Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010427

Physical Location & Seq

Genomic Coordinates Forward (+)

54481189 .. 54483755

Gene Structure 2567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014537

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGACGACTCTCTATCCTTGTCACTTGTTCTCTGTTTCCGCCCACCTTCAGGCCTCCGCCAAATTCGCCGCCCTTAACAATAAACCTCCCAATTCCACTCACGGCTTCAAGAAGGGTTTGGCACAGTGTAGTGAAGTACATGCCTTTGGTTTGAGTGTTAAGCCTTCTCGTTTGCTTCAGAATTCCCGGTACAATATCTCATGTGCTGTGAACATGACCGCTGGACAGTCGGATGACCCTGGGCAGATAAAATTTGATCACCTAATCGCTAAAGCAAGAAAGTTATGGGAAAGTTCTCCACAGCCAGTCAAGATGTTCCCTTGGAAAAGAGCAGGGCTTAACTTTATTCAACTCATTCTTGACCTTGTACTAGCAGTTGCTAAATACTTATGTGTACCTCTGCTAGTAGTTTCATCTCTTAGTGAGATGTCCTACTGTGCACAGGAAAGGAAGTTGTTTTTCGTTCCTGTACCTGTCATCATTGGAATGGCTATTGCTGAAGTTTTAAAACTGGCAGCGTTGGACGTTTCTCCACTTCTGAAGGATGCTGAAGTTCCCTGGCATCTGTTTGTCATGGCAATTTTCTTCACACTGCTCAAATTGCCAGAAGACCTCGAAAGGCATCAACAACAGCATCATCACACCATTCAGAAAGTGGCAGTCAATCTGAACCAAATGAACTCTAATTGTTTAGAGCAAGGCCACACTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

26.49

Weight (kDa)

