Rorug05G0587800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010427
Physical Location & Seq
Forward (+)
78580059 .. 78585484
5426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0587800.1

Sequence Viewer

Length: 906 bp
ATGTCACATGGTGAGATCTCAGCAAATTGGGAAAGGCGATACATGCATGTCGCCGGAATGAGCTTGGATCTGAACTGGGTCCTTCAATTGATATTCACTCTATTTGTTTTAGGGTTGCTACACTTGGTTAAGAACACAGCGTCAAAGTACTTTGAGGTCAACGCAAATTTCGAAAGAGGAGGCGGAGGAGACCACAGTGGTGATTGGACGACCCAAATGATGATCCATTTGAGCTACGTCTACGAGCAAGGTTTCGTCACAAATCTACAATCTCGATGCGAATCTCTGCCTTCTTCATCTCTATCAGGTGATTTAGGAACGTGTGATCACTCAAATTGTTACACTGATATTGGAAAGCTTCTGAAGATAAAGCTAGATGAGGTTTCAGCTAGGACCATGGAGAGACAAAAGTTTAAGCCAAGTGAGTTGAAGATCCTGGACTGTGAAGATGAGGTGCCAACTCAAGCTAGCAGAGCTCCAACTGAAGCTACTGATAAAGGCAAGAATAAAGTTGAGTTTGAACCTGCTTTTTCTGATGATGACTCATGTGATGATGATTACAATCCTGCTATGGAAGATGATGAATATGCTGCTTACGGGGTGGATGATGATTTCTTGTTTGACTGGTTGACAGAAGAGGAAGGAGGAGCTGCTCAAGTGGCTAAGGGAGCCAAACAGCCCCCAAAGACAAAGAATGAGCTCAGAGAAAAGGCAAAGCTTAGAGCAGCAAAGCTGAAGAAAAAAAGGGAGGAAAAGAAGGCAGGAGCAAATGCATCAGGTGCTAGAGCTGCAACCAGCAACAGTAAAGCTGCTGCTGGAACCAGCAAGGTTAAAGCAGCTGCTTCTGCAACTGGATCAACAAGGTCATCTGTCAGAATCAGACAAAATGCAAAGGCTAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

33.14

Weight (kDa)

6.35

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010427)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49510 AT1G49510 AT1G49510
fragaria_vesca FvH4_2g06990 FvH4_2g07010
malus_domestica MD00G1050600.v1.1
prunus_persica Prupe.8G115700_v2.0.a1
pyrus_communis pycom05g06730
rosa_chinensis RchiOBHm_Chr6g0259351
rosa_laevigata RLG00000014537
rosa_multiflora Rmu_ssc0000050.1_g000059
rosa_roxburghii Rroxscaffold_7G00206590
rosa_rugosa Rorug05G0587800 Rorug05G0587900.1 Rorug05G0588000 Rorug05G0588100
rosa_samantha Rh6AG103800 Rh6BG097000 Rh6CG093200 Rh6DG087000
rosa_wichuraiana Rw6G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 532
AccB1I GGYRCC 1 cut(s) 454
AccI GTMKAC 1 cut(s) 240
AciI CCGC 1 cut(s) 183
AclWI GGATC 4 cut(s) 75, 217, 427, 862
AcsI RAATTY 1 cut(s) 166
AcuI CTGAAG 3 cut(s) 383, 504, 755
AdeI CACNNNGTG 1 cut(s) 11
AfaI GTAC 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 320
AgsI TTSAA 3 cut(s) 86, 430, 521
AjnI CCWGG 1 cut(s) 435
AleI CACNNNNGTG 1 cut(s) 198
Alw21I GWGCWC 2 cut(s) 478, 702
Alw26I GTCTC 2 cut(s) 183, 397
AlwI GGATC 4 cut(s) 75, 217, 427, 862
ApeKI GCWGC 8 cut(s) 590, 650, 725, 788, 809, 812, 836, 839
ApoI RAATTY 1 cut(s) 166
AspS9I GGNCC 2 cut(s) 79, 393
AsuHPI GGTGA 3 cut(s) 23, 212, 320
AsuII TTCGAA 1 cut(s) 171
AsuNHI GCTAGC 1 cut(s) 467
AvaII GGWCC 2 cut(s) 79, 393
BanI GGYRCC 1 cut(s) 454
BanII GRGCYC 2 cut(s) 478, 702
Bbv12I GWGCWC 2 cut(s) 478, 702
BbvI GCAGC 8 cut(s) 577, 637, 737, 775, 796, 799, 826, 848
