FvH4_2g07010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010427
Physical Location & Seq
Reverse (-)
5768715 .. 5770951
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07010.t1

Sequence Viewer

Length: 762 bp
ATGACGACTCTGTATCCTTGTCACTTGCTCTCTGCTTCGACCCATCCCCAGGTCTCCGCCAAATTGGCCCTTCACAATAAACCCCCCAATTCCATTCATGGGTTCACGGCTTTGGCACAGTTTAGTGAAGTACATGCCTTTGGTCGGAGTGCTAAGCCTTCTCATTTGCTTCAGAATTCCCAGTACAATATCTCATGTGCTATGAATATGACTGCTGGACAGTCAGATGACCCTGGGCAGATTAAATTTGATCACCTAATCGCTAAAGCAAGAAAGTTGTGGGATAGTTCTCCACAGCCAGTCAAGATATTCCCTTGGAAAAGAGCAGGGCTCAACTATTTTCAACTCATCCTTGACCTTGTACTAGCAGTTGTCAAATACTTATGTGTACCTTTGCTAGCAGTTTCCTCTCTTAGTGAGATGTCCTACTGCGCACAGGAAAGGAAGTTGTTTTTTGTTCCTATACCTGTCATCATTGGAATCGCTGTTGCTGAAGTCTTAAATCTGGCAGCCGTGGATGTTTCTCCACTTCTGAAGGATACAGAAGTTCCCTGGCATCTTTTTGTCATGGCAATTTTCTTTACACTGCTCAAATTGCCAGGTCCATATTACCCATATTGGGGCCGAATAATAATCCCACACATTGCCAATGGCGGTTTGTTAAGGACACTGTGGTTTGCCTTTATGCGGTACAGAAGACCTCGAAAAGCATCACCACACCATTCTAAAAGTGGCAGCCAATCGGAACCAAATGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.34

Weight (kDa)

