AT1G49510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010427
Physical Location & Seq
Forward (+)
18326846 .. 18328714
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49510.3

Sequence Viewer

Length: 723 bp
ATGGCGATGTCTCATCTCTTTCTTTCTTCTTCGCCTCAATCTTCACTGGCTCTGCGACTTCACTCGACGACCCAGTTCACGTTGAGCTACTCTAAGAACAATAAAGATTGTTCCTTTCAGAGTGCAAATGAAGCTAAAGTATCAAAGAGATCGTTGCTCTGTCGTGCAATTCATATGGAATCTGGACATTCAGGGGAACAACCAAAGAAGCTTAATTTCGATAATCTGTTGAGGAGAACCAAACATGTTTGGGATAATTCTCCACAGCCGGTTAAGGAATTTCCTTGGAATAGAGCATTCGGAAACTTCATACAGCTCGTTCTTGATCTCGCTATATCAGTCGTTAAGTTCTTGTTCGTTCCTATATTGGCGGTTTCTTCCATTAGTGAGATGTCTTATTGTGCTCATGAGAGGAAACTTGCTTTAGTCCCATTTCCATTAGTCATCGGTATGGTTGTCGCTGGCGTTCTACAAGAAACCGCTTTGAAGATCTCGCCTCGTCTTAAGGAAGCGGAAGTACCGTGGCATTTGATAGCTATGATGATGTTCTTCACTCTGATTAAGCTTCCTGGACCATATTACCCGTATTGGGGGCGTTTATTAGTTCCACATTTTGCAAATGGAGTATTACTTAGAGCACTTTGGTCCATGTTCTTTTGGTATAAGAAGACTAGAAACACATCAGGAAATCCTCTGCAGAATCACAGTTTGGAAACAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.38

Weight (kDa)