9.15

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49510 AT1G49510 AT1G49510
fragaria_vesca	FvH4_2g06990 FvH4_2g07010
malus_domestica	MD00G1050600.v1.1
prunus_persica	Prupe.8G115700_v2.0.a1
pyrus_communis	pycom05g06730
rosa_chinensis	RchiOBHm_Chr6g0259351
rosa_laevigata	RLG00000014537
rosa_multiflora	Rmu_ssc0000050.1_g000059
rosa_roxburghii	Rroxscaffold_7G00206590
rosa_rugosa	Rorug05G0587800 Rorug05G0587900.1 Rorug05G0588000 Rorug05G0588100
rosa_samantha	Rh6AG103800 Rh6BG097000 Rh6CG093200 Rh6DG087000
rosa_wichuraiana	Rw6G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	39, 57, 69, 219
AcsI	RAATTY	3 cut(s)	62, 181, 251
AcuI	CTGAAG	5 cut(s)	32, 161, 519, 560, 570
AdeI	CACNNNGTG	1 cut(s)	711
AfaI	GTAC	5 cut(s)	138, 191, 369, 396, 471
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	109, 350
AjnI	CCWGG	2 cut(s)	238, 557
Alw21I	GWGCWC	1 cut(s)	442
Alw44I	GTGCAC	1 cut(s)	438
AoxI	GGCC	2 cut(s)	51, 700
ApaLI	GTGCAC	1 cut(s)	438
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	3 cut(s)	62, 181, 251
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	527
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	2 cut(s)	240, 559
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	187
BfaI	CTAG	3 cut(s)	371, 404, 708
BisI	GCNGC	2 cut(s)	69, 516
BlsI	GCNGC	2 cut(s)	70, 517
Bme1390I	CCNGG	3 cut(s)	187, 240, 559
BmrFI	CCNGG	3 cut(s)	187, 240, 559
BmsI	GCATC	4 cut(s)	535, 571, 631, 643
BpiI	GAAGAC	1 cut(s)	615
BpuMI	CCSGG	1 cut(s)	187
BsaJI	CCNNGG	4 cut(s)	238, 239, 320, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	305, 516
BseBI	CCWGG	2 cut(s)	240, 559
BseDI	CCNNGG	4 cut(s)	238, 239, 320, 557
BseGI	GGATG	2 cut(s)	238, 550
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseNI	ACTGG	2 cut(s)	305, 516
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	527
BshFI	GGCC	2 cut(s)	53, 702
BsiHKAI	GWGCWC	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	49
BsnI	GGCC	2 cut(s)	53, 702
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	4 cut(s)	39, 57, 69, 219
BspANI	GGCC	2 cut(s)	53, 702
BsrI	ACTGG	2 cut(s)	305, 516
BssECI	CCNNGG	4 cut(s)	238, 239, 320, 557
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	2 cut(s)	240, 559
Bst4CI	ACNGT	3 cut(s)	126, 228, 437
BstDEI	CTNAG	1 cut(s)	419
BstF5I	GGATG	2 cut(s)	238, 550
BstKTI	GATC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 601
BstNI	CCWGG	2 cut(s)	240, 559
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	3 cut(s)	185, 238, 557
BstSLI	GKGCMC	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	527
BstV2I	GAAGAC	1 cut(s)	615
BsuRI	GGCC	2 cut(s)	53, 702
BtsCI	GGATG	2 cut(s)	238, 550
BtsI	GCAGTG	1 cut(s)	590
BtsIMutI	CAGTG	2 cut(s)	131, 590
Csp6I	GTAC	5 cut(s)	137, 190, 368, 395, 470
CviAII	CATG	4 cut(s)	140, 201, 214, 574
CviJI	RGCY	7 cut(s)	53, 105, 163, 304, 337, 491, 702
CviKI_1	RGCY	7 cut(s)	53, 105, 163, 304, 337, 491, 702
CviQI	GTAC	5 cut(s)	137, 190, 368, 395, 470
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
DraI	TTTAAA	1 cut(s)	507
DraIII	CACNNNGTG	1 cut(s)	711
EciI	GGCGGA	2 cut(s)	28, 46
Eco130I	CCWWGG	1 cut(s)	320
Eco147I	AGGCCT	1 cut(s)	53
Eco57I	CTGAAG	5 cut(s)	32, 161, 519, 560, 570
EcoRI	GAATTC	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	238, 557
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	4 cut(s)	143, 204, 217, 577
FaiI	YATR	6 cut(s)	141, 202, 215, 286, 391, 575
FatI	CATG	4 cut(s)	139, 200, 213, 573
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	69, 516
FokI	GGATG	2 cut(s)	245, 557
Fsp4HI	GCNGC	2 cut(s)	69, 516
FspBI	CTAG	3 cut(s)	371, 404, 708
GluI	GCNGC	2 cut(s)	69, 516
HaeIII	GGCC	2 cut(s)	53, 702
HapII	CCGG	1 cut(s)	187
Hin1II	CATG	4 cut(s)	143, 204, 217, 577
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	3 cut(s)	211, 395, 440
Hpy188I	TCNGA	5 cut(s)	180, 232, 540, 651, 669
Hpy188III	TCNNGA	3 cut(s)	109, 310, 359
Hpy8I	GTNNAC	3 cut(s)	211, 395, 440
HpyAV	CCTTC	4 cut(s)	56, 106, 174, 535
HpyCH4III	ACNGT	3 cut(s)	126, 228, 437
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 601
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	4 cut(s)	143, 204, 217, 577
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	256
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	4 cut(s)	535, 571, 631, 643
MaeI	CTAG	3 cut(s)	371, 404, 708
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	2 cut(s)	577, 620
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	7 cut(s)	62, 91, 181, 251, 579, 599, 685
MmeI	TCCRAC	2 cut(s)	210, 501
MnlI	CCTC	4 cut(s)	64, 96, 408, 623
MseI	TTAA	4 cut(s)	75, 159, 339, 506
MslI	CAYNNNNRTG	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	3 cut(s)	187, 240, 559
MvaI	CCWGG	2 cut(s)	240, 559
MwoI	GCNNNNNNNGC	2 cut(s)	65, 601
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	4 cut(s)	143, 204, 217, 577
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	1 cut(s)	143
PasI	CCCWGGG	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	70, 517
Psp6I	CCWGG	2 cut(s)	238, 557
PspGI	CCWGG	2 cut(s)	238, 557
RsaI	GTAC	5 cut(s)	138, 191, 369, 396, 471
RsaNI	GTAC	5 cut(s)	137, 190, 368, 395, 470
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	4 cut(s)	75, 159, 339, 506
SatI	GCNGC	2 cut(s)	69, 516
Sau3AI	GATC	1 cut(s)	256
ScrFI	CCNGG	3 cut(s)	187, 240, 559
SduI	GDGCHC	1 cut(s)	442
SetI	ASST	9 cut(s)	48, 88, 264, 366, 400, 475, 528, 615, 713
SfaNI	GCATC	4 cut(s)	535, 571, 631, 643
SmiMI	CAYNNNNRTG	1 cut(s)	485
Sse9I	AATT	7 cut(s)	62, 91, 181, 251, 579, 599, 685
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	4 cut(s)	39, 57, 69, 219
SspMI	CTAG	3 cut(s)	371, 404, 708
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	3 cut(s)	185, 238, 557
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	3 cut(s)	126, 228, 437
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	1 cut(s)	615
TasI	AATT	7 cut(s)	62, 91, 181, 251, 579, 599, 685
TatI	WGTACW	2 cut(s)	136, 367
TauI	GCSGC	1 cut(s)	71
Tru1I	TTAA	4 cut(s)	75, 159, 339, 506
Tru9I	TTAA	4 cut(s)	75, 159, 339, 506
TscAI	CASTG	2 cut(s)	131, 597
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	402, 692
TspRI	CASTG	2 cut(s)	131, 597
VneI	GTGCAC	1 cut(s)	438
XapI	RAATTY	3 cut(s)	62, 181, 251
XceI	RCATGY	1 cut(s)	143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	652
XspI	CTAG	3 cut(s)	371, 404, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.