Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003341

Physical Location & Seq

Genomic Coordinates Forward (+)

9524246 .. 9532626

Gene Structure 8381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g06780.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGTATCGGACTCGGAACTCCTGACCCGGCTCAGAGAAATCCTCCGCAGTTCGGACCTAGACACGGCCACCGCCGGCAGCGTCCGCCGGAAACTCGAAGCCGATTTCGGAGTTGATCTTTCGGACCGGAAAAAGTTTATCCGGGACCAAATCGACATCTACCTCGAGACCCAGACCAAACCCCAAGGCGAAGAAGCAGAGGAGGAGGATGAGGTCGGTGAATCCTCGGAGAATGCAGAACAGAACGACGACGTTAAGGAAGAAGACGAAGAAGAAGAGGAGGAGGAAGAGGAAGAGAAGGAAAGCAAAAGTAAAAGGAGAAAAACGGTGGATAAAGTTGTTGTCAAAAGAGGTGGCTTCAATAAAATATGTAGCTTGTCTCCACAACTTCAAGAATTTGTTGGGGTGCCCGAAATGGCAAGAACAGAGGTGGTCAAGAGAATTTGGGCCTATATCCGGGAAAAGGATTTGCAGGACCCAAAAAATAGAAGAAACATTAGATGTGATGAATCACTACATTCCCTGTTCCGTGTTAATTCTATTAATATGTTTCAAATGAATAAAGTCCTCTCCAAGCATATATGGCCACTTAGCAGGGAAGATGAACCTGTAAAGCAAAAGAAGAAAGTGGAAGAAAGTGATCATTCTATCTCTGAAGGAGATGTAAGTAATGTAGCGGAACAGGAGGAAGAAGAGGAGGTGGAGGTTAAAAAAGTTAGTAGACGAAAAGAAAACAAGAAACGAAGGTCTACTAAAGTGGATAAAGAAGTCAAGAAAAGGGGAGGTGGAGGTGGCTTTACCAAATTATGCAGCCTTTCTCCAGAACTTCAAAAGTTCACTGGAGTGTCAGCATTGGCCAGAACAGAGGTCGTGAAGAAACTTTGGATTTATATCCGGGAGAACAATTTGCAAGATCCAAAGAATAAACGAGATATAATATGTGATGAGTCATTGCGTGGCCTTTTTGACGTTGATTGTATCAATATGTTTCAAATGAATAAAGCTCTGTCCAAGCACATCTTGCCCTTAAGTGAAGAAGCAGCTCCAGACAACACTTCACAAAAGGAAAAGCAGTCTGAAGAGGAGGAAGAAGGTGAGATAAATAAATTCAGGTCTTCAGGTTATCAAACTTTGTTGGTTTGCAGAGTTATTGTGCATTCATACCACATCCCGCATGCTGGTACTGGATTAATCCAAATAAGATTGGGATCCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

406

Amino Acids

46.66

Weight (kDa)

5.33

Isoelectric Point (pI)

