Rh6BG097000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010427
Physical Location & Seq
Reverse (-)
15188882 .. 15191901
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG097000.1

Sequence Viewer

Length: 774 bp
ATGACGACTCTCTATCCTTGTCACTTGTTCTCTGCTTCCGCCCACCTCCAGGCCTCCGCCAAATTCGCCGCCCTTAACAATAAGCCTCCCAATTCCATTCATGGCTTCAAGGGTTTGGCACAGTTTCGTGAAGTACATGCCTTTGGTGTGAGTGTTAAGCCTTCTGGTTTGCTTCAGAATTCCCGGTACAATCTCTCATGTGCTGTGAACATGACTGCTGGACAGTCGGACCCTGGGCAGATAAAATTTGATCACCTAATCGCTAAAGCAAGAAAGTTATGGGAAAGTTCTCCACAGCCAGTCAAGATGTTCCCTTGGAAAAGAGCAGGGCTTAACTTTATTCAACTCATCCTTGACCTTGTACTAGCAGTTGCTAAATACTTATGTGTACCTCTGCTAGTAGTTTCATCTCTTAGTGAGATGTCCTACTGTGCACAGGAAAGGAAGTTGTTTTTCGTTCCTGTACCTGTCATCATTGGAATGGCTATTGCTGAAGTTTTAAAACTGGCAGCCTTGGATGTTTCTCCACTTCTGAAGGATGCAGAAATTCCCTGGCATCTGTTTGGCATGGCAATTTTCTTCACACTGCTCAAATTGCCAGGTCCATATTACCCATTCTGGGGCCGAATAATAATCCCACACATTGCCAATGGGGGTTTGGTAAGGACATTGTGGTTTGCATTTCTGTGGTACAGAAGACCTCGGAAGGCATCAACAACAGCATCATCACACCAATCTGACAGTGGCAGTCAATCTGAACCAAATGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

28.55

Weight (kDa)