BciT130I CCWGG 1 cut(s) 437
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 183, 397
BfaI CTAG 5 cut(s) 374, 390, 468, 783, 897
BfuAI ACCTGC 1 cut(s) 532
BglII AGATCT 1 cut(s) 15
BisI GCNGC 8 cut(s) 591, 651, 726, 789, 810, 813, 837, 840
BlsI GCNGC 8 cut(s) 592, 652, 727, 790, 811, 814, 838, 841
BmcAI AGTACT 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 437
Bme18I GGWCC 2 cut(s) 79, 393
BmgT120I GGNCC 2 cut(s) 79, 393
BmiI GGNNCC 4 cut(s) 80, 456, 670, 820
BmrFI CCNGG 1 cut(s) 437
BmrI ACTGGG 1 cut(s) 85
BmsI GCATC 2 cut(s) 266, 782
BmtI GCTAGC 1 cut(s) 471
BmuI ACTGGG 1 cut(s) 85
Bpu10I CCTNAGC 1 cut(s) 663
Bpu14I TTCGAA 1 cut(s) 171
BpuEI CTTGAG 2 cut(s) 447, 639
BsaBI GATNNNNATC 2 cut(s) 280, 561
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 396
Bse1I ACTGG 3 cut(s) 80, 629, 856
Bse8I GATNNNNATC 2 cut(s) 280, 561
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 1 cut(s) 610
BseJI GATNNNNATC 2 cut(s) 280, 561
BseMII CTCAG 2 cut(s) 33, 715
BseNI ACTGG 3 cut(s) 80, 629, 856
BseRI GAGGAG 3 cut(s) 192, 201, 660
BseXI GCAGC 8 cut(s) 577, 637, 737, 775, 796, 799, 826, 848
BshNI GGYRCC 1 cut(s) 454
BsiHKAI GWGCWC 2 cut(s) 478, 702
BsiSI CCGG 1 cut(s) 54
BsmAI GTCTC 2 cut(s) 183, 397
Bso31I GGTCTC 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 478, 702
Bsp143I GATC 6 cut(s) 15, 67, 222, 325, 432, 854
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 32, 714
BspLI GGNNCC 4 cut(s) 80, 456, 670, 820
BspMI ACCTGC 1 cut(s) 532
BspOI GCTAGC 1 cut(s) 471
BspPI GGATC 4 cut(s) 75, 217, 427, 862
BspT104I TTCGAA 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 454
BspTNI GGTCTC 1 cut(s) 183
BsrI ACTGG 3 cut(s) 80, 629, 856
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 6 cut(s) 15, 67, 222, 325, 432, 854
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 3 cut(s) 197, 443, 803
Bst6I CTCTTC 1 cut(s) 630
BstAPI GCANNNNNTGC 1 cut(s) 779
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 4 cut(s) 19, 663, 701, 719
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 610
BstKTI GATC 6 cut(s) 18, 70, 225, 328, 435, 857
BstMAI GTCTC 2 cut(s) 183, 397
BstMBI GATC 6 cut(s) 15, 67, 222, 325, 432, 854
BstMWI GCNNNNNNNGC 7 cut(s) 43, 473, 659, 668, 779, 788, 845
BstNI CCWGG 1 cut(s) 437
BstNSI RCATGY 2 cut(s) 46, 50
BstSCI CCNGG 1 cut(s) 435
BstV1I GCAGC 8 cut(s) 577, 637, 737, 775, 796, 799, 826, 848
BstX2I RGATCY 3 cut(s) 15, 67, 432
BstYI RGATCY 3 cut(s) 15, 67, 432
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 1 cut(s) 610
BtsIMutI CAGTG 2 cut(s) 202, 342
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 1 cut(s) 469
Cfr13I GGNCC 2 cut(s) 79, 393
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 148