75.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49520 AT3G19080 AT3G19080 AT3G19080 AT3G19080
fragaria_vesca	FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890
malus_domestica	MD10G1089200.v1.1
prunus_persica	Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1
pyrus_communis	pycom05g06780 pycom10g07210
rosa_chinensis	RchiOBHm_Chr6g0259201
rosa_laevigata	RLG00000014549
rosa_multiflora	Rmu_ssc0000050.1_g000095
rosa_roxburghii	Rroxscaffold_7G00206510
rosa_rugosa	Rorug05G0585700 Rorug05G0585800 Rorug05G0585900
rosa_samantha	Rh6AG102700 Rh6BG095000 Rh6BG095100 Rh6CG092000 Rh6DG086000
rosa_wichuraiana	Rw6G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	406
AccI	GTMKAC	2 cut(s)	721, 749
AciI	CCGC	5 cut(s)	46, 72, 85, 677, 1172
AclWI	GGATC	3 cut(s)	908, 1203, 1216
AcoI	YGGCCR	3 cut(s)	66, 584, 855
AcsI	RAATTY	3 cut(s)	395, 441, 1106
AcuI	CTGAAG	3 cut(s)	675, 1098, 1101
AfaI	GTAC	1 cut(s)	1183
AfiI	CCNNNNNNNGG	5 cut(s)	52, 64, 456, 463, 1178
AflII	CTTAAG	1 cut(s)	1027
AgsI	TTSAA	5 cut(s)	361, 392, 554, 830, 992
AleI	CACNNNNGTG	1 cut(s)	842
AluBI	AGCT	3 cut(s)	375, 1004, 1043
AluI	AGCT	3 cut(s)	375, 1004, 1043
Alw26I	GTCTC	2 cut(s)	161, 384
AlwI	GGATC	3 cut(s)	908, 1203, 1216
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	5 cut(s)	66, 447, 584, 855, 958
ApeKI	GCWGC	3 cut(s)	78, 810, 1040
ApoI	RAATTY	3 cut(s)	395, 441, 1106
AseI	ATTAAT	2 cut(s)	543, 1190
AspS9I	GGNCC	5 cut(s)	55, 124, 145, 447, 475
AsuC2I	CCSGG	4 cut(s)	28, 143, 458, 896
AsuHPI	GGTGA	2 cut(s)	230, 1106
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	4 cut(s)	55, 124, 145, 475
BaeGI	GKGCMC	1 cut(s)	411
BalI	TGGCCA	2 cut(s)	586, 857
BamHI	GGATCC	1 cut(s)	1208
BanI	GGYRCC	1 cut(s)	406
BbsI	GAAGAC	2 cut(s)	270, 1107
BbvI	GCAGC	3 cut(s)	90, 822, 1052
BceAI	ACGGC	1 cut(s)	81
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	4 cut(s)	28, 143, 458, 896
BcoDI	GTCTC	2 cut(s)	161, 384
BfaI	CTAG	1 cut(s)	59
BfrI	CTTAAG	1 cut(s)	1027
BisI	GCNGC	3 cut(s)	79, 811, 1041
BlsI	GCNGC	3 cut(s)	80, 812, 1042
Bme1390I	CCNGG	4 cut(s)	28, 143, 458, 896
Bme18I	GGWCC	4 cut(s)	55, 124, 145, 475
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	5 cut(s)	55, 124, 145, 447, 475
BmiI	GGNNCC	4 cut(s)	146, 408, 477, 1210
BmrFI	CCNGG	4 cut(s)	28, 143, 458, 896
BpiI	GAAGAC	2 cut(s)	270, 1107
BplI	GAGNNNNNCTC	2 cut(s)	27, 59
BpmI	CTGGAG	3 cut(s)	804, 861, 1029
BpuMI	CCSGG	4 cut(s)	28, 143, 458, 896
BsaBI	GATNNNNATC	2 cut(s)	890, 1207
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	184, 225
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 64, 456, 463, 1178
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	844, 1189
Bse3DI	GCAATG	1 cut(s)	950
Bse8I	GATNNNNATC	2 cut(s)	890, 1207
BseDI	CCNNGG	2 cut(s)	184, 225
BseGI	GGATG	2 cut(s)	214, 1167
BseJI	GATNNNNATC	2 cut(s)	890, 1207
BseLI	CCNNNNNNNGG	5 cut(s)	52, 64, 456, 463, 1178
BseMI	GCAATG	1 cut(s)	950
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	2 cut(s)	844, 1189
BseRI	GAGGAG	6 cut(s)	215, 218, 293, 296, 710, 1097
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	3 cut(s)	90, 822, 1052
BshFI	GGCC	5 cut(s)	68, 449, 586, 857, 960
BshNI	GGYRCC	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	7 cut(s)	28, 75, 88, 127, 142, 457, 895
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	5 cut(s)	52, 64, 456, 463, 1178
