Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003341

Physical Location & Seq

Genomic Coordinates Forward (+)

18329659 .. 18332102

Gene Structure 2444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGTTTCGGACTCGGACCTCGTGACCCAGCTCCGGGAAATTCTCCGTAGCTCCGACCTAGAAACTACGACTCCGGCGAGCGTTCGCCGTCAGCTGGAGGTGTATTTCGGCGTCGAATTAACCGATAAGAAAGCTTTCGTCAGGGAACAAATCGATGCTTTTCTTGAAAGCGATGCTTTGTTAGAAAGCAAACCCGAGCAAGAAGAAGAAGACTGTAATGGCGATCAAAACGATGAAGAGGGAAGTGAAAACGATGATGATAAGACCGAACTACCGGTAAAGGCTAAGAAACGTGGAGGTGGGTTTAACAAAATATGTCAGCTTTCACCACAACTAGAGAAGTTTTTAGGAACTTCTCAATTGGCTCGAACAGAGGTTGTGAAGAAAATGTGGGCGTATATCCGAGAGCACGATTTGCAAGATCCAACGAATAGGCGGAATATATTATGCGACGAGTCGCTTCATTCGTTATTTCGTGTAAAGACAATTAATATGTTTCAAATGAACAAGGCATTGGCAAAGCATATTTGGGCGCTAAATGATGGAGATGGGTGTTTTAAGAATGTGAAAGAGGAAGATGTTGATGAGACATCAGGGGAAAGAGACGAGAAAGATGTAAAAATCGAAGAAGCGTTAGAGAATAACGAAGAAGAGAGTAGAGAAGAAGAAGATCGTAGTGTCCGAAAACGCAAACGCAAGAAAAGAAAACCAGCCAAGTCCGAGGAGAAACCGAAGAAAAAAGGAGGTGGTTTTACCAAAGTTTGCAGTCTTTCACCAGAACTTCAGGCTTTTACTGGAACGCCTCAGTTAGCTAGAACAGAGGTTGTGAAAATGCTTTGGAAATACATAAAGGAGAACAATTTGCAAGATCCATCTGATAAACGCACAATAATATGCGACGAATCATTGCGGTCTCTGTTCCCTGTGGAGTCTATCAATATGTTTCAAATGAACAAACAACTAGCCAAACACATTTGGCCTCTAGTACAGGAGGATGAAGCAGGAACAACTAATGATCCAGAGAAGGGAAAGCAGAAAATGAAAATGGAGACAGACGAAGATAATGATGAATCAAATGAAGAAAAGGCTACTTCATCAAGAATCAAAACTGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

372

Amino Acids

42.86

Weight (kDa)

5.04

Isoelectric Point (pI)