CviAII CATG 5 cut(s) 8, 43, 47, 397, 546
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 4 cut(s) 19, 663, 701, 719
DpnI GATC 6 cut(s) 17, 69, 224, 327, 434, 856
DpnII GATC 6 cut(s) 15, 67, 222, 325, 432, 854
DraIII CACNNNGTG 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
EciI GGCGGA 1 cut(s) 198
Ecl136II GAGCTC 2 cut(s) 476, 700
Eco130I CCWWGG 1 cut(s) 396
Eco24I GRGCYC 2 cut(s) 478, 702
Eco31I GGTCTC 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 79, 393
Eco53kI GAGCTC 2 cut(s) 476, 700
Eco57I CTGAAG 3 cut(s) 383, 504, 755
EcoICRI GAGCTC 2 cut(s) 476, 700
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 396
EcoT22I ATGCAT 2 cut(s) 48, 775
EcoT38I GRGCYC 2 cut(s) 478, 702
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 5 cut(s) 11, 46, 50, 400, 549
FaiI YATR 7 cut(s) 9, 44, 48, 398, 547, 572, 588
FatI CATG 5 cut(s) 7, 42, 46, 396, 545
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 8 cut(s) 591, 651, 726, 789, 810, 813, 837, 840
FokI GGATG 1 cut(s) 617
FriOI GRGCYC 2 cut(s) 478, 702
Fsp4HI GCNGC 8 cut(s) 591, 651, 726, 789, 810, 813, 837, 840
FspBI CTAG 5 cut(s) 374, 390, 468, 783, 897
GluI GCNGC 8 cut(s) 591, 651, 726, 789, 810, 813, 837, 840
HapII CCGG 1 cut(s) 54
HgaI GACGC 1 cut(s) 129
Hin1II CATG 5 cut(s) 11, 46, 50, 400, 549
HincII GTYRAC 2 cut(s) 160, 630
HindII GTYRAC 2 cut(s) 160, 630
HindIII AAGCTT 2 cut(s) 356, 716
HinfI GANTC 3 cut(s) 281, 542, 876
HpaII CCGG 1 cut(s) 54
HphI GGTGA 3 cut(s) 23, 212, 320
Hpy166II GTNNAC 3 cut(s) 160, 241, 630
Hpy188I TCNGA 6 cut(s) 72, 363, 535, 704, 875, 881
Hpy188III TCNNGA 1 cut(s) 273
Hpy8I GTNNAC 3 cut(s) 160, 241, 630
HpyAV CCTTC 4 cut(s) 92, 300, 635, 751
HpyCH4III ACNGT 3 cut(s) 197, 443, 803
HpyCH4IV ACGT 2 cut(s) 237, 320
HpyCH4V TGCA 5 cut(s) 46, 773, 791, 848, 890
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 473, 659, 668, 779, 788, 845
HpyF3I CTNAG 4 cut(s) 19, 663, 701, 719
HpySE526I ACGT 2 cut(s) 237, 320
Hsp92II CATG 5 cut(s) 11, 46, 50, 400, 549
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 6 cut(s) 15, 67, 222, 325, 432, 854
LmnI GCTCC 4 cut(s) 481, 647, 668, 764
Lsp1109I GCAGC 8 cut(s) 577, 637, 737, 775, 796, 799, 826, 848
LweI GCATC 2 cut(s) 266, 782
MaeI CTAG 5 cut(s) 374, 390, 468, 783, 897
MaeII ACGT 2 cut(s) 237, 320
MaeIII GTNAC 3 cut(s) 3, 256, 338
MalI GATC 6 cut(s) 17, 69, 224, 327, 434, 856
MboI GATC 6 cut(s) 15, 67, 222, 325, 432, 854
MboII GAAGA 7 cut(s) 285, 376, 442, 458, 587, 647, 748
MfeI CAATTG 1 cut(s) 86
MflI RGATCY 3 cut(s) 15, 67, 432
MhlI GDGCHC 2 cut(s) 478, 702
MluCI AATT 4 cut(s) 25, 86, 166, 334
MlyI GAGTC 1 cut(s) 536
MmeI TCCRAC 1 cut(s) 503
MnlI CCTC 9 cut(s) 148, 170, 173, 179, 373, 445, 631, 638, 742