BsmAI	GTCTC	2 cut(s)	161, 384
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	2 cut(s)	238, 1156
BsnI	GGCC	5 cut(s)	68, 449, 586, 857, 960
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	4 cut(s)	115, 640, 913, 1208
BspACI	CCGC	5 cut(s)	46, 72, 85, 677, 1172
BspANI	GGCC	5 cut(s)	68, 449, 586, 857, 960
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	146, 408, 477, 1210
BspPI	GGATC	3 cut(s)	908, 1203, 1216
BspT107I	GGYRCC	1 cut(s)	406
BspTI	CTTAAG	1 cut(s)	1027
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	950
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	844, 1189
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	184, 225
BssMI	GATC	4 cut(s)	115, 640, 913, 1208
BssT1I	CCWWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	5 cut(s)	270, 282, 288, 687, 1074
BstAFI	CTTAAG	1 cut(s)	1027
BstAPI	GCANNNNNTGC	1 cut(s)	1021
BstC8I	GCNNGC	2 cut(s)	76, 1176
BstDEI	CTNAG	2 cut(s)	32, 590
BstF5I	GGATG	2 cut(s)	214, 1167
BstKTI	GATC	4 cut(s)	118, 643, 916, 1211
BstMAI	GTCTC	2 cut(s)	161, 384
BstMBI	GATC	4 cut(s)	115, 640, 913, 1208
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 583, 1021
BstNSI	RCATGY	1 cut(s)	1178
BstSCI	CCNGG	4 cut(s)	26, 141, 456, 894
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	3 cut(s)	90, 822, 1052
BstV2I	GAAGAC	2 cut(s)	270, 1107
BstX2I	RGATCY	2 cut(s)	913, 1208
BstYI	RGATCY	2 cut(s)	913, 1208
BsuRI	GGCC	5 cut(s)	68, 449, 586, 857, 960
BtsCI	GGATG	2 cut(s)	214, 1167
BtsIMutI	CAGTG	1 cut(s)	837
Cac8I	GCNNGC	2 cut(s)	76, 1176
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	5 cut(s)	55, 124, 145, 447, 475
CpoI	CGGWCCG	1 cut(s)	124
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	1182
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CspI	CGGWCCG	1 cut(s)	124
CviAII	CATG	1 cut(s)	1175
CviQI	GTAC	1 cut(s)	1182
DdeI	CTNAG	2 cut(s)	32, 590
DpnI	GATC	4 cut(s)	117, 642, 915, 1210
DpnII	GATC	4 cut(s)	115, 640, 913, 1208
EaeI	YGGCCR	3 cut(s)	66, 584, 855
Eam1104I	CTCTTC	5 cut(s)	270, 282, 288, 687, 1074
EarI	CTCTTC	5 cut(s)	270, 282, 288, 687, 1074
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	4 cut(s)	55, 124, 145, 475
Eco57I	CTGAAG	3 cut(s)	675, 1098, 1101
Eco88I	CYCGRG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	1 cut(s)	1178
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	1 cut(s)	1174
FauI	CCCGC	1 cut(s)	1179
FbaI	TGATCA	1 cut(s)	640
FblI	GTMKAC	2 cut(s)	721, 749
Fnu4HI	GCNGC	3 cut(s)	79, 811, 1041
FokI	GGATG	2 cut(s)	221, 1154
Fsp4HI	GCNGC	3 cut(s)	79, 811, 1041
FspBI	CTAG	1 cut(s)	59
GluI	GCNGC	3 cut(s)	79, 811, 1041
GsuI	CTGGAG	3 cut(s)	804, 861, 1029
HaeIII	GGCC	5 cut(s)	68, 449, 586, 857, 960
HapII	CCGG	7 cut(s)	28, 75, 88, 127, 142, 457, 895
HgaI	GACGC	1 cut(s)	70
Hin1II	CATG	1 cut(s)	1178
HinfI	GANTC	4 cut(s)	11, 221, 509, 947
HpaII	CCGG	7 cut(s)	28, 75, 88, 127, 142, 457, 895
HphI	GGTGA	2 cut(s)	230, 1106
Hpy166II	GTNNAC	3 cut(s)	722, 750, 837
Hpy188III	TCNNGA	8 cut(s)	22, 166, 392, 436, 772, 821, 871, 1046
Hpy8I	GTNNAC	3 cut(s)	722, 750, 837
Hpy99I	CGWCG	2 cut(s)	251, 254
HpyAV	CCTTC	4 cut(s)	292, 650, 738, 1085
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	2 cut(s)	252, 969
HpyCH4V	TGCA	6 cut(s)	236, 472, 810, 910, 1143, 1156
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 583, 1021
