Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010427

Physical Location & Seq

Genomic Coordinates Reverse (-)

5761145 .. 5764066

Gene Structure 2922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGACGACTCTGTATCCTTGTCACTTGCTCTCTGCTTCGACCCATCTCCACGTCTCCGCCAAATTGGCCCTTCACAATAAACCCCCCAATTCCATTCATGGGTTCACGGCTTTGGCACAGTTTAGTGAAGTACATGCCTTTGGTCGGAGTGCTAAGCCTTCTCATTTGCTTCAGAATTCCCAGTACAATATCTCATGTGCTATGAATATGACTGCTGGACAGTCAGATGACCCTGGGCAGATTAAATTTGATCACCTAATCGCTAAAGCAAGAAAGTTGTGGGGTGGTTCTCCACAGCCAGATGCAGAAGTTCCCTGGCATCATTTTGTCATGGCAATTTTCTTCACACTGCTCAAATTGCCAGGTCCACATTACCCATGTTGTGGTCAAATAATAATCCCACACATTGCCAATGGCGGTTTGTTAAGGACACTGTGGTTTGCCTTTATGTGGTACAGAAGACCTCGAAAGGCATCAACTACATCATCACCATACCAATCTAAAAGTGGCAGCCAATCTGAACCAAATGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.79

Weight (kDa)

9.44

Isoelectric Point (pI)

