Rw7G000580

1-aminocyclopropane-1-carboxylate deaminase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
486783 .. 490404
3622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000580.1

Sequence Viewer

Length: 1320 bp
ATGTTGTGTTGCAGTGGCAGCTTCCGAATTCCTCCTCAGCTTACCAAAAACAAAGCCCTCCTCATTTTCCCTTCTCGCCCTGCTGCACTCACTCTCACTCTCACCCAACCCAATAACAAACACAAACACAAAGCCTTTCAGATTCACTCACTAATGGAAGTGAACACTTCACACTCAAACTCAGGGCTGGGGCTGGGGCTGGACTTCCTCTCAAAGAAGCCATACTCACCTCCTTCTTGGGCATCCCACATCAGCCCCATCCCCTCTCACACCTTCTCTCTCGGTCACCTTCCCACTCCAATCCACAAATGGAATCTTCCTAATTTGCCCAACAACACCGAGGTCTGGTTGAAGCGCGATGATCTCTCGGGGATGCAGCTCAGCGGCAACAAAGTCCGGAAATTGGAATTCCTGATGGCAGATGCCGTCCAAAAGGGTGCTGATTGTATCATTACCATAGGGGGCATCCAAAGTAACCACTGTCGTGCAACTGCTGTGGCTGCAAACTATCTCAATCTCGACTCTTATCTCATTTTACGTACCTCTAAGGTTCTTGTGGATCAAGATCCCGGACTTACCGGAAACCTTTTGGTTGAGCGTTTAGTTGGAGCTCATATTGAATTGATTTCAAAAGAAGAGTATGCAAGAATTGGGAGTGTGGCTCTTACTAATACCTTAAGGGAAAGACTGATAAAAGAAGGAAGAAGGCCATATGTCATTCCTGTTGGTGGATCAGACTCCCTCGGAACTTGGGGATATATTCAAGCAATTCGAGAGATTGAGCAGCAGCTTCACAGTGGGGCTGGCAAAGTAAAGTTTGATGATATTGTTGTAGCATGTGGAAGTGGGGGTACAATTGCTGGTTTGTCATTGGGGTCTCGGCTGAGTTCATTGAAGGCAAAAGTTCATGCATTCTCTGTCTGCGATGACCCTGATTACTTCTACGACTTTGTTCAAGGCCTACTTGATGGACTTAAAGCAGGCATTGATTCACGTAATATTGTTAACATTCAAAATGCCAAGGGTTTAGGCTATGCAATTAACACCGCTGAGGAGCTTACTTTTGTGAAGGAGATTGCCGCTACCACTGGGGTTATCTTGGATCCAGTTTACAGTGGCAAAGCTGCTTATGGATTGCTGAAAGACATGGCTGAGAATCCAAAGAAGTGGGAAGGAAGAAAGATCCTCTTCATACACACAGGAGGGCTGCTCGGGTTGTTTGACAAGGTTGAGCAGATTGCTCCATCATTGGGAAAATACAGCCGGATGGATGTCTGCGAATCTGTTCCACGGAAGGATGGTATCGGGAAAATGTTCTAG

Protein Analysis

439

Amino Acids

47.81

Weight (kDa)