HpyF3I	CTNAG	2 cut(s)	32, 590
HpySE526I	ACGT	2 cut(s)	252, 969
Hsp92II	CATG	1 cut(s)	1178
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	4 cut(s)	115, 640, 913, 1208
LmnI	GCTCC	1 cut(s)	1048
Lsp1109I	GCAGC	3 cut(s)	90, 822, 1052
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	2 cut(s)	252, 969
MalI	GATC	4 cut(s)	117, 642, 915, 1210
MboI	GATC	4 cut(s)	115, 640, 913, 1208
MflI	RGATCY	2 cut(s)	913, 1208
MhlI	GDGCHC	1 cut(s)	411
MlsI	TGGCCA	2 cut(s)	586, 857
MluCI	AATT	6 cut(s)	395, 441, 535, 803, 904, 1106
MluNI	TGGCCA	2 cut(s)	586, 857
MlyI	GAGTC	2 cut(s)	5, 956
Mox20I	TGGCCA	2 cut(s)	586, 857
MroNI	GCCGGC	1 cut(s)	74
MscI	TGGCCA	2 cut(s)	586, 857
MseI	TTAA	6 cut(s)	255, 534, 543, 708, 1028, 1190
MslI	CAYNNNNRTG	1 cut(s)	842
Msp20I	TGGCCA	2 cut(s)	586, 857
MspCI	CTTAAG	1 cut(s)	1027
MspI	CCGG	7 cut(s)	28, 75, 88, 127, 142, 457, 895
MspR9I	CCNGG	4 cut(s)	28, 143, 458, 896
Mva1269I	GAATGC	2 cut(s)	238, 1156
MwoI	GCNNNNNNNGC	3 cut(s)	84, 583, 1021
NaeI	GCCGGC	1 cut(s)	76
NciI	CCSGG	4 cut(s)	28, 143, 458, 896
NdeII	GATC	4 cut(s)	115, 640, 913, 1208
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	1178
NlaIV	GGNNCC	4 cut(s)	146, 408, 477, 1210
NspI	RCATGY	1 cut(s)	1178
OliI	CACNNNNGTG	1 cut(s)	842
PaeI	GCATGC	1 cut(s)	1178
PaeR7I	CTCGAG	1 cut(s)	164
PctI	GAATGC	2 cut(s)	238, 1156
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	221, 509
PfoI	TCCNGGA	3 cut(s)	141, 456, 894
PkrI	GCNGC	3 cut(s)	80, 812, 1042
PleI	GAGTC	2 cut(s)	5, 955
PpsI	GAGTC	2 cut(s)	5, 955
PpuMI	RGGWCCY	1 cut(s)	475
PshBI	ATTAAT	2 cut(s)	543, 1190
Psp5II	RGGWCCY	1 cut(s)	475
PspN4I	GGNNCC	4 cut(s)	146, 408, 477, 1210
PspPI	GGNCC	5 cut(s)	55, 124, 145, 447, 475
PspPPI	RGGWCCY	1 cut(s)	475
PsuI	RGATCY	2 cut(s)	913, 1208
RsaI	GTAC	1 cut(s)	1183
RsaNI	GTAC	1 cut(s)	1182
RseI	CAYNNNNRTG	1 cut(s)	842
Rsr2I	CGGWCCG	1 cut(s)	124
RsrII	CGGWCCG	1 cut(s)	124
SaqAI	TTAA	6 cut(s)	255, 534, 543, 708, 1028, 1190
SatI	GCNGC	3 cut(s)	79, 811, 1041
Sau3AI	GATC	4 cut(s)	115, 640, 913, 1208
Sau96I	GGNCC	5 cut(s)	55, 124, 145, 447, 475
SchI	GAGTC	2 cut(s)	5, 956
ScrFI	CCNGG	4 cut(s)	28, 143, 458, 896
SduI	GDGCHC	1 cut(s)	411
Sfr274I	CTCGAG	1 cut(s)	164
SinI	GGWCC	4 cut(s)	55, 124, 145, 475
SlaI	CTCGAG	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	842
SmlI	CTYRAG	2 cut(s)	164, 1027
SmoI	CTYRAG	2 cut(s)	164, 1027
SphI	GCATGC	1 cut(s)	1178
Sse9I	AATT	6 cut(s)	395, 441, 535, 803, 904, 1106
SsiI	CCGC	5 cut(s)	46, 72, 85, 677, 1172
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	4 cut(s)	26, 141, 456, 894
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	2 cut(s)	255, 972
TaqI	TCGA	3 cut(s)	96, 153, 165
TasI	AATT	6 cut(s)	395, 441, 535, 803, 904, 1106
TfiI	GAWTC	2 cut(s)	221, 509
Tru1I	TTAA	6 cut(s)	255, 534, 543, 708, 1028, 1190
Tru9I	TTAA	6 cut(s)	255, 534, 543, 708, 1028, 1190
TscAI	CASTG	1 cut(s)	844
TseI	GCWGC	3 cut(s)	78, 810, 1040
TspDTI	ATGAA	5 cut(s)	522, 572, 618, 1010, 1149
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	1 cut(s)	844
Vha464I	CTTAAG	1 cut(s)	1027
VpaK11BI	GGWCC	4 cut(s)	55, 124, 145, 475
VspI	ATTAAT	2 cut(s)	543, 1190
XapI	RAATTY	3 cut(s)	395, 441, 1106
XceI	RCATGY	1 cut(s)	1178
XhoI	CTCGAG	1 cut(s)	164
XmiI	GTMKAC	2 cut(s)	721, 749
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.