67.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	2 - 55	3.2e-18	DEK C terminal domain
SWIB	PF02201	104 - 176	2.8e-30	SWIB/MDM2 domain
SWIB	PF02201	254 - 325	8.8e-31	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49520 AT3G19080 AT3G19080 AT3G19080 AT3G19080
fragaria_vesca	FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890
malus_domestica	MD10G1089200.v1.1
prunus_persica	Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1
pyrus_communis	pycom05g06780 pycom10g07210
rosa_chinensis	RchiOBHm_Chr6g0259201
rosa_laevigata	RLG00000014549
rosa_multiflora	Rmu_ssc0000050.1_g000095
rosa_roxburghii	Rroxscaffold_7G00206510
rosa_rugosa	Rorug05G0585700 Rorug05G0585800 Rorug05G0585900
rosa_samantha	Rh6AG102700 Rh6BG095000 Rh6BG095100 Rh6CG092000 Rh6DG086000
rosa_wichuraiana	Rw6G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	436, 910
AclWI	GGATC	3 cut(s)	416, 863, 1010
AcsI	RAATTY	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	767
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	987
AfiI	CCNNNNNNNGG	4 cut(s)	33, 34, 94, 1025
AgeI	ACCGGT	1 cut(s)	274
AgsI	TTSAA	3 cut(s)	167, 500, 947
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AluBI	AGCT	6 cut(s)	31, 51, 94, 134, 322, 812
AluI	AGCT	6 cut(s)	31, 51, 94, 134, 322, 812
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	4 cut(s)	581, 597, 918, 1043
AlwI	GGATC	3 cut(s)	416, 863, 1010
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	1 cut(s)	977
ApoI	RAATTY	1 cut(s)	39
AseI	ATTAAT	1 cut(s)	489
AsiGI	ACCGGT	1 cut(s)	274
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	2 cut(s)	318, 765
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	16
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	411
BccI	CCATC	3 cut(s)	536, 542, 880
BceAI	ACGGC	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	4 cut(s)	581, 597, 918, 1043
BfaI	CTAG	5 cut(s)	59, 335, 813, 962, 983
BfoI	RGCGCY	1 cut(s)	536
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	2 cut(s)	145, 163
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	35
Bsa29I	ATCGAT	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	918
BsaJI	CCNNGG	1 cut(s)	720
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	4 cut(s)	33, 34, 94, 1025
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	799
Bse3DI	GCAATG	1 cut(s)	905
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	720
BseGI	GGATG	1 cut(s)	1000
BseLI	CCNNNNNNNGG	4 cut(s)	33, 34, 94, 1025
BseMI	GCAATG	1 cut(s)	905
BseMII	CTCAG	1 cut(s)	818
BseNI	ACTGG	1 cut(s)	799
BseRI	GAGGAG	1 cut(s)	737
BseYI	CCCAGC	1 cut(s)	27
BshFI	GGCC	1 cut(s)	979
BshTI	ACCGGT	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	3 cut(s)	34, 74, 275
BslI	CCNNNNNNNGG	4 cut(s)	33, 34, 94, 1025
BsmAI	GTCTC	4 cut(s)	581, 597, 918, 1043
BsmBI	CGTCTC	1 cut(s)	597
BsnI	GGCC	1 cut(s)	979
Bso31I	GGTCTC	1 cut(s)	918
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	5 cut(s)	223, 421, 670, 868, 1015
BspACI	CCGC	2 cut(s)	436, 910
BspANI	GGCC	1 cut(s)	979
BspCNI	CTCAG	1 cut(s)	817
BspDI	ATCGAT	1 cut(s)	153
BspPI	GGATC	3 cut(s)	416, 863, 1010
BspTNI	GGTCTC	1 cut(s)	918
BsrDI	GCAATG	1 cut(s)	905
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	799
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	720
BssMI	GATC	5 cut(s)	223, 421, 670, 868, 1015
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	2 cut(s)	231, 645
BstACI	GRCGYC	1 cut(s)	111
BstAPI	GCANNNNNTGC	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	285, 804
BstF5I	GGATG	1 cut(s)	1000
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	5 cut(s)	226, 424, 673, 871, 1018
BstMAI	GTCTC	4 cut(s)	581, 597, 918, 1043
BstMBI	GATC	5 cut(s)	223, 421, 670, 868, 1015
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	421, 868
BstYI	RGATCY	2 cut(s)	421, 868
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	979
