Prupe.8G115700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0010427
Physical Location & Seq
Forward (+)
14296917 .. 14299710
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G115700.1

Sequence Viewer

Length: 780 bp
ATGGCAACTCTTTATCCTTCTCACTTGTTATCTGCCTCCCCCAACCTCCAAGCCTCCGCTAAAATCAACCTTCGGGCTCATGCTCCTCCTTCTGTTCTTGGGCCCAAGGGTTTGGCACAGTGTAGTAAACTGCATGCCTTTGGTCAGAGTGTTAAGCTTTCTGGGTTGCGTCAGAATTCTCAGCACTATATCTCGTGTGCGATAAATATGACTGCAGGACAGTCGGATGAACCTGGGAAGATGAAATTCGATCACCTGATTAATAAAGCAAGAAAATTGTGGGAAAGCTCTCCACAGCCAGTCAAGATCTTCCCTTGGAAAAGGGCCGTGCAAAACTTTATTCAACTCATCTTTGACCTTATACTAGCAGTTGTCAAATACTTATCTGTACCTTTGTTGGCCGTTTCCTCCCTTAGTGAAATGTCATACTGTGCACATGCGAAGAAGTTGTTTTTAGTTCCTATTCCAGTCCTCATTGGAATGGCTATTGCGGAAGTCTTAAAACTGGCAGCCTTGGATGCTTCCCCACTTCTTAAGGATGCAGAAGTTCCCTGGCATCTGATTGGCATGGCAATCTTCTTCACACTGCTCAAATTGCCAGGTCCATATTACCCATTCTGGGGGAGAATTTTAATCCCACACTTGGCTAATGGGGGGTTGTTAAGGACCTTATGGTTTGCATTTTTGTGGTATAGAAGACCCCAAAGGGTATTGAGAATGGCACCGTCACAAAATTCTGAAAGTGGCAGTCAATCCGAAGTTGAACCAAATAAGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

28.76

Weight (kDa)

9.87

Isoelectric Point (pI)