9.54

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010427)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49510 AT1G49510 AT1G49510
fragaria_vesca FvH4_2g06990 FvH4_2g07010
malus_domestica MD00G1050600.v1.1
prunus_persica Prupe.8G115700_v2.0.a1
pyrus_communis pycom05g06730
rosa_chinensis RchiOBHm_Chr6g0259351
rosa_laevigata RLG00000014537
rosa_multiflora Rmu_ssc0000050.1_g000059
rosa_roxburghii Rroxscaffold_7G00206590
rosa_rugosa Rorug05G0587800 Rorug05G0587900.1 Rorug05G0588000 Rorug05G0588100
rosa_samantha Rh6AG103800 Rh6BG097000 Rh6CG093200 Rh6DG087000
rosa_wichuraiana Rw6G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 433
AciI CCGC 3 cut(s) 57, 654, 688
AcsI RAATTY 2 cut(s) 175, 245
AcuI CTGAAG 3 cut(s) 155, 513, 554
AfaI GTAC 5 cut(s) 132, 185, 363, 390, 692
AfiI CCNNNNNNNGG 6 cut(s) 49, 99, 144, 619, 620, 687
AgsI TTSAA 1 cut(s) 344
AjnI CCWGG 4 cut(s) 48, 232, 551, 598
Alw26I GTCTC 1 cut(s) 58
AoxI GGCC 2 cut(s) 66, 622
ApeKI GCWGC 2 cut(s) 509, 735
ApoI RAATTY 2 cut(s) 175, 245
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 3 cut(s) 67, 602, 622
AsuHPI GGTGA 2 cut(s) 245, 705
AsuNHI GCTAGC 1 cut(s) 397
AvaII GGWCC 1 cut(s) 602
BaeI ACNNNNGTAYC 2 cut(s) 531, 564
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 703
BbvI GCAGC 2 cut(s) 521, 747
BccI CCATC 1 cut(s) 51
BceAI ACGGC 2 cut(s) 123, 497
BciT130I CCWGG 4 cut(s) 50, 234, 553, 600
BciVI GTATCC 2 cut(s) 24, 532
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 2 cut(s) 365, 398
BfuI GTATCC 2 cut(s) 24, 532
BglI GCCNNNNNGGC 1 cut(s) 65
BisI GCNGC 2 cut(s) 510, 736
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 2 cut(s) 511, 737
Bme1390I CCNGG 4 cut(s) 50, 234, 553, 600
Bme18I GGWCC 1 cut(s) 602
BmgT120I GGNCC 3 cut(s) 67, 602, 622
BmiI GGNNCC 2 cut(s) 623, 747
BmrFI CCNGG 4 cut(s) 50, 234, 553, 600
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 2 cut(s) 565, 719
BmtI GCTAGC 1 cut(s) 401
BmuI ACTGGG 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 703
BplI GAGNNNNNCTC 2 cut(s) 315, 347
Bpu1102I GCTNAGC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 6 cut(s) 48, 232, 233, 314, 513, 551
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 99, 144, 619, 620, 687
Bse1I ACTGG 2 cut(s) 181, 299
Bse3DI GCAATG 1 cut(s) 642
BseBI CCWGG 4 cut(s) 50, 234, 553, 600
BseDI CCNNGG 6 cut(s) 48, 232, 233, 314, 513, 551
BseGI GGATG 3 cut(s) 43, 348, 523
BseLI CCNNNNNNNGG 6 cut(s) 49, 99, 144, 619, 620, 687
BseMI GCAATG 1 cut(s) 642
BseNI ACTGG 2 cut(s) 181, 299
BseXI GCAGC 2 cut(s) 521, 747
BshFI GGCC 2 cut(s) 68, 624
BslI CCNNNNNNNGG 6 cut(s) 49, 99, 144, 619, 620, 687
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 2 cut(s) 68, 624
Bso31I GGTCTC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 1 cut(s) 250
Bsp1720I GCTNAGC 1 cut(s) 153
BspACI CCGC 3 cut(s) 57, 654, 688
BspANI GGCC 2 cut(s) 68, 624
BspLI GGNNCC 2 cut(s) 623, 747
BspOI GCTAGC 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 642
BsrI ACTGG 2 cut(s) 181, 299
BssECI CCNNGG 6 cut(s) 48, 232, 233, 314, 513, 551
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 314
Bst2UI CCWGG 4 cut(s) 50, 234, 553, 600
Bst4CI ACNGT 3 cut(s) 120, 222, 672
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 2 cut(s) 153, 413
BstDSI CCRYGG 1 cut(s) 513
BstF5I GGATG 3 cut(s) 43, 348, 523
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 65, 595
BstNI CCWGG 4 cut(s) 50, 234, 553, 600
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 4 cut(s) 48, 232, 551, 598
BstV1I GCAGC 2 cut(s) 521, 747
BstV2I GAAGAC 1 cut(s) 703
BsuI GTATCC 2 cut(s) 24, 532
BsuRI GGCC 2 cut(s) 68, 624
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 3 cut(s) 43, 348, 523
BtsI GCAGTG 1 cut(s) 584
BtsIMutI CAGTG 2 cut(s) 584, 668
