Rh6AG103800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010427
Physical Location & Seq
Reverse (-)
15334049 .. 15336577
2529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG103800.1

Sequence Viewer

Length: 711 bp
ATGACGACTCTCTATCCTTGTCACTTGTTCTCCGCTTCCGTCCACCTCCAGGCCTCCGCCAAATTCGCCGCCCTTAACAATAAGCCTCCCAATTCCATTCATGGCTTCAAGGGTTTGGCACAGTTTAGTGAAGTACATGCCTTTGGTCTGAGTGTTAAGCCTTCTCGTTTGCTTCAGAATTCCCGGTACAATATCTCATGTGCTGTGAACATGACTGCTGGACAGTCGGATGACCCTGGGCAGATAAAATTTGATCACCTAATCGCTAAAGCAAGAAAGTTATGGGAAAGTTCTCCACAGCCAGTCAAGATGTTCCCTTGGAAAAGAGCAGGGCTCAACTTTATTCAACTCATCCTTGACCTTGTACTAGCAGTTGCTAAATACTTATGTGTACCTCTGCTAGTAGTTTCATCTCTTAGTGAGATGTCCTACTGTGCACAGGAAAGGAAGTTGTTTTTCGTTCCTGTACCTGTCATCATTGGAATGGCTATTGCTGAAGTTTTAAAACTGGCAGCCTTGGATGTTTCTCCACTTCTGAAGGATGCAGAAATTCCCTGGCATCTGTTTGTCATGGCAATTTTCTTCACACTGCTCAAATTGCCAGAAGACCTCGGAAGGCATCAACAACAGCATCATCACACCATTCTGACAGTGGCAGTCAATCTGAACCAAATGAACTCTAATTGTTTCGAGCAAGGCCGTACTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.37

Weight (kDa)