59.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010427)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49510 AT1G49510 AT1G49510
fragaria_vesca FvH4_2g06990 FvH4_2g07010
malus_domestica MD00G1050600.v1.1
prunus_persica Prupe.8G115700_v2.0.a1
pyrus_communis pycom05g06730
rosa_chinensis RchiOBHm_Chr6g0259351
rosa_laevigata RLG00000014537
rosa_multiflora Rmu_ssc0000050.1_g000059
rosa_roxburghii Rroxscaffold_7G00206590
rosa_rugosa Rorug05G0587800 Rorug05G0587900.1 Rorug05G0588000 Rorug05G0588100
rosa_samantha Rh6AG103800 Rh6BG097000 Rh6CG093200 Rh6DG087000
rosa_wichuraiana Rw6G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 721
AciI CCGC 2 cut(s) 57, 491
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 4 cut(s) 175, 245, 627, 733
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 3 cut(s) 619, 620, 643
AflII CTTAAG 1 cut(s) 533
AgsI TTSAA 2 cut(s) 344, 764
AjnI CCWGG 3 cut(s) 232, 551, 598
AluBI AGCT 3 cut(s) 157, 288, 775
AluI AGCT 3 cut(s) 157, 288, 775
Alw21I GWGCWC 1 cut(s) 436
Alw44I GTGCAC 1 cut(s) 432
AoxI GGCC 3 cut(s) 101, 324, 399
ApaI GGGCCC 1 cut(s) 105
ApaLI GTGCAC 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 509
ApoI RAATTY 4 cut(s) 175, 245, 627, 733
AseI ATTAAT 1 cut(s) 261
AspS9I GGNCC 5 cut(s) 101, 102, 324, 602, 666
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 2 cut(s) 602, 666
BaeGI GKGCMC 2 cut(s) 105, 436
BanI GGYRCC 1 cut(s) 721
BanII GRGCYC 2 cut(s) 79, 105
BauI CACGAG 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 703
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 1 cut(s) 521
BceAI ACGGC 2 cut(s) 311, 386
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BciT130I CCWGG 3 cut(s) 234, 553, 600
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 213
BfrI CTTAAG 1 cut(s) 533
BglII AGATCT 1 cut(s) 306
BisI GCNGC 1 cut(s) 510
BlsI GCNGC 1 cut(s) 511
Bme1390I CCNGG 3 cut(s) 234, 553, 600
Bme18I GGWCC 2 cut(s) 602, 666
BmgT120I GGNCC 5 cut(s) 101, 102, 324, 602, 666
BmiI GGNNCC 2 cut(s) 103, 723
BmrFI CCNGG 3 cut(s) 234, 553, 600
BmsI GCATC 3 cut(s) 508, 529, 565
BpiI GAAGAC 1 cut(s) 703
BsaJI CCNNGG 5 cut(s) 105, 233, 314, 513, 551
Bsc4I CCNNNNNNNGG 3 cut(s) 619, 620, 643
Bse1I ACTGG 3 cut(s) 299, 467, 510
BseBI CCWGG 3 cut(s) 234, 553, 600
BseDI CCNNGG 5 cut(s) 105, 233, 314, 513, 551
BseGI GGATG 3 cut(s) 232, 523, 544
BseLI CCNNNNNNNGG 3 cut(s) 619, 620, 643
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 3 cut(s) 299, 467, 510
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 2 cut(s) 105, 436
BseXI GCAGC 1 cut(s) 521
BshFI GGCC 3 cut(s) 103, 326, 401
BshNI GGYRCC 1 cut(s) 721
BsiHKAI GWGCWC 1 cut(s) 436
BslI CCNNNNNNNGG 3 cut(s) 619, 620, 643
BsnI GGCC 3 cut(s) 103, 326, 401
Bsp120I GGGCCC 1 cut(s) 101
Bsp1286I GDGCHC 3 cut(s) 79, 105, 436
Bsp143I GATC 2 cut(s) 250, 306
BspACI CCGC 2 cut(s) 57, 491
BspANI GGCC 3 cut(s) 103, 326, 401
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 103, 723
BspMAI CTGCAG 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 721
BspTI CTTAAG 1 cut(s) 533
BsrI ACTGG 3 cut(s) 299, 467, 510
BssECI CCNNGG 5 cut(s) 105, 233, 314, 513, 551
BssMI GATC 2 cut(s) 250, 306
BssSI CACGAG 1 cut(s) 193
BssT1I CCWWGG 3 cut(s) 105, 314, 513
Bst2BI CACGAG 1 cut(s) 193
Bst2UI CCWGG 3 cut(s) 234, 553, 600
Bst4CI ACNGT 4 cut(s) 120, 222, 431, 726
BstAFI CTTAAG 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 180, 413
BstF5I GGATG 3 cut(s) 232, 523, 544
BstKTI GATC 2 cut(s) 253, 309
BstMBI GATC 2 cut(s) 250, 306
BstMWI GCNNNNNNNGC 2 cut(s) 518, 595
BstNI CCWGG 3 cut(s) 234, 553, 600
BstNSI RCATGY 2 cut(s) 137, 440
BstSCI CCNGG 3 cut(s) 232, 551, 598
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 2 cut(s) 105, 436
BstV1I GCAGC 1 cut(s) 521
BstV2I GAAGAC 1 cut(s) 703
BstX2I RGATCY 1 cut(s) 306
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 1 cut(s) 306
BsuRI GGCC 3 cut(s) 103, 326, 401
BtsCI GGATG 3 cut(s) 232, 523, 544
BtsI GCAGTG 1 cut(s) 584
BtsIMutI CAGTG 2 cut(s) 125, 584
Cac8I GCNNGC 1 cut(s) 135