9.64

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010427)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49510 AT1G49510 AT1G49510
fragaria_vesca FvH4_2g06990 FvH4_2g07010
malus_domestica MD00G1050600.v1.1
prunus_persica Prupe.8G115700_v2.0.a1
pyrus_communis pycom05g06730
rosa_chinensis RchiOBHm_Chr6g0259351
rosa_laevigata RLG00000014537
rosa_multiflora Rmu_ssc0000050.1_g000059
rosa_roxburghii Rroxscaffold_7G00206590
rosa_rugosa Rorug05G0587800 Rorug05G0587900.1 Rorug05G0588000 Rorug05G0588100
rosa_samantha Rh6AG103800 Rh6BG097000 Rh6CG093200 Rh6DG087000
rosa_wichuraiana Rw6G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 39, 57, 69
AcsI RAATTY 4 cut(s) 62, 178, 245, 546
AcuI CTGAAG 3 cut(s) 158, 513, 554
AfaI GTAC 6 cut(s) 135, 188, 363, 390, 465, 692
AfiI CCNNNNNNNGG 3 cut(s) 49, 619, 620
AgsI TTSAA 2 cut(s) 109, 344
AjnI CCWGG 4 cut(s) 48, 232, 551, 598
Alw21I GWGCWC 1 cut(s) 436
Alw44I GTGCAC 1 cut(s) 432
AoxI GGCC 2 cut(s) 51, 622
ApaLI GTGCAC 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 509
ApoI RAATTY 4 cut(s) 62, 178, 245, 546
AspS9I GGNCC 3 cut(s) 229, 602, 622
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 2 cut(s) 229, 602
BaeGI GKGCMC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 703
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 1 cut(s) 521
BciT130I CCWGG 4 cut(s) 50, 234, 553, 600
BclI TGATCA 1 cut(s) 250
BcnI CCSGG 1 cut(s) 184
BfaI CTAG 2 cut(s) 365, 398
BisI GCNGC 2 cut(s) 69, 510
BlsI GCNGC 2 cut(s) 70, 511
Bme1390I CCNGG 5 cut(s) 50, 184, 234, 553, 600
Bme18I GGWCC 2 cut(s) 229, 602
BmgT120I GGNCC 3 cut(s) 229, 602, 622
BmiI GGNNCC 2 cut(s) 231, 623
BmrFI CCNGG 5 cut(s) 50, 184, 234, 553, 600
BmsI GCATC 4 cut(s) 529, 565, 719, 731
BpiI GAAGAC 1 cut(s) 703
BpmI CTGGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 184
BsaJI CCNNGG 6 cut(s) 232, 233, 314, 513, 551, 701
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 619, 620
Bse1I ACTGG 2 cut(s) 299, 510
Bse3DI GCAATG 1 cut(s) 642
BseBI CCWGG 4 cut(s) 50, 234, 553, 600
BseDI CCNNGG 6 cut(s) 232, 233, 314, 513, 551, 701
BseGI GGATG 3 cut(s) 348, 523, 544
BseLI CCNNNNNNNGG 3 cut(s) 49, 619, 620
BseMI GCAATG 1 cut(s) 642
BseNI ACTGG 2 cut(s) 299, 510
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 1 cut(s) 521
BshFI GGCC 2 cut(s) 53, 624
BsiHKAI GWGCWC 1 cut(s) 436
BsiSI CCGG 1 cut(s) 184
BslI CCNNNNNNNGG 3 cut(s) 49, 619, 620
BsnI GGCC 2 cut(s) 53, 624
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 1 cut(s) 250
BspACI CCGC 3 cut(s) 39, 57, 69
BspANI GGCC 2 cut(s) 53, 624
BspLI GGNNCC 2 cut(s) 231, 623
BsrDI GCAATG 1 cut(s) 642
BsrI ACTGG 2 cut(s) 299, 510
BssECI CCNNGG 6 cut(s) 232, 233, 314, 513, 551, 701
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 2 cut(s) 314, 513
Bst2UI CCWGG 4 cut(s) 50, 234, 553, 600
Bst4CI ACNGT 4 cut(s) 123, 225, 431, 743
BstDEI CTNAG 1 cut(s) 413
BstF5I GGATG 3 cut(s) 348, 523, 544
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 65, 595
BstNI CCWGG 4 cut(s) 50, 234, 553, 600
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 5 cut(s) 48, 182, 232, 551, 598
BstSLI GKGCMC 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 521
BstV2I GAAGAC 1 cut(s) 703
BsuRI GGCC 2 cut(s) 53, 624
BtsCI GGATG 3 cut(s) 348, 523, 544
BtsI GCAGTG 1 cut(s) 584
BtsIMutI CAGTG 2 cut(s) 584, 748
Cfr13I GGNCC 3 cut(s) 229, 602, 622
Csp6I GTAC 6 cut(s) 134, 187, 362, 389, 464, 691
CviAII CATG 5 cut(s) 101, 137, 198, 211, 568
CviJI RGCY 9 cut(s) 53, 85, 105, 160, 298, 331, 485, 512, 624
CviKI_1 RGCY 9 cut(s) 53, 85, 105, 160, 298, 331, 485, 512, 624
CviQI GTAC 6 cut(s) 134, 187, 362, 389, 464, 691
DdeI CTNAG 1 cut(s) 413
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