9.05

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 93 - 401 3.6e-35 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 357
AccIII TCCGGA 1 cut(s) 396
AciI CCGC 3 cut(s) 384, 1047, 1080
AclWI GGATC 6 cut(s) 560, 567, 739, 1097, 1110, 1177
AcsI RAATTY 2 cut(s) 27, 407
AfaI GTAC 2 cut(s) 541, 853
AfiI CCNNNNNNNGG 4 cut(s) 345, 403, 728, 1250
AflII CTTAAG 1 cut(s) 676
AgsI TTSAA 7 cut(s) 352, 620, 630, 764, 895, 956, 1013
AleI CACNNNNGTG 1 cut(s) 483
AluBI AGCT 7 cut(s) 21, 40, 379, 611, 790, 1057, 1124
AluI AGCT 7 cut(s) 21, 40, 379, 611, 790, 1057, 1124
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 1 cut(s) 882
AlwI GGATC 6 cut(s) 560, 567, 739, 1097, 1110, 1177
Ama87I CYCGRG 2 cut(s) 367, 1211
Aor13HI TCCGGA 1 cut(s) 396
AoxI GGCC 2 cut(s) 707, 958
ApeKI GCWGC 8 cut(s) 18, 83, 376, 500, 784, 787, 1124, 1207
ApoI RAATTY 2 cut(s) 27, 407
Asp700I GAANNNNTTC 2 cut(s) 1284, 1313
AspLEI GCGC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 3 cut(s) 94, 219, 278
AvaI CYCGRG 2 cut(s) 367, 1211
BamHI GGATCC 1 cut(s) 1102
BanII GRGCYC 1 cut(s) 613
BarI GAAGNNNNNNTAC 2 cut(s) 835, 867
Bbv12I GWGCWC 1 cut(s) 613
BbvCI CCTCAGC 2 cut(s) 36, 1050
BbvI GCAGC 8 cut(s) 30, 70, 388, 487, 796, 799, 1111, 1194
BccI CCATC 6 cut(s) 266, 409, 962, 1252, 1261, 1292
BceAI ACGGC 1 cut(s) 410
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 882
BfaI CTAG 1 cut(s) 1318
BfrI CTTAAG 1 cut(s) 676
BlpI GCTNAGC 1 cut(s) 380
Bme1390I CCNGG 1 cut(s) 570
BmeT110I CYCGRG 2 cut(s) 367, 1211
BmiI GGNNCC 1 cut(s) 1104
BmrFI CCNGG 1 cut(s) 570
BmrI ACTGGG 1 cut(s) 1098
BmsI GCATC 4 cut(s) 251, 363, 412, 474
BmuI ACTGGG 1 cut(s) 1098
BplI GAGNNNNNCTC 4 cut(s) 646, 678, 1194, 1226
Bpu10I CCTNAGC 2 cut(s) 36, 1050
Bpu1102I GCTNAGC 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 570
BsaAI YACGTR 2 cut(s) 539, 995
BsaBI GATNNNNATC 1 cut(s) 564
BsaI GGTCTC 1 cut(s) 882
BsaJI CCNNGG 4 cut(s) 339, 742, 1020, 1289
BsaWI WCCGGW 2 cut(s) 396, 578
Bsc4I CCNNNNNNNGG 4 cut(s) 345, 403, 728, 1250
Bse1I ACTGG 2 cut(s) 1093, 1106
Bse8I GATNNNNATC 1 cut(s) 564
BseAI TCCGGA 1 cut(s) 396
BseDI CCNNGG 4 cut(s) 339, 742, 1020, 1289
BseGI GGATG 7 cut(s) 242, 258, 378, 465, 1272, 1276, 1303
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 4 cut(s) 345, 403, 728, 1250
BseMII CTCAG 6 cut(s) 50, 195, 394, 875, 1041, 1143
BseNI ACTGG 2 cut(s) 1093, 1106
BseRI GAGGAG 3 cut(s) 24, 50, 1067
BseXI GCAGC 8 cut(s) 30, 70, 388, 487, 796, 799, 1111, 1194
BseYI CCCAGC 2 cut(s) 187, 193
BsgI GTGCAG 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 357