BsuTUI	ATCGAT	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	1000
Cac8I	GCNNGC	1 cut(s)	79
CfoI	GCGC	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	153
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	986
CspAI	ACCGGT	1 cut(s)	274
CviQI	GTAC	1 cut(s)	986
DdeI	CTNAG	2 cut(s)	285, 804
DpnI	GATC	5 cut(s)	225, 423, 672, 870, 1017
DpnII	GATC	5 cut(s)	223, 421, 670, 868, 1015
Eam1104I	CTCTTC	2 cut(s)	231, 645
EarI	CTCTTC	2 cut(s)	231, 645
EciI	GGCGGA	1 cut(s)	451
Eco31I	GGTCTC	1 cut(s)	918
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	767
Eco88I	CYCGRG	1 cut(s)	194
Esp3I	CGTCTC	1 cut(s)	597
FaiI	YATR	9 cut(s)	316, 399, 443, 448, 494, 525, 848, 895, 941
FalI	AAGNNNNNCTT	2 cut(s)	160, 192
FokI	GGATG	1 cut(s)	1007
FspBI	CTAG	5 cut(s)	59, 335, 813, 962, 983
GlaI	GCGC	1 cut(s)	534
GsaI	CCCAGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	1 cut(s)	979
HapII	CCGG	3 cut(s)	34, 74, 275
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	535
Hin1I	GRCGYC	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	7 cut(s)	11, 70, 455, 902, 929, 1070, 1101
HpaII	CCGG	3 cut(s)	34, 74, 275
HphI	GGTGA	2 cut(s)	318, 765
Hpy188I	TCNGA	7 cut(s)	10, 16, 55, 404, 683, 721, 877
Hpy188III	TCNNGA	4 cut(s)	22, 164, 1019, 1098
Hpy99I	CGWCG	3 cut(s)	116, 455, 902
HpyAV	CCTTC	1 cut(s)	1018
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	3 cut(s)	418, 765, 865
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	2 cut(s)	285, 804
HpySE526I	ACGT	1 cut(s)	292
Hsp92I	GRCGYC	1 cut(s)	111
HspAI	GCGC	1 cut(s)	533
Kzo9I	GATC	5 cut(s)	223, 421, 670, 868, 1015
LmnI	GCTCC	2 cut(s)	36, 56
LweI	GCATC	2 cut(s)	145, 163
MaeI	CTAG	5 cut(s)	59, 335, 813, 962, 983
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	5 cut(s)	225, 423, 672, 870, 1017
MboI	GATC	5 cut(s)	223, 421, 670, 868, 1015
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	2 cut(s)	421, 868
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	5 cut(s)	39, 116, 359, 486, 859
MlyI	GAGTC	4 cut(s)	5, 64, 464, 938
MmeI	TCCRAC	2 cut(s)	78, 449
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	4 cut(s)	119, 306, 489, 558
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	3 cut(s)	34, 74, 275
MspR9I	CCNGG	1 cut(s)	35
MunI	CAATTG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	415
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	5 cut(s)	223, 421, 670, 868, 1015
NmuCI	GTSAC	1 cut(s)	22
PcsI	WCGNNNNNNNCGW	4 cut(s)	74, 120, 464, 679
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	3 cut(s)	902, 1070, 1101
PfoI	TCCNGGA	1 cut(s)	33
PinAI	ACCGGT	1 cut(s)	274
PleI	GAGTC	4 cut(s)	5, 64, 463, 937
PpsI	GAGTC	4 cut(s)	5, 64, 463, 937
PshBI	ATTAAT	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	2 cut(s)	421, 868
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	987
RsaNI	GTAC	1 cut(s)	986
SaqAI	TTAA	4 cut(s)	119, 306, 489, 558
Sau3AI	GATC	5 cut(s)	223, 421, 670, 868, 1015
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	4 cut(s)	5, 64, 464, 938
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	411
SfaNI	GCATC	2 cut(s)	145, 163
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	5 cut(s)	39, 116, 359, 486, 859
SsiI	CCGC	2 cut(s)	436, 910
SspMI	CTAG	5 cut(s)	59, 335, 813, 962, 983
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	4 cut(s)	114, 153, 367, 624
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	5 cut(s)	39, 116, 359, 486, 859
TatI	WGTACW	1 cut(s)	985
TfiI	GAWTC	3 cut(s)	902, 1070, 1101
Tru1I	TTAA	4 cut(s)	119, 306, 489, 558
Tru9I	TTAA	4 cut(s)	119, 306, 489, 558
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	9 cut(s)	249, 452, 518, 965, 1011, 1055, 1083, 1083, 1092
TspGWI	ACGGA	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	5 cut(s)	59, 335, 813, 962, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.