Rw6G008960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010427
Physical Location & Seq
Reverse (-)
15064685 .. 15066857
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008960.1

Sequence Viewer

Length: 789 bp
ATGACGACTCTCTATCCTTGTCACTTGTTCTCTGCTTCCGCCCACCTCCAGGCCTCCGCCAAATTCGCCGCCCTCAACAATAAGCCTCCCAATTCCACTCATGGCTTCAAGAAGGGTTTGGCACAGTTTAGTGAAGTACATGCCTTTGGTCTGAGTGTTAAGCCTTCTCGTTTGCTTCAGAATTCCCGGTACAATATCTCATGTGCTGTGAACATGACTGCTGGACAGTCGGATGACCCTGGGCAGATAAAATTTGATCACCTAATCACTAAAGCAAGAAAGTTATGGGAAAGTTCTCCACAGCCAGTCAAGATGTTCCCTTGGAAAAGAGCAGGGCTCAACTTTATTCAACTCATCCTTGACCTTGTACTAGCAGTTGCTAAATACTTATGTGTACCTCTGCTAGTAGTTTCATCTCTTAGTGAGATGTCCTACTGTGCACAGGAAAGGAAGTTGTTTTTCGTTCCTGTACCTGTCATCATTGGAATGGCTATTGCTGAAGTTTTAAAACTGGCAGCTTGGATCTTGTTTGTTTGTTTTTCTTATTGTCAGGATGCAGAAATTCCCTGGCATCTGTTTGTCATGGCAATTTTCTTCACACTGCTCAAATTGCCAGGTCCATATTACCCATTCTGGGGCCGAATAATAATCCCACACATTGCCAATGGGGGTTTGGTAAGGACATTGTGGTTTGCATTTCTGTGGTACAGAAGACCTCGGAAGGCATCAACAACAGCATCATCACACCATTCTGACAGTGGCAGTCAATCTGAACCAAATGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

29.43

Weight (kDa)