9.74

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010427)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49510 AT1G49510 AT1G49510
fragaria_vesca FvH4_2g06990 FvH4_2g07010
malus_domestica MD00G1050600.v1.1
prunus_persica Prupe.8G115700_v2.0.a1
pyrus_communis pycom05g06730
rosa_chinensis RchiOBHm_Chr6g0259351
rosa_laevigata RLG00000014537
rosa_multiflora Rmu_ssc0000050.1_g000059
rosa_roxburghii Rroxscaffold_7G00206590
rosa_rugosa Rorug05G0587800 Rorug05G0587900.1 Rorug05G0588000 Rorug05G0588100
rosa_samantha Rh6AG103800 Rh6BG097000 Rh6CG093200 Rh6DG087000
rosa_wichuraiana Rw6G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 371, 480, 512
AcsI RAATTY 1 cut(s) 278
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 2 cut(s) 589, 590
AflII CTTAAG 1 cut(s) 503
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 1 cut(s) 487
AjnI CCWGG 1 cut(s) 568
AjuI GAANNNNNNNTTGG 1 cut(s) 692
AluBI AGCT 6 cut(s) 87, 134, 211, 316, 536, 565
AluI AGCT 6 cut(s) 87, 134, 211, 316, 536, 565
Alw21I GWGCWC 2 cut(s) 406, 640
Alw26I GTCTC 1 cut(s) 15
ApoI RAATTY 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 572, 645
AvaII GGWCC 2 cut(s) 572, 645
BarI GAAGNNNNNNTAC 2 cut(s) 501, 533
BbsI GAAGAC 1 cut(s) 674
Bbv12I GWGCWC 2 cut(s) 406, 640
BciT130I CCWGG 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 672
BfmI CTRYAG 1 cut(s) 695
BfrI CTTAAG 1 cut(s) 503
BglII AGATCT 1 cut(s) 489
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 2 cut(s) 572, 645
BmgT120I GGNCC 2 cut(s) 572, 645
BmrFI CCNGG 1 cut(s) 570
BmrI ACTGGG 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 674
BsaJI CCNNGG 2 cut(s) 284, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 590
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 51, 73
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 284, 521
BseLI CCNNNNNNNGG 2 cut(s) 589, 590
BseNI ACTGG 2 cut(s) 51, 73
BseRI GAGGAG 1 cut(s) 247
BsiHKAI GWGCWC 2 cut(s) 406, 640
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 2 cut(s) 589, 590
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 413
BsmI GAATGC 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 406, 640
Bsp143I GATC 3 cut(s) 149, 325, 489
BspACI CCGC 3 cut(s) 371, 480, 512
BspHI TCATGA 1 cut(s) 406
BspMAI CTGCAG 1 cut(s) 699
BspTI CTTAAG 1 cut(s) 503
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 2 cut(s) 51, 73
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 284, 521
BssMI GATC 3 cut(s) 149, 325, 489
BssT1I CCWWGG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 2 cut(s) 522, 707
BstAFI CTTAAG 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 2 cut(s) 93, 632
BstDSI CCRYGG 1 cut(s) 521
BstKTI GATC 3 cut(s) 152, 328, 492
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 3 cut(s) 149, 325, 489
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 1 cut(s) 695
BstV2I GAAGAC 1 cut(s) 674
BstX2I RGATCY 1 cut(s) 489
BstYI RGATCY 1 cut(s) 489
BtgI CCRYGG 1 cut(s) 521
BtgZI GCGATG 1 cut(s) 20
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 463
CciI TCATGA 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 268
Cfr13I GGNCC 2 cut(s) 572, 645
Csp6I GTAC 1 cut(s) 518
CviAII CATG 3 cut(s) 245, 407, 649
CviJI RGCY 8 cut(s) 50, 87, 134, 211, 268, 316, 536, 565
CviKI_1 RGCY 8 cut(s) 50, 87, 134, 211, 268, 316, 536, 565
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 2 cut(s) 93, 632
DpnI GATC 3 cut(s) 151, 327, 491
DpnII GATC 3 cut(s) 149, 325, 489
Eco130I CCWWGG 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 572, 645
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 3 cut(s) 248, 410, 652
FaqI GGGAC 1 cut(s) 413
FatI CATG 3 cut(s) 244, 406, 648
FauNDI CATATG 1 cut(s) 174
FspBI CTAG 1 cut(s) 672
HapII CCGG 1 cut(s) 269
Hin1II CATG 3 cut(s) 248, 410, 652
HindIII AAGCTT 2 cut(s) 209, 563
HinfI GANTC 2 cut(s) 179, 700
HpaII CCGG 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 3 cut(s) 120, 302, 558
Hpy188III TCNNGA 4 cut(s) 183, 323, 407, 684
Hpy8I GTNNAC 1 cut(s) 78
Hpy99I CGWCG 1 cut(s) 70
HpyCH4III ACNGT 2 cut(s) 522, 707
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 125, 167, 617, 697
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 93, 632
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 3 cut(s) 248, 410, 652
Kzo9I GATC 3 cut(s) 149, 325, 489
LpnPI CCDG 9 cut(s) 32, 86, 168, 177, 282, 447, 555, 582, 669
MaeI CTAG 1 cut(s) 672
MaeII ACGT 1 cut(s) 80
MalI GATC 3 cut(s) 151, 327, 491
MboI GATC 3 cut(s) 149, 325, 489
MboII GAAGA 7 cut(s) 18, 21, 33, 369, 499, 541, 679
MflI RGATCY 1 cut(s) 489
MhlI GDGCHC 2 cut(s) 406, 640
MluCI AATT 4 cut(s) 168, 214, 256, 278
MnlI CCTC 5 cut(s) 45, 225, 405, 507, 702
MseI TTAA 5 cut(s) 213, 273, 345, 504, 561
MslI CAYNNNNRTG 1 cut(s) 449
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 570
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeI CATATG 1 cut(s) 174
NdeII GATC 3 cut(s) 149, 325, 489
NlaIII CATG 3 cut(s) 248, 410, 652
NspI RCATGY 1 cut(s) 248
PagI TCATGA 1 cut(s) 406
PciI ACATGT 1 cut(s) 244
PctI GAATGC 1 cut(s) 296
PfeI GAWTC 2 cut(s) 179, 700
PfoI TCCNGGA 1 cut(s) 568
PscI ACATGT 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 568
PspGI CCWGG 1 cut(s) 568
PspPI GGNCC 2 cut(s) 572, 645
PstI CTGCAG 1 cut(s) 699
PsuI RGATCY 1 cut(s) 489
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 5 cut(s) 213, 273, 345, 504, 561
Sau3AI GATC 3 cut(s) 149, 325, 489
Sau96I GGNCC 2 cut(s) 572, 645
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 2 cut(s) 406, 640
SetI ASST 7 cut(s) 83, 89, 136, 213, 318, 538, 567
SfcI CTRYAG 1 cut(s) 695
SinI GGWCC 2 cut(s) 572, 645
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 4 cut(s) 168, 214, 256, 278
SsiI CCGC 3 cut(s) 371, 480, 512
SspMI CTAG 1 cut(s) 672
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 522, 707
TaiI ACGT 1 cut(s) 83
TaqI TCGA 2 cut(s) 65, 219
TasI AATT 4 cut(s) 168, 214, 256, 278
TfiI GAWTC 2 cut(s) 179, 700
Tru1I TTAA 5 cut(s) 213, 273, 345, 504, 561
Tru9I TTAA 5 cut(s) 213, 273, 345, 504, 561
TscAI CASTG 1 cut(s) 51
TspDTI ATGAA 3 cut(s) 144, 161, 298
TspRI CASTG 1 cut(s) 51
Vha464I CTTAAG 1 cut(s) 503
VpaK11BI GGWCC 2 cut(s) 572, 645
XapI RAATTY 1 cut(s) 278
XceI RCATGY 1 cut(s) 248
XspI CTAG 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.