BshFI GGCC 2 cut(s) 709, 960
BsiHKAI GWGCWC 1 cut(s) 613
BsiHKCI CYCGRG 2 cut(s) 367, 1211
BsiSI CCGG 4 cut(s) 397, 570, 579, 1264
BslI CCNNNNNNNGG 4 cut(s) 345, 403, 728, 1250
BsmAI GTCTC 1 cut(s) 882
BsmI GAATGC 1 cut(s) 911
BsnI GGCC 2 cut(s) 709, 960
Bso31I GGTCTC 1 cut(s) 882
BsoBI CYCGRG 2 cut(s) 367, 1211
Bsp1286I GDGCHC 1 cut(s) 613
Bsp13I TCCGGA 1 cut(s) 396
Bsp143I GATC 6 cut(s) 361, 559, 565, 731, 1102, 1182
Bsp1720I GCTNAGC 1 cut(s) 380
BspACI CCGC 3 cut(s) 384, 1047, 1080
BspANI GGCC 2 cut(s) 709, 960
BspCNI CTCAG 6 cut(s) 49, 194, 393, 876, 1042, 1144
BspEI TCCGGA 1 cut(s) 396
BspFNI CGCG 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 1104
BspPI GGATC 6 cut(s) 560, 567, 739, 1097, 1110, 1177
BspTI CTTAAG 1 cut(s) 676
BspTNI GGTCTC 1 cut(s) 882
BsrI ACTGG 2 cut(s) 1093, 1106
BssECI CCNNGG 4 cut(s) 339, 742, 1020, 1289
BssMI GATC 6 cut(s) 361, 559, 565, 731, 1102, 1182
BssT1I CCWWGG 1 cut(s) 1020
Bst4CI ACNGT 3 cut(s) 482, 797, 1115
Bst6I CTCTTC 2 cut(s) 630, 1193
BstAFI CTTAAG 1 cut(s) 676
BstBAI YACGTR 2 cut(s) 539, 995
BstC8I GCNNGC 2 cut(s) 805, 982
BstDEI CTNAG 7 cut(s) 36, 181, 380, 546, 884, 1050, 1152
BstDSI CCRYGG 1 cut(s) 1289
BstEII GGTNACC 1 cut(s) 284
BstF5I GGATG 7 cut(s) 242, 258, 378, 465, 1272, 1276, 1303
BstFNI CGCG 1 cut(s) 357
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 6 cut(s) 364, 562, 568, 734, 1105, 1185
BstMAI GTCTC 1 cut(s) 882
BstMBI GATC 6 cut(s) 361, 559, 565, 731, 1102, 1182
BstMWI GCNNNNNNNGC 2 cut(s) 18, 500
BstNSI RCATGY 1 cut(s) 840
BstPI GGTNACC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 568
BstSNI TACGTA 1 cut(s) 539
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 8 cut(s) 30, 70, 388, 487, 796, 799, 1111, 1194
BstX2I RGATCY 3 cut(s) 565, 1102, 1182
BstXI CCANNNNNNTGG 1 cut(s) 1167
BstYI RGATCY 3 cut(s) 565, 1102, 1182
BsuRI GGCC 2 cut(s) 709, 960
BtgI CCRYGG 1 cut(s) 1289
BtgZI GCGATG 2 cut(s) 372, 939
BtsCI GGATG 7 cut(s) 242, 258, 378, 465, 1272, 1276, 1303
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 5 cut(s) 19, 478, 802, 1086, 1120
Cac8I GCNNGC 2 cut(s) 805, 982
CfoI GCGC 1 cut(s) 357
Csp6I GTAC 2 cut(s) 540, 852
CspCI CAANNNNNGTGG 2 cut(s) 477, 512
CviAII CATG 3 cut(s) 837, 908, 1147
CviQI GTAC 2 cut(s) 540, 852
DdeI CTNAG 7 cut(s) 36, 181, 380, 546, 884, 1050, 1152
DpnI GATC 6 cut(s) 363, 561, 567, 733, 1104, 1184
DpnII GATC 6 cut(s) 361, 559, 565, 731, 1102, 1182
Eam1104I CTCTTC 2 cut(s) 630, 1193
EarI CTCTTC 2 cut(s) 630, 1193
Ecl136II GAGCTC 1 cut(s) 611