9.49

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010427)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49510 AT1G49510 AT1G49510
fragaria_vesca FvH4_2g06990 FvH4_2g07010
malus_domestica MD00G1050600.v1.1
prunus_persica Prupe.8G115700_v2.0.a1
pyrus_communis pycom05g06730
rosa_chinensis RchiOBHm_Chr6g0259351
rosa_laevigata RLG00000014537
rosa_multiflora Rmu_ssc0000050.1_g000059
rosa_roxburghii Rroxscaffold_7G00206590
rosa_rugosa Rorug05G0587800 Rorug05G0587900.1 Rorug05G0588000 Rorug05G0588100
rosa_samantha Rh6AG103800 Rh6BG097000 Rh6CG093200 Rh6DG087000
rosa_wichuraiana Rw6G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 39, 57, 69
AclWI GGATC 1 cut(s) 530
AcsI RAATTY 4 cut(s) 62, 181, 251, 561
AcuI CTGAAG 2 cut(s) 161, 519
AfaI GTAC 6 cut(s) 138, 191, 369, 396, 471, 707
AfiI CCNNNNNNNGG 3 cut(s) 49, 634, 635
AgsI TTSAA 2 cut(s) 109, 350
AjnI CCWGG 4 cut(s) 48, 238, 566, 613
AluBI AGCT 1 cut(s) 518
AluI AGCT 1 cut(s) 518
Alw21I GWGCWC 1 cut(s) 442
Alw44I GTGCAC 1 cut(s) 438
AlwI GGATC 1 cut(s) 530
AoxI GGCC 2 cut(s) 51, 637
ApaLI GTGCAC 1 cut(s) 438
ApeKI GCWGC 1 cut(s) 515
ApoI RAATTY 4 cut(s) 62, 181, 251, 561
AspS9I GGNCC 2 cut(s) 617, 637
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 442
BanII GRGCYC 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 718
Bbv12I GWGCWC 1 cut(s) 442
BbvI GCAGC 1 cut(s) 527
BciT130I CCWGG 4 cut(s) 50, 240, 568, 615
BclI TGATCA 1 cut(s) 256
BcnI CCSGG 1 cut(s) 187
BfaI CTAG 2 cut(s) 371, 404
BisI GCNGC 2 cut(s) 69, 516
BlsI GCNGC 2 cut(s) 70, 517
Bme1390I CCNGG 5 cut(s) 50, 187, 240, 568, 615
Bme18I GGWCC 1 cut(s) 617
BmgT120I GGNCC 2 cut(s) 617, 637
BmiI GGNNCC 1 cut(s) 638
BmrFI CCNGG 5 cut(s) 50, 187, 240, 568, 615
BmsI GCATC 4 cut(s) 544, 580, 734, 746
BpiI GAAGAC 1 cut(s) 718
BplI GAGNNNNNCTC 2 cut(s) 321, 353
BpmI CTGGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 187
BsaJI CCNNGG 5 cut(s) 238, 239, 320, 566, 716
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 634, 635
Bse1I ACTGG 2 cut(s) 305, 516
Bse3DI GCAATG 1 cut(s) 657
BseBI CCWGG 4 cut(s) 50, 240, 568, 615
BseDI CCNNGG 5 cut(s) 238, 239, 320, 566, 716
BseGI GGATG 3 cut(s) 238, 354, 559
BseLI CCNNNNNNNGG 3 cut(s) 49, 634, 635
BseMI GCAATG 1 cut(s) 657
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 305, 516
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 1 cut(s) 527
BshFI GGCC 2 cut(s) 53, 639
BsiHKAI GWGCWC 1 cut(s) 442
BsiSI CCGG 1 cut(s) 187
BslI CCNNNNNNNGG 3 cut(s) 49, 634, 635
BsnI GGCC 2 cut(s) 53, 639
Bsp1286I GDGCHC 2 cut(s) 339, 442
Bsp143I GATC 2 cut(s) 256, 522
BspACI CCGC 3 cut(s) 39, 57, 69
BspANI GGCC 2 cut(s) 53, 639
BspCNI CTCAG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 638
BspPI GGATC 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 657
BsrI ACTGG 2 cut(s) 305, 516
BssECI CCNNGG 5 cut(s) 238, 239, 320, 566, 716
BssMI GATC 2 cut(s) 256, 522
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 4 cut(s) 50, 240, 568, 615
Bst4CI ACNGT 4 cut(s) 126, 228, 437, 758
BstDEI CTNAG 2 cut(s) 152, 419
BstF5I GGATG 3 cut(s) 238, 354, 559
BstKTI GATC 2 cut(s) 259, 525
BstMBI GATC 2 cut(s) 256, 522
BstMWI GCNNNNNNNGC 2 cut(s) 65, 610
BstNI CCWGG 4 cut(s) 50, 240, 568, 615
BstNSI RCATGY 1 cut(s) 143
BstSCI CCNGG 5 cut(s) 48, 185, 238, 566, 613
BstSLI GKGCMC 1 cut(s) 442
BstV1I GCAGC 1 cut(s) 527
BstV2I GAAGAC 1 cut(s) 718
BstX2I RGATCY 1 cut(s) 522
BstYI RGATCY 1 cut(s) 522
BsuRI GGCC 2 cut(s) 53, 639
BtsCI GGATG 3 cut(s) 238, 354, 559
BtsI GCAGTG 1 cut(s) 599
BtsIMutI CAGTG 2 cut(s) 599, 763
Cfr13I GGNCC 2 cut(s) 617, 637
Csp6I GTAC 6 cut(s) 137, 190, 368, 395, 470, 706
CviAII CATG 5 cut(s) 101, 140, 201, 214, 583
CviJI RGCY 9 cut(s) 53, 85, 105, 163, 304, 337, 491, 518, 639
CviKI_1 RGCY 9 cut(s) 53, 85, 105, 163, 304, 337, 491, 518, 639