DraI TTTAAA 1 cut(s) 501
EciI GGCGGA 2 cut(s) 28, 46
Eco130I CCWWGG 2 cut(s) 314, 513
Eco147I AGGCCT 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 229, 602
Eco57I CTGAAG 3 cut(s) 158, 513, 554
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 4 cut(s) 48, 232, 551, 598
EcoT14I CCWWGG 2 cut(s) 314, 513
ErhI CCWWGG 2 cut(s) 314, 513
FaeI CATG 5 cut(s) 104, 140, 201, 214, 571
FaiI YATR 8 cut(s) 102, 138, 199, 212, 280, 385, 569, 607
FatI CATG 5 cut(s) 100, 136, 197, 210, 567
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 69, 510
FokI GGATG 3 cut(s) 335, 530, 551
Fsp4HI GCNGC 2 cut(s) 69, 510
FspBI CTAG 2 cut(s) 365, 398
GluI GCNGC 2 cut(s) 69, 510
GsuI CTGGAG 1 cut(s) 32
HaeIII GGCC 2 cut(s) 53, 624
HapII CCGG 1 cut(s) 184
Hin1II CATG 5 cut(s) 104, 140, 201, 214, 571
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 184
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 3 cut(s) 208, 389, 434
Hpy188I TCNGA 6 cut(s) 177, 229, 534, 705, 739, 757
Hpy188III TCNNGA 2 cut(s) 128, 304
Hpy8I GTNNAC 3 cut(s) 208, 389, 434
HpyAV CCTTC 3 cut(s) 171, 529, 700
HpyCH4III ACNGT 4 cut(s) 123, 225, 431, 743
HpyCH4V TGCA 3 cut(s) 434, 542, 680
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 595
HpyF3I CTNAG 1 cut(s) 413
Hsp92II CATG 5 cut(s) 104, 140, 201, 214, 571
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 1 cut(s) 250
Lsp1109I GCAGC 1 cut(s) 521
LweI GCATC 4 cut(s) 529, 565, 719, 731
MaeI CTAG 2 cut(s) 365, 398
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 2 cut(s) 571, 708
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 7 cut(s) 62, 91, 178, 245, 546, 573, 593
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 5 cut(s) 56, 64, 96, 402, 711
MseI TTAA 4 cut(s) 75, 156, 333, 500
MslI CAYNNNNRTG 2 cut(s) 479, 685
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 5 cut(s) 50, 184, 234, 553, 600
MvaI CCWGG 4 cut(s) 50, 234, 553, 600
MwoI GCNNNNNNNGC 2 cut(s) 65, 595
NciI CCSGG 1 cut(s) 184
NdeII GATC 1 cut(s) 250
NlaIII CATG 5 cut(s) 104, 140, 201, 214, 571
NlaIV GGNNCC 2 cut(s) 231, 623
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 140
PasI CCCWGGG 1 cut(s) 233
PceI AGGCCT 1 cut(s) 53
PkrI GCNGC 2 cut(s) 70, 511
Psp6I CCWGG 4 cut(s) 48, 232, 551, 598
PspGI CCWGG 4 cut(s) 48, 232, 551, 598
PspN4I GGNNCC 2 cut(s) 231, 623
PspPI GGNCC 3 cut(s) 229, 602, 622
RsaI GTAC 6 cut(s) 135, 188, 363, 390, 465, 692
RsaNI GTAC 6 cut(s) 134, 187, 362, 389, 464, 691
RseI CAYNNNNRTG 2 cut(s) 479, 685
SaqAI TTAA 4 cut(s) 75, 156, 333, 500
SatI GCNGC 2 cut(s) 69, 510
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 3 cut(s) 229, 602, 622
ScrFI CCNGG 5 cut(s) 50, 184, 234, 553, 600
SduI GDGCHC 1 cut(s) 436
SetI ASST 7 cut(s) 48, 258, 360, 394, 469, 604, 703
SfaNI GCATC 4 cut(s) 529, 565, 719, 731
SinI GGWCC 2 cut(s) 229, 602
SmiMI CAYNNNNRTG 2 cut(s) 479, 685
Sse9I AATT 7 cut(s) 62, 91, 178, 245, 546, 573, 593
SseBI AGGCCT 1 cut(s) 53
SsiI CCGC 3 cut(s) 39, 57, 69
SspMI CTAG 2 cut(s) 365, 398
StuI AGGCCT 1 cut(s) 53
StyD4I CCNGG 5 cut(s) 48, 182, 232, 551, 598
StyI CCWWGG 2 cut(s) 314, 513
TaaI ACNGT 4 cut(s) 123, 225, 431, 743
TasI AATT 7 cut(s) 62, 91, 178, 245, 546, 573, 593
TatI WGTACW 2 cut(s) 133, 361
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 4 cut(s) 75, 156, 333, 500
Tru9I TTAA 4 cut(s) 75, 156, 333, 500
TscAI CASTG 2 cut(s) 591, 748
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 89, 396
TspRI CASTG 2 cut(s) 591, 748
VneI GTGCAC 1 cut(s) 432
VpaK11BI GGWCC 2 cut(s) 229, 602
XapI RAATTY 4 cut(s) 62, 178, 245, 546
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 2 cut(s) 655, 740
XspI CTAG 2 cut(s) 365, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.