Eco105I TACGTA 1 cut(s) 539
Eco130I CCWWGG 1 cut(s) 1020
Eco147I AGGCCT 1 cut(s) 960
Eco24I GRGCYC 1 cut(s) 613
Eco31I GGTCTC 1 cut(s) 882
Eco53kI GAGCTC 1 cut(s) 611
Eco88I CYCGRG 2 cut(s) 367, 1211
Eco91I GGTNACC 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 611
EcoO65I GGTNACC 1 cut(s) 284
EcoRI GAATTC 2 cut(s) 27, 407
EcoT14I CCWWGG 1 cut(s) 1020
EcoT22I ATGCAT 1 cut(s) 913
EcoT38I GRGCYC 1 cut(s) 613
ErhI CCWWGG 1 cut(s) 1020
FaeI CATG 3 cut(s) 840, 911, 1150
FalI AAGNNNNNCTT 4 cut(s) 948, 980, 1172, 1204
FatI CATG 3 cut(s) 836, 907, 1146
FauNDI CATATG 1 cut(s) 712
FokI GGATG 7 cut(s) 229, 245, 385, 452, 1279, 1283, 1310
FriOI GRGCYC 1 cut(s) 613
FspBI CTAG 1 cut(s) 1318
GlaI GCGC 1 cut(s) 356
GsaI CCCAGC 2 cut(s) 191, 197
HaeIII GGCC 2 cut(s) 709, 960
HapII CCGG 4 cut(s) 397, 570, 579, 1264
HhaI GCGC 1 cut(s) 357
Hin1II CATG 3 cut(s) 840, 911, 1150
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HincII GTYRAC 1 cut(s) 1006
HindII GTYRAC 1 cut(s) 1006
HinfI GANTC 7 cut(s) 142, 313, 521, 737, 989, 1156, 1280
HpaI GTTAAC 1 cut(s) 1006
HpaII CCGG 4 cut(s) 397, 570, 579, 1264
HphI GGTGA 3 cut(s) 94, 219, 278
Hpy166II GTNNAC 3 cut(s) 163, 1006, 1111
Hpy188I TCNGA 4 cut(s) 26, 141, 736, 746
Hpy188III TCNNGA 6 cut(s) 397, 412, 518, 563, 773, 1306
Hpy8I GTNNAC 3 cut(s) 163, 1006, 1111
HpyCH4III ACNGT 3 cut(s) 482, 797, 1115
HpyCH4IV ACGT 2 cut(s) 538, 994
HpyCH4V TGCA 8 cut(s) 12, 86, 376, 488, 503, 644, 911, 1037
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 500
HpyF3I CTNAG 7 cut(s) 36, 181, 380, 546, 884, 1050, 1152
HpySE526I ACGT 2 cut(s) 538, 994
Hsp92II CATG 3 cut(s) 840, 911, 1150
HspAI GCGC 1 cut(s) 355
Kpn2I TCCGGA 1 cut(s) 396
KspAI GTTAAC 1 cut(s) 1006
Kzo9I GATC 6 cut(s) 361, 559, 565, 731, 1102, 1182
LmnI GCTCC 3 cut(s) 608, 1054, 1246
Lsp1109I GCAGC 8 cut(s) 30, 70, 388, 487, 796, 799, 1111, 1194
LweI GCATC 4 cut(s) 251, 363, 412, 474
MaeI CTAG 1 cut(s) 1318
MaeII ACGT 2 cut(s) 538, 994
MaeIII GTNAC 2 cut(s) 284, 473
MalI GATC 6 cut(s) 363, 561, 567, 733, 1104, 1184
MboI GATC 6 cut(s) 361, 559, 565, 731, 1102, 1182
MboII GAAGA 5 cut(s) 308, 647, 714, 1180, 1188
MfeI CAATTG 1 cut(s) 855
MflI RGATCY 3 cut(s) 565, 1102, 1182
MhlI GDGCHC 1 cut(s) 613
MluCI AATT 9 cut(s) 27, 322, 401, 407, 620, 648, 768, 855, 1038
MlyI GAGTC 2 cut(s) 515, 731
MmeI TCCRAC 1 cut(s) 586
Mph1103I ATGCAT 1 cut(s) 913
MroI TCCGGA 1 cut(s) 396
MroXI GAANNNNTTC 2 cut(s) 1284, 1313
MseI TTAA 4 cut(s) 677, 975, 1005, 1041
MslI CAYNNNNRTG 1 cut(s) 483
MspA1I CMGCKG 2 cut(s) 384, 1049
