, 1084
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	6 cut(s)	340, 464, 748, 751, 1088, 1171
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	860, 1144
TspGWI	ACGGA	1 cut(s)	1270
TspRI	CASTG	6 cut(s)	307, 449, 764, 1015, 1057, 1084
VpaK11BI	GGWCC	1 cut(s)	523
XceI	RCATGY	1 cut(s)	804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	3 cut(s)	554, 992, 1282
Zsp2I	ATGCAT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.