9.26

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010427)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49510 AT1G49510 AT1G49510
fragaria_vesca FvH4_2g06990 FvH4_2g07010
malus_domestica MD00G1050600.v1.1
prunus_persica Prupe.8G115700_v2.0.a1
pyrus_communis pycom05g06730
rosa_chinensis RchiOBHm_Chr6g0259351
rosa_laevigata RLG00000014537
rosa_multiflora Rmu_ssc0000050.1_g000059
rosa_roxburghii Rroxscaffold_7G00206590
rosa_rugosa Rorug05G0587800 Rorug05G0587900.1 Rorug05G0588000 Rorug05G0588100
rosa_samantha Rh6AG103800 Rh6BG097000 Rh6CG093200 Rh6DG087000
rosa_wichuraiana Rw6G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 33, 57, 69
AcsI RAATTY 4 cut(s) 62, 178, 248, 549
AcuI CTGAAG 3 cut(s) 158, 516, 557
AfaI GTAC 6 cut(s) 135, 188, 366, 393, 468, 703
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 2 cut(s) 109, 347
AjnI CCWGG 3 cut(s) 48, 235, 554
Alw21I GWGCWC 1 cut(s) 439
Alw44I GTGCAC 1 cut(s) 435
AoxI GGCC 2 cut(s) 51, 697
ApaLI GTGCAC 1 cut(s) 435
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 4 cut(s) 62, 178, 248, 549
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 248
BaeGI GKGCMC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 1 cut(s) 524
BceAI ACGGC 1 cut(s) 684
BciT130I CCWGG 3 cut(s) 50, 237, 556
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 184
BfaI CTAG 3 cut(s) 368, 401, 705
BisI GCNGC 2 cut(s) 69, 513
BlsI GCNGC 2 cut(s) 70, 514
Bme1390I CCNGG 4 cut(s) 50, 184, 237, 556
BmrFI CCNGG 4 cut(s) 50, 184, 237, 556
BmsI GCATC 4 cut(s) 532, 568, 628, 640
BpiI GAAGAC 1 cut(s) 612
BplI GAGNNNNNCTC 2 cut(s) 318, 350
BpmI CTGGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 184
BsaJI CCNNGG 6 cut(s) 235, 236, 317, 516, 554, 610
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 2 cut(s) 302, 513
BseBI CCWGG 3 cut(s) 50, 237, 556
BseDI CCNNGG 6 cut(s) 235, 236, 317, 516, 554, 610
BseGI GGATG 4 cut(s) 235, 351, 526, 547
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 302, 513
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 1 cut(s) 524
BshFI GGCC 2 cut(s) 53, 699
BsiHKAI GWGCWC 1 cut(s) 439
BsiSI CCGG 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 49
BsnI GGCC 2 cut(s) 53, 699
Bsp1286I GDGCHC 2 cut(s) 336, 439
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 3 cut(s) 33, 57, 69
BspANI GGCC 2 cut(s) 53, 699
BspCNI CTCAG 1 cut(s) 141
BsrI ACTGG 2 cut(s) 302, 513
BssECI CCNNGG 6 cut(s) 235, 236, 317, 516, 554, 610
BssMI GATC 1 cut(s) 253
BssT1I CCWWGG 2 cut(s) 317, 516
Bst2UI CCWGG 3 cut(s) 50, 237, 556
Bst4CI ACNGT 4 cut(s) 123, 225, 434, 652
BstDEI CTNAG 2 cut(s) 149, 416
BstF5I GGATG 4 cut(s) 235, 351, 526, 547
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 2 cut(s) 65, 598
BstNI CCWGG 3 cut(s) 50, 237, 556
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 4 cut(s) 48, 182, 235, 554
BstSLI GKGCMC 1 cut(s) 439
BstV1I GCAGC 1 cut(s) 524
BstV2I GAAGAC 1 cut(s) 612
BsuRI GGCC 2 cut(s) 53, 699
BtsCI GGATG 4 cut(s) 235, 351, 526, 547
BtsI GCAGTG 1 cut(s) 587
BtsIMutI CAGTG 2 cut(s) 587, 657
Csp6I GTAC 6 cut(s) 134, 187, 365, 392, 467, 702
CviAII CATG 5 cut(s) 101, 137, 198, 211, 571
CviJI RGCY 9 cut(s) 53, 85, 105, 160, 301, 334, 488, 515, 699
CviKI_1 RGCY 9 cut(s) 53, 85, 105, 160, 301, 334, 488, 515, 699
CviQI GTAC 6 cut(s) 134, 187, 365, 392, 467, 702
DdeI CTNAG 2 cut(s) 149, 416
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
DraI TTTAAA 1 cut(s) 504
EciI GGCGGA 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 317, 516
Eco147I AGGCCT 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 336
Eco57I CTGAAG 3 cut(s) 158, 516, 557
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 3 cut(s) 48, 235, 554
EcoT14I CCWWGG 2 cut(s) 317, 516
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 2 cut(s) 317, 516
FaeI CATG 5 cut(s) 104, 140, 201, 214, 574
FaiI YATR 7 cut(s) 102, 138, 199, 212, 283, 388, 572
FatI CATG 5 cut(s) 100, 136, 197, 210, 570
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 69, 513
FokI GGATG 4 cut(s) 242, 338, 533, 554
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 69, 513
FspBI CTAG 3 cut(s) 368, 401, 705
GluI GCNGC 2 cut(s) 69, 513
GsuI CTGGAG 1 cut(s) 32
HaeIII GGCC 2 cut(s) 53, 699
HapII CCGG 1 cut(s) 184
Hin1II CATG 5 cut(s) 104, 140, 201, 214, 574
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 184
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 4 cut(s) 43, 208, 392, 437
Hpy188I TCNGA 7 cut(s) 150, 177, 229, 537, 614, 648, 666
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 4 cut(s) 43, 208, 392, 437
HpyAV CCTTC 3 cut(s) 171, 532, 609
HpyCH4III ACNGT 4 cut(s) 123, 225, 434, 652
HpyCH4V TGCA 2 cut(s) 437, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 598
HpyF3I CTNAG 2 cut(s) 149, 416
Hsp92II CATG 5 cut(s) 104, 140, 201, 214, 574
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 1 cut(s) 253
Lsp1109I GCAGC 1 cut(s) 524
LweI GCATC 4 cut(s) 532, 568, 628, 640
MaeI CTAG 3 cut(s) 368, 401, 705
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 2 cut(s) 574, 617
MhlI GDGCHC 2 cut(s) 336, 439
MluCI AATT 8 cut(s) 62, 91, 178, 248, 549, 576, 596, 682
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 5 cut(s) 56, 64, 96, 405, 620
MseI TTAA 3 cut(s) 75, 156, 503
MslI CAYNNNNRTG 1 cut(s) 482
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 4 cut(s) 50, 184, 237, 556
MvaI CCWGG 3 cut(s) 50, 237, 556
MwoI GCNNNNNNNGC 2 cut(s) 65, 598
NciI CCSGG 1 cut(s) 184
NdeII GATC 1 cut(s) 253
NlaIII CATG 5 cut(s) 104, 140, 201, 214, 574
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 140
PasI CCCWGGG 1 cut(s) 236
PceI AGGCCT 1 cut(s) 53
PkrI GCNGC 2 cut(s) 70, 514
Psp6I CCWGG 3 cut(s) 48, 235, 554
PspGI CCWGG 3 cut(s) 48, 235, 554
RsaI GTAC 6 cut(s) 135, 188, 366, 393, 468, 703
RsaNI GTAC 6 cut(s) 134, 187, 365, 392, 467, 702
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 3 cut(s) 75, 156, 503
SatI GCNGC 2 cut(s) 69, 513
Sau3AI GATC 1 cut(s) 253
ScrFI CCNGG 4 cut(s) 50, 184, 237, 556
SduI GDGCHC 2 cut(s) 336, 439
SetI ASST 7 cut(s) 48, 261, 363, 397, 472, 612, 710
SfaNI GCATC 4 cut(s) 532, 568, 628, 640
SmiMI CAYNNNNRTG 1 cut(s) 482
Sse9I AATT 8 cut(s) 62, 91, 178, 248, 549, 576, 596, 682
SseBI AGGCCT 1 cut(s) 53
SsiI CCGC 3 cut(s) 33, 57, 69
SspMI CTAG 3 cut(s) 368, 401, 705
StuI AGGCCT 1 cut(s) 53
StyD4I CCNGG 4 cut(s) 48, 182, 235, 554
StyI CCWWGG 2 cut(s) 317, 516
TaaI ACNGT 4 cut(s) 123, 225, 434, 652
TaqI TCGA 1 cut(s) 690
TasI AATT 8 cut(s) 62, 91, 178, 248, 549, 576, 596, 682
TatI WGTACW 2 cut(s) 133, 364
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 3 cut(s) 75, 156, 503
Tru9I TTAA 3 cut(s) 75, 156, 503
TscAI CASTG 2 cut(s) 594, 657
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 512
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 89, 399, 689
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 594, 657
VneI GTGCAC 1 cut(s) 435
XapI RAATTY 4 cut(s) 62, 178, 248, 549
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
XspI CTAG 3 cut(s) 368, 401, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.