MspCI CTTAAG 1 cut(s) 676
MspI CCGG 4 cut(s) 397, 570, 579, 1264
MspR9I CCNGG 1 cut(s) 570
MunI CAATTG 1 cut(s) 855
Mva1269I GAATGC 1 cut(s) 911
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 2 cut(s) 18, 500
NciI CCSGG 1 cut(s) 570
NdeI CATATG 1 cut(s) 712
NdeII GATC 6 cut(s) 361, 559, 565, 731, 1102, 1182
NlaIII CATG 3 cut(s) 840, 911, 1150
NlaIV GGNNCC 1 cut(s) 1104
NmeAIII GCCGAG 1 cut(s) 859
NmuCI GTSAC 1 cut(s) 284
NsiI ATGCAT 1 cut(s) 913
NspI RCATGY 1 cut(s) 840
OliI CACNNNNGTG 1 cut(s) 483
PceI AGGCCT 1 cut(s) 960
PctI GAATGC 1 cut(s) 911
PdmI GAANNNNTTC 2 cut(s) 1284, 1313
PfeI GAWTC 5 cut(s) 142, 313, 989, 1156, 1280
PfoI TCCNGGA 1 cut(s) 568
PleI GAGTC 2 cut(s) 515, 731
PpsI GAGTC 2 cut(s) 515, 731
Ppu21I YACGTR 2 cut(s) 539, 995
Psp124BI GAGCTC 1 cut(s) 613
PspEI GGTNACC 1 cut(s) 284
PspFI CCCAGC 2 cut(s) 187, 193
PspN4I GGNNCC 1 cut(s) 1104
PsuI RGATCY 3 cut(s) 565, 1102, 1182
RsaI GTAC 2 cut(s) 541, 853
RsaNI GTAC 2 cut(s) 540, 852
RseI CAYNNNNRTG 1 cut(s) 483
SacI GAGCTC 1 cut(s) 613
SaqAI TTAA 4 cut(s) 677, 975, 1005, 1041
Sau3AI GATC 6 cut(s) 361, 559, 565, 731, 1102, 1182
SchI GAGTC 2 cut(s) 515, 731
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 1 cut(s) 613
SfaNI GCATC 4 cut(s) 251, 363, 412, 474
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 676
SmoI CTYRAG 1 cut(s) 676
SnaBI TACGTA 1 cut(s) 539
Sse9I AATT 9 cut(s) 27, 322, 401, 407, 620, 648, 768, 855, 1038
SseBI AGGCCT 1 cut(s) 960
SsiI CCGC 3 cut(s) 384, 1047, 1080
SspI AATATT 1 cut(s) 1000
SspMI CTAG 1 cut(s) 1318
SstI GAGCTC 1 cut(s) 613
StuI AGGCCT 1 cut(s) 960
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 1 cut(s) 1020
TaaI ACNGT 3 cut(s) 482, 797, 1115
TaiI ACGT 2 cut(s) 541, 997
TaqI TCGA 2 cut(s) 519, 772
TaqII GACCGA 1 cut(s) 272
TasI AATT 9 cut(s) 27, 322, 401, 407, 620, 648, 768, 855, 1038
TauI GCSGC 2 cut(s) 387, 1082
TfiI GAWTC 5 cut(s) 142, 313, 989, 1156, 1280
Tru1I TTAA 4 cut(s) 677, 975, 1005, 1041
Tru9I TTAA 4 cut(s) 677, 975, 1005, 1041
TscAI CASTG 5 cut(s) 19, 485, 802, 1093, 1120
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 8 cut(s) 18, 83, 376, 500, 784, 787, 1124, 1207
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 3 cut(s) 879, 896, 1180
TspGWI ACGGA 1 cut(s) 1306
TspRI CASTG 5 cut(s) 19, 485, 802, 1093, 1120
Vha464I CTTAAG 1 cut(s) 676
XapI RAATTY 2 cut(s) 27, 407
XceI RCATGY 1 cut(s) 840
XcmI CCANNNNNNNNNTGG 1 cut(s) 306
XmnI GAANNNNTTC 2 cut(s) 1284, 1313
XspI CTAG 1 cut(s) 1318
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.