CviQI GTAC 6 cut(s) 137, 190, 368, 395, 470, 706
DdeI CTNAG 2 cut(s) 152, 419
DpnI GATC 2 cut(s) 258, 524
DpnII GATC 2 cut(s) 256, 522
DraI TTTAAA 1 cut(s) 507
EciI GGCGGA 2 cut(s) 28, 46
Eco130I CCWWGG 1 cut(s) 320
Eco147I AGGCCT 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 617
Eco57I CTGAAG 2 cut(s) 161, 519
EcoRI GAATTC 1 cut(s) 181
EcoRII CCWGG 4 cut(s) 48, 238, 566, 613
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 5 cut(s) 104, 143, 204, 217, 586
FaiI YATR 8 cut(s) 102, 141, 202, 215, 286, 391, 584, 622
FatI CATG 5 cut(s) 100, 139, 200, 213, 582
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 69, 516
FokI GGATG 3 cut(s) 245, 341, 566
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 2 cut(s) 69, 516
FspBI CTAG 2 cut(s) 371, 404
GluI GCNGC 2 cut(s) 69, 516
GsuI CTGGAG 1 cut(s) 32
HaeIII GGCC 2 cut(s) 53, 639
HapII CCGG 1 cut(s) 187
Hin1II CATG 5 cut(s) 104, 143, 204, 217, 586
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 3 cut(s) 211, 395, 440
Hpy188I TCNGA 6 cut(s) 153, 180, 232, 720, 754, 772
Hpy188III TCNNGA 3 cut(s) 109, 310, 551
Hpy8I GTNNAC 3 cut(s) 211, 395, 440
HpyAV CCTTC 3 cut(s) 106, 174, 715
HpyCH4III ACNGT 4 cut(s) 126, 228, 437, 758
HpyCH4V TGCA 3 cut(s) 440, 557, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 610
HpyF3I CTNAG 2 cut(s) 152, 419
Hsp92II CATG 5 cut(s) 104, 143, 204, 217, 586
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 2 cut(s) 256, 522
Lsp1109I GCAGC 1 cut(s) 527
LweI GCATC 4 cut(s) 544, 580, 734, 746
MaeI CTAG 2 cut(s) 371, 404
MaeIII GTNAC 1 cut(s) 20
MalI GATC 2 cut(s) 258, 524
MboI GATC 2 cut(s) 256, 522
MboII GAAGA 2 cut(s) 586, 723
MflI RGATCY 1 cut(s) 522
MhlI GDGCHC 2 cut(s) 339, 442
MluCI AATT 7 cut(s) 62, 91, 181, 251, 561, 588, 608
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 6 cut(s) 56, 64, 83, 96, 408, 726
MseI TTAA 2 cut(s) 159, 506
MslI CAYNNNNRTG 2 cut(s) 485, 700
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 5 cut(s) 50, 187, 240, 568, 615
MvaI CCWGG 4 cut(s) 50, 240, 568, 615
MwoI GCNNNNNNNGC 2 cut(s) 65, 610
NciI CCSGG 1 cut(s) 187
NdeII GATC 2 cut(s) 256, 522
NlaIII CATG 5 cut(s) 104, 143, 204, 217, 586
NlaIV GGNNCC 1 cut(s) 638
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 143
PasI CCCWGGG 1 cut(s) 239
PceI AGGCCT 1 cut(s) 53
PkrI GCNGC 2 cut(s) 70, 517
Psp6I CCWGG 4 cut(s) 48, 238, 566, 613
PspGI CCWGG 4 cut(s) 48, 238, 566, 613
PspN4I GGNNCC 1 cut(s) 638
PspPI GGNCC 2 cut(s) 617, 637
PsuI RGATCY 1 cut(s) 522
RsaI GTAC 6 cut(s) 138, 191, 369, 396, 471, 707
RsaNI GTAC 6 cut(s) 137, 190, 368, 395, 470, 706
RseI CAYNNNNRTG 2 cut(s) 485, 700
SaqAI TTAA 2 cut(s) 159, 506
SatI GCNGC 2 cut(s) 69, 516
Sau3AI GATC 2 cut(s) 256, 522
Sau96I GGNCC 2 cut(s) 617, 637
ScrFI CCNGG 5 cut(s) 50, 187, 240, 568, 615
SduI GDGCHC 2 cut(s) 339, 442
SetI ASST 8 cut(s) 48, 264, 366, 400, 475, 520, 619, 718
SfaNI GCATC 4 cut(s) 544, 580, 734, 746
SinI GGWCC 1 cut(s) 617
SmiMI CAYNNNNRTG 2 cut(s) 485, 700
Sse9I AATT 7 cut(s) 62, 91, 181, 251, 561, 588, 608
SseBI AGGCCT 1 cut(s) 53
SsiI CCGC 3 cut(s) 39, 57, 69
SspMI CTAG 2 cut(s) 371, 404
StuI AGGCCT 1 cut(s) 53
StyD4I CCNGG 5 cut(s) 48, 185, 238, 566, 613
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 4 cut(s) 126, 228, 437, 758
TasI AATT 7 cut(s) 62, 91, 181, 251, 561, 588, 608
TatI WGTACW 2 cut(s) 136, 367
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 159, 506
Tru9I TTAA 2 cut(s) 159, 506
TscAI CASTG 2 cut(s) 606, 763
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 402
TspRI CASTG 2 cut(s) 606, 763
VneI GTGCAC 1 cut(s) 438
VpaK11BI GGWCC 1 cut(s) 617
XapI RAATTY 4 cut(s) 62, 181, 251, 561
XceI RCATGY 1 cut(s) 143
XcmI CCANNNNNNNNNTGG 2 cut(s) 670, 755
XspI CTAG 2 cut(s) 371, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.