Cac8I GCNNGC 1 cut(s) 399
CfoI GCGC 1 cut(s) 434
Cfr13I GGNCC 3 cut(s) 67, 602, 622
Csp6I GTAC 5 cut(s) 131, 184, 362, 389, 691
CviAII CATG 4 cut(s) 98, 134, 195, 568
CviJI RGCY 8 cut(s) 68, 110, 157, 298, 331, 512, 624, 738
CviKI_1 RGCY 8 cut(s) 68, 110, 157, 298, 331, 512, 624, 738
CviQI GTAC 5 cut(s) 131, 184, 362, 389, 691
DdeI CTNAG 2 cut(s) 153, 413
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
EciI GGCGGA 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 602
Eco57I CTGAAG 3 cut(s) 155, 513, 554
EcoRI GAATTC 1 cut(s) 175
EcoRII CCWGG 4 cut(s) 48, 232, 551, 598
EcoT14I CCWWGG 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 4 cut(s) 101, 137, 198, 571
FatI CATG 4 cut(s) 97, 133, 194, 567
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 510, 736
FokI GGATG 3 cut(s) 30, 335, 530
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 2 cut(s) 510, 736
FspBI CTAG 2 cut(s) 365, 398
FspI TGCGCA 1 cut(s) 433
GlaI GCGC 1 cut(s) 433
GluI GCNGC 2 cut(s) 510, 736
HaeIII GGCC 2 cut(s) 68, 624
HhaI GCGC 1 cut(s) 434
Hin1II CATG 4 cut(s) 101, 137, 198, 571
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HinfI GANTC 2 cut(s) 7, 480
HphI GGTGA 2 cut(s) 245, 705
Hpy166II GTNNAC 2 cut(s) 105, 389
Hpy188I TCNGA 5 cut(s) 147, 174, 226, 534, 745
Hpy188III TCNNGA 1 cut(s) 304
Hpy8I GTNNAC 2 cut(s) 105, 389
HpyAV CCTTC 3 cut(s) 80, 168, 529
HpyCH4III ACNGT 3 cut(s) 120, 222, 672
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 595
HpyF3I CTNAG 2 cut(s) 153, 413
Hsp92II CATG 4 cut(s) 101, 137, 198, 571
HspAI GCGC 1 cut(s) 432
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 1 cut(s) 250
Lsp1109I GCAGC 2 cut(s) 521, 747
LweI GCATC 2 cut(s) 565, 719
MaeI CTAG 2 cut(s) 365, 398
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 1 cut(s) 708
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 6 cut(s) 62, 88, 175, 245, 573, 593
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 2 cut(s) 418, 711
MseI TTAA 3 cut(s) 243, 500, 662
MspR9I CCNGG 4 cut(s) 50, 234, 553, 600
MvaI CCWGG 4 cut(s) 50, 234, 553, 600
MwoI GCNNNNNNNGC 2 cut(s) 65, 595
NdeII GATC 1 cut(s) 250
NheI GCTAGC 1 cut(s) 397
NlaIII CATG 4 cut(s) 101, 137, 198, 571
NlaIV GGNNCC 2 cut(s) 623, 747
NmuCI GTSAC 1 cut(s) 20
NsbI TGCGCA 1 cut(s) 433
NspI RCATGY 1 cut(s) 137
PasI CCCWGGG 1 cut(s) 233
PfeI GAWTC 1 cut(s) 480
PkrI GCNGC 2 cut(s) 511, 737
Psp6I CCWGG 4 cut(s) 48, 232, 551, 598
PspGI CCWGG 4 cut(s) 48, 232, 551, 598
PspN4I GGNNCC 2 cut(s) 623, 747
PspPI GGNCC 3 cut(s) 67, 602, 622
RsaI GTAC 5 cut(s) 132, 185, 363, 390, 692
RsaNI GTAC 5 cut(s) 131, 184, 362, 389, 691
SaqAI TTAA 3 cut(s) 243, 500, 662
SatI GCNGC 2 cut(s) 510, 736
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 3 cut(s) 67, 602, 622
ScrFI CCNGG 4 cut(s) 50, 234, 553, 600
SduI GDGCHC 1 cut(s) 333
SetI ASST 7 cut(s) 54, 258, 360, 394, 469, 604, 703
SfaNI GCATC 2 cut(s) 565, 719
SinI GGWCC 1 cut(s) 602
Sse9I AATT 6 cut(s) 62, 88, 175, 245, 573, 593
SsiI CCGC 3 cut(s) 57, 654, 688
SspMI CTAG 2 cut(s) 365, 398
StyD4I CCNGG 4 cut(s) 48, 232, 551, 598
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 3 cut(s) 120, 222, 672
TaqI TCGA 2 cut(s) 38, 703
TasI AATT 6 cut(s) 62, 88, 175, 245, 573, 593
TatI WGTACW 3 cut(s) 130, 183, 361
TfiI GAWTC 1 cut(s) 480
Tru1I TTAA 3 cut(s) 243, 500, 662
Tru9I TTAA 3 cut(s) 243, 500, 662
TscAI CASTG 2 cut(s) 591, 675
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 509, 735
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 86, 218
TspRI CASTG 2 cut(s) 591, 675
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 2 cut(s) 175, 245
XceI RCATGY 1 cut(s) 137
XcmI CCANNNNNNNNNTGG 1 cut(s) 728
XspI CTAG 2 cut(s) 365, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.