57.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49510 AT1G49510 AT1G49510
fragaria_vesca	FvH4_2g06990 FvH4_2g07010
malus_domestica	MD00G1050600.v1.1
prunus_persica	Prupe.8G115700_v2.0.a1
pyrus_communis	pycom05g06730
rosa_chinensis	RchiOBHm_Chr6g0259351
rosa_laevigata	RLG00000014537
rosa_multiflora	Rmu_ssc0000050.1_g000059
rosa_roxburghii	Rroxscaffold_7G00206590
rosa_rugosa	Rorug05G0587800 Rorug05G0587900.1 Rorug05G0588000 Rorug05G0588100
rosa_samantha	Rh6AG103800 Rh6BG097000 Rh6CG093200 Rh6DG087000
rosa_wichuraiana	Rw6G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	383
AciI	CCGC	2 cut(s)	57, 417
AcsI	RAATTY	2 cut(s)	175, 245
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	3 cut(s)	132, 185, 455
AfiI	CCNNNNNNNGG	4 cut(s)	99, 144, 383, 450
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	3 cut(s)	232, 314, 361
Alw26I	GTCTC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	2 cut(s)	175, 245
AspS9I	GGNCC	2 cut(s)	67, 365
AsuHPI	GGTGA	2 cut(s)	245, 480
AvaII	GGWCC	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	1 cut(s)	51
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	3 cut(s)	234, 316, 363
BciVI	GTATCC	1 cut(s)	24
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	58
BfuI	GTATCC	1 cut(s)	24
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	1 cut(s)	511
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	512
Bme1390I	CCNGG	3 cut(s)	234, 316, 363
Bme18I	GGWCC	1 cut(s)	365
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	67, 365
BmrFI	CCNGG	3 cut(s)	234, 316, 363
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	3 cut(s)	292, 328, 482
BmuI	ACTGGG	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	466
Bpu1102I	GCTNAGC	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	232, 233, 314
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 144, 383, 450
Bse1I	ACTGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	405
BseBI	CCWGG	3 cut(s)	234, 316, 363
BseDI	CCNNGG	3 cut(s)	232, 233, 314
BseLI	CCNNNNNNNGG	4 cut(s)	99, 144, 383, 450
BseMI	GCAATG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	522
BshFI	GGCC	1 cut(s)	68
BslI	CCNNNNNNNGG	4 cut(s)	99, 144, 383, 450
BsmAI	GTCTC	1 cut(s)	58
BsmBI	CGTCTC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	250
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	57, 417
BspANI	GGCC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	3 cut(s)	232, 233, 314
BssMI	GATC	1 cut(s)	250
Bst2UI	CCWGG	3 cut(s)	234, 316, 363
Bst4CI	ACNGT	3 cut(s)	120, 222, 435
BstDEI	CTNAG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 358
BstNI	CCWGG	3 cut(s)	234, 316, 363
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	3 cut(s)	232, 314, 361
BstV1I	GCAGC	1 cut(s)	522
BstV2I	GAAGAC	1 cut(s)	466
BsuI	GTATCC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	68
BtrI	CACGTC	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	347
BtsIMutI	CAGTG	2 cut(s)	347, 431
Cfr13I	GGNCC	2 cut(s)	67, 365
Csp6I	GTAC	3 cut(s)	131, 184, 454
CviAII	CATG	5 cut(s)	98, 134, 195, 331, 378
CviJI	RGCY	5 cut(s)	68, 110, 157, 298, 513
CviKI_1	RGCY	5 cut(s)	68, 110, 157, 298, 513
CviQI	GTAC	3 cut(s)	131, 184, 454
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	3 cut(s)	232, 314, 361
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	5 cut(s)	101, 137, 198, 334, 381
FaiI	YATR	9 cut(s)	99, 135, 196, 203, 209, 332, 379, 449, 493
FatI	CATG	5 cut(s)	97, 133, 194, 330, 377
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	511
Fsp4HI	GCNGC	1 cut(s)	511
GluI	GCNGC	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	68
Hin1II	CATG	5 cut(s)	101, 137, 198, 334, 381
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	2 cut(s)	245, 480
Hpy166II	GTNNAC	2 cut(s)	105, 368
Hpy188I	TCNGA	4 cut(s)	147, 174, 226, 520
Hpy8I	GTNNAC	2 cut(s)	105, 368
HpyAV	CCTTC	2 cut(s)	80, 168
HpyCH4III	ACNGT	3 cut(s)	120, 222, 435
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 358
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	5 cut(s)	101, 137, 198, 334, 381
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	9 cut(s)	194, 201, 219, 246, 301, 312, 328, 348, 375
Lsp1109I	GCAGC	1 cut(s)	522
LweI	GCATC	3 cut(s)	292, 328, 482
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	334, 471
MluCI	AATT	6 cut(s)	62, 88, 175, 245, 336, 356
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	1 cut(s)	474
MseI	TTAA	3 cut(s)	243, 425, 535
MspR9I	CCNGG	3 cut(s)	234, 316, 363
MvaI	CCWGG	3 cut(s)	234, 316, 363
MwoI	GCNNNNNNNGC	2 cut(s)	65, 358
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	5 cut(s)	101, 137, 198, 334, 381
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	1 cut(s)	137
PasI	CCCWGGG	1 cut(s)	233
PflMI	CCANNNNNTGG	1 cut(s)	383
PkrI	GCNGC	1 cut(s)	512
Psp6I	CCWGG	3 cut(s)	232, 314, 361
PspGI	CCWGG	3 cut(s)	232, 314, 361
PspPI	GGNCC	2 cut(s)	67, 365
RsaI	GTAC	3 cut(s)	132, 185, 455
RsaNI	GTAC	3 cut(s)	131, 184, 454
SaqAI	TTAA	3 cut(s)	243, 425, 535
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	2 cut(s)	67, 365
ScrFI	CCNGG	3 cut(s)	234, 316, 363
SetI	ASST	4 cut(s)	54, 258, 367, 466
SfaNI	GCATC	3 cut(s)	292, 328, 482
SinI	GGWCC	1 cut(s)	365
Sse9I	AATT	6 cut(s)	62, 88, 175, 245, 336, 356
SsiI	CCGC	2 cut(s)	57, 417
StyD4I	CCNGG	3 cut(s)	232, 314, 361
TaaI	ACNGT	3 cut(s)	120, 222, 435
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	38, 466
TasI	AATT	6 cut(s)	62, 88, 175, 245, 336, 356
TatI	WGTACW	2 cut(s)	130, 183
Tru1I	TTAA	3 cut(s)	243, 425, 535
Tru9I	TTAA	3 cut(s)	243, 425, 535
TscAI	CASTG	2 cut(s)	354, 438
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	86, 218
TspRI	CASTG	2 cut(s)	354, 438
Van91I	CCANNNNNTGG	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	2 cut(s)	175, 245
XceI	RCATGY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.