Rroxscaffold_7G00206590

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
56375351 .. 56378571
3221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206590.1

Sequence Viewer

Length: 294 bp
ATGGCTATTGCTGAAGTTTTAAAACTGGCAGCCTTGGATGTTTCTCCACTTCTGAAGGATGCAGAAGTTCCCTGGCATCTGTTTGTCATGGCAATTTTCTTCACACTGCTCAAATTGCCAGGACCATATTACCCATTCTGGGGCCGAATAATAATCCCACACATTGCCAATGGGGGTTTGGTAAGGACATTGTGGTTTGCATTTCTGTGGTACAGAAGACCTCGGAAGGCATCAACAACAGCATCATCACACCATTCTGACAGTGGCAGTCAATCTGAACCAAATGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.98

Weight (kDa)

9.22

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010427)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 33, 74
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 139, 140
AjnI CCWGG 2 cut(s) 71, 118
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 122, 142
AvaII GGWCC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 73, 120
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 2 cut(s) 73, 120
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 122, 142
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 2 cut(s) 73, 120
BmsI GCATC 4 cut(s) 49, 85, 239, 251
BpiI GAAGAC 1 cut(s) 223
BsaJI CCNNGG 3 cut(s) 33, 71, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 140
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 2 cut(s) 73, 120
BseDI CCNNGG 3 cut(s) 33, 71, 221
BseGI GGATG 2 cut(s) 43, 64
BseLI CCNNNNNNNGG 2 cut(s) 139, 140
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 41
BshFI GGCC 1 cut(s) 144
BslI CCNNNNNNNGG 2 cut(s) 139, 140
BsnI GGCC 1 cut(s) 144
BspANI GGCC 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 3 cut(s) 33, 71, 221
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 73, 120
Bst4CI ACNGT 1 cut(s) 263
BstF5I GGATG 2 cut(s) 43, 64
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNI CCWGG 2 cut(s) 73, 120
BstSCI CCNGG 2 cut(s) 71, 118
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 223
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 2 cut(s) 43, 64
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 104, 268
Cfr13I GGNCC 2 cut(s) 122, 142
Csp6I GTAC 1 cut(s) 211
CviAII CATG 1 cut(s) 88
CviJI RGCY 3 cut(s) 5, 32, 144
CviKI_1 RGCY 3 cut(s) 5, 32, 144
CviQI GTAC 1 cut(s) 211
DraI TTTAAA 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 2 cut(s) 33, 74
EcoRII CCWGG 2 cut(s) 71, 118
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 91
FaiI YATR 2 cut(s) 89, 127
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 2 cut(s) 50, 71
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 1 cut(s) 91
Hpy188I TCNGA 4 cut(s) 54, 225, 259, 277
HpyAV CCTTC 2 cut(s) 49, 220
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 62, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
Hsp92II CATG 1 cut(s) 91
LpnPI CCDG 6 cut(s) 11, 58, 85, 105, 124, 132
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 4 cut(s) 49, 85, 239, 251
MboII GAAGA 2 cut(s) 91, 228
MluCI AATT 2 cut(s) 93, 113
MnlI CCTC 1 cut(s) 231
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 205
MspR9I CCNGG 2 cut(s) 73, 120
MvaI CCWGG 2 cut(s) 73, 120
MwoI GCNNNNNNNGC 1 cut(s) 115
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 71, 118
PspGI CCWGG 2 cut(s) 71, 118
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 2 cut(s) 122, 142
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 205
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 1 cut(s) 30
Sau96I GGNCC 2 cut(s) 122, 142
ScrFI CCNGG 2 cut(s) 73, 120
SetI ASST 1 cut(s) 223
SfaNI GCATC 4 cut(s) 49, 85, 239, 251
SgeI CNNG 9 cut(s) 38, 46, 84, 85, 100, 131, 132, 151, 234
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 205
Sse9I AATT 2 cut(s) 93, 113
StyD4I CCNGG 2 cut(s) 71, 118
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 263
TasI AATT 2 cut(s) 93, 113
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 2 cut(s) 111, 268
TseI GCWGC 1 cut(s) 29
TspRI CASTG 2 cut(s) 111, 268
VpaK11BI GGWCC 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 2 cut(s) 175, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.