Cfr13I GGNCC 5 cut(s) 101, 102, 324, 602, 666
CseI GACGC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 389
CviAII CATG 4 cut(s) 80, 134, 437, 568
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 2 cut(s) 180, 413
DpnI GATC 2 cut(s) 252, 308
DpnII GATC 2 cut(s) 250, 306
EaeI YGGCCR 1 cut(s) 399
Eco130I CCWWGG 3 cut(s) 105, 314, 513
Eco24I GRGCYC 2 cut(s) 79, 105
Eco47I GGWCC 2 cut(s) 602, 666
EcoO109I RGGNCCY 1 cut(s) 666
EcoRI GAATTC 1 cut(s) 175
EcoRII CCWGG 3 cut(s) 232, 551, 598
EcoT14I CCWWGG 3 cut(s) 105, 314, 513
EcoT38I GRGCYC 2 cut(s) 79, 105
ErhI CCWWGG 3 cut(s) 105, 314, 513
FaeI CATG 4 cut(s) 83, 137, 440, 571
FatI CATG 4 cut(s) 79, 133, 436, 567
Fnu4HI GCNGC 1 cut(s) 510
FokI GGATG 3 cut(s) 239, 530, 551
FriOI GRGCYC 2 cut(s) 79, 105
Fsp4HI GCNGC 1 cut(s) 510
FspBI CTAG 1 cut(s) 365
GluI GCNGC 1 cut(s) 510
HaeIII GGCC 3 cut(s) 103, 326, 401
HgaI GACGC 1 cut(s) 158
Hin1II CATG 4 cut(s) 83, 137, 440, 571
HindIII AAGCTT 1 cut(s) 155
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 128, 434
Hpy188I TCNGA 6 cut(s) 147, 174, 226, 561, 739, 757
Hpy188III TCNNGA 1 cut(s) 304
Hpy8I GTNNAC 2 cut(s) 128, 434
HpyAV CCTTC 3 cut(s) 27, 80, 99
HpyCH4III ACNGT 4 cut(s) 120, 222, 431, 726
HpyCH4V TGCA 6 cut(s) 133, 215, 331, 434, 542, 680
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 595
HpyF3I CTNAG 2 cut(s) 180, 413
Hsp92II CATG 4 cut(s) 83, 137, 440, 571
Kzo9I GATC 2 cut(s) 250, 306
LmnI GCTCC 1 cut(s) 88
Lsp1109I GCAGC 1 cut(s) 521
LweI GCATC 3 cut(s) 508, 529, 565
MaeI CTAG 1 cut(s) 365
MaeIII GTNAC 1 cut(s) 726
MalI GATC 2 cut(s) 252, 308
MboI GATC 2 cut(s) 250, 306
MboII GAAGA 6 cut(s) 250, 301, 454, 568, 571, 708
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 3 cut(s) 79, 105, 436
MluCI AATT 6 cut(s) 175, 245, 275, 593, 627, 733
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 6 cut(s) 46, 56, 64, 96, 418, 482
MseI TTAA 6 cut(s) 153, 261, 500, 534, 632, 662
MslI CAYNNNNRTG 2 cut(s) 479, 685
MspCI CTTAAG 1 cut(s) 533
MspR9I CCNGG 3 cut(s) 234, 553, 600
MvaI CCWGG 3 cut(s) 234, 553, 600
MwoI GCNNNNNNNGC 2 cut(s) 518, 595
NdeII GATC 2 cut(s) 250, 306
NlaIII CATG 4 cut(s) 83, 137, 440, 571
NlaIV GGNNCC 2 cut(s) 103, 723
NmuCI GTSAC 1 cut(s) 726
NspI RCATGY 2 cut(s) 137, 440
PaeI GCATGC 1 cut(s) 137
PkrI GCNGC 1 cut(s) 511
PpuMI RGGWCCY 1 cut(s) 666
PshBI ATTAAT 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 666
Psp6I CCWGG 3 cut(s) 232, 551, 598
PspGI CCWGG 3 cut(s) 232, 551, 598
PspN4I GGNNCC 2 cut(s) 103, 723
PspOMI GGGCCC 1 cut(s) 101
PspPI GGNCC 5 cut(s) 101, 102, 324, 602, 666
PspPPI RGGWCCY 1 cut(s) 666
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 1 cut(s) 306
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
RseI CAYNNNNRTG 2 cut(s) 479, 685
SaqAI TTAA 6 cut(s) 153, 261, 500, 534, 632, 662
SatI GCNGC 1 cut(s) 510
Sau3AI GATC 2 cut(s) 250, 306
Sau96I GGNCC 5 cut(s) 101, 102, 324, 602, 666
ScrFI CCNGG 3 cut(s) 234, 553, 600
SduI GDGCHC 3 cut(s) 79, 105, 436
SfaNI GCATC 3 cut(s) 508, 529, 565
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 2 cut(s) 602, 666
SmiMI CAYNNNNRTG 2 cut(s) 479, 685
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
SphI GCATGC 1 cut(s) 137
Sse9I AATT 6 cut(s) 175, 245, 275, 593, 627, 733
SsiI CCGC 2 cut(s) 57, 491
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 3 cut(s) 232, 551, 598
StyI CCWWGG 3 cut(s) 105, 314, 513
TaaI ACNGT 4 cut(s) 120, 222, 431, 726
TaqI TCGA 1 cut(s) 249
TasI AATT 6 cut(s) 175, 245, 275, 593, 627, 733
Tru1I TTAA 6 cut(s) 153, 261, 500, 534, 632, 662
Tru9I TTAA 6 cut(s) 153, 261, 500, 534, 632, 662
TscAI CASTG 2 cut(s) 125, 591
TseFI GTSAC 1 cut(s) 726
TseI GCWGC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 726
TspDTI ATGAA 2 cut(s) 243, 257
TspRI CASTG 2 cut(s) 125, 591
Vha464I CTTAAG 1 cut(s) 533
VneI GTGCAC 1 cut(s) 432
VpaK11BI GGWCC 2 cut(s) 602, 666
VspI ATTAAT 1 cut(s) 261
XapI RAATTY 4 cut(s) 175, 245, 627, 733
XceI RCATGY 2 cut(s) 137, 440
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.