Mph1103I ATGCAT 2 cut(s) 48, 775
MseI TTAA 3 cut(s) 129, 414, 831
MslI CAYNNNNRTG 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 839
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 437
MunI CAATTG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 437
MwoI GCNNNNNNNGC 7 cut(s) 43, 473, 659, 668, 779, 788, 845
NcoI CCATGG 1 cut(s) 396
NdeII GATC 6 cut(s) 15, 67, 222, 325, 432, 854
NheI GCTAGC 1 cut(s) 467
NlaIII CATG 5 cut(s) 11, 46, 50, 400, 549
NlaIV GGNNCC 4 cut(s) 80, 456, 670, 820
NmuCI GTSAC 2 cut(s) 3, 256
NsiI ATGCAT 2 cut(s) 48, 775
NspI RCATGY 2 cut(s) 46, 50
NspV TTCGAA 1 cut(s) 171
OliI CACNNNNGTG 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 2 cut(s) 281, 876
PfoI TCCNGGA 1 cut(s) 435
PkrI GCNGC 8 cut(s) 592, 652, 727, 790, 811, 814, 838, 841
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
PpuMI RGGWCCY 1 cut(s) 79
Psp124BI GAGCTC 2 cut(s) 478, 702
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 435
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 4 cut(s) 80, 456, 670, 820
PspPI GGNCC 2 cut(s) 79, 393
PspPPI RGGWCCY 1 cut(s) 79
PsuI RGATCY 3 cut(s) 15, 67, 432
PvuII CAGCTG 1 cut(s) 839
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 2 cut(s) 478, 702
SaqAI TTAA 3 cut(s) 129, 414, 831
SatI GCNGC 8 cut(s) 591, 651, 726, 789, 810, 813, 837, 840
Sau3AI GATC 6 cut(s) 15, 67, 222, 325, 432, 854
Sau96I GGNCC 2 cut(s) 79, 393
ScaI AGTACT 1 cut(s) 149
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 1 cut(s) 437
SduI GDGCHC 2 cut(s) 478, 702
SfaNI GCATC 2 cut(s) 266, 782
SfuI TTCGAA 1 cut(s) 171
SinI GGWCC 2 cut(s) 79, 393
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 2 cut(s) 462, 654
SmoI CTYRAG 2 cut(s) 462, 654
Sse9I AATT 4 cut(s) 25, 86, 166, 334
SsiI CCGC 1 cut(s) 183
SspMI CTAG 5 cut(s) 374, 390, 468, 783, 897
SstI GAGCTC 2 cut(s) 478, 702
StyD4I CCNGG 1 cut(s) 435
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 3 cut(s) 197, 443, 803
TaiI ACGT 2 cut(s) 240, 323
TaqI TCGA 2 cut(s) 171, 274
TasI AATT 4 cut(s) 25, 86, 166, 334
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 2 cut(s) 281, 876
Tru1I TTAA 3 cut(s) 129, 414, 831
Tru9I TTAA 3 cut(s) 129, 414, 831
TscAI CASTG 2 cut(s) 202, 349
TseFI GTSAC 2 cut(s) 3, 256
TseI GCWGC 8 cut(s) 590, 650, 725, 788, 809, 812, 836, 839
Tsp45I GTSAC 2 cut(s) 3, 256
TspDTI ATGAA 2 cut(s) 285, 597
TspRI CASTG 2 cut(s) 202, 349
VpaK11BI GGWCC 2 cut(s) 79, 393
XapI RAATTY 1 cut(s) 166
XceI RCATGY 2 cut(s) 46, 50
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 5 cut(s) 374, 390, 468, 783, 897
ZrmI AGTACT 1 cut(s) 149
Zsp2I ATGCAT 2 cut(s) 48, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.