Upstream activation factor subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G49520 AT3G19080 AT3G19080 AT3G19080 AT3G19080 |
| fragaria_vesca | FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 |
| malus_domestica | MD10G1089200.v1.1 |
| prunus_persica | Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 |
| pyrus_communis | pycom05g06780 pycom10g07210 |
| rosa_chinensis | RchiOBHm_Chr6g0259201 |
| rosa_laevigata | RLG00000014549 |
| rosa_multiflora | Rmu_ssc0000050.1_g000095 |
| rosa_roxburghii | Rroxscaffold_7G00206510 |
| rosa_rugosa | Rorug05G0585700 Rorug05G0585800 Rorug05G0585900 |
| rosa_samantha | Rh6AG102700 Rh6BG095000 Rh6BG095100 Rh6CG092000 Rh6DG086000 |
| rosa_wichuraiana | Rw6G008870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 574 |
| Acc36I | ACCTGC | 2 cut(s) | 539, 578 |
| AciI | CCGC | 1 cut(s) | 132 |
| AcsI | RAATTY | 3 cut(s) | 310, 520, 542 |
| AgsI | TTSAA | 4 cut(s) | 315, 367, 525, 547 |
| Alw26I | GTCTC | 1 cut(s) | 28 |
| ApeKI | GCWGC | 3 cut(s) | 5, 204, 414 |
| ApoI | RAATTY | 3 cut(s) | 310, 520, 542 |
| AsuHPI | GGTGA | 1 cut(s) | 574 |
| BbsI | GAAGAC | 1 cut(s) | 572 |
| BbvI | GCAGC | 3 cut(s) | 17, 216, 426 |
| BccI | CCATC | 1 cut(s) | 331 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 393, 427 |
| BclI | TGATCA | 4 cut(s) | 211, 259, 421, 469 |
| BcoDI | GTCTC | 1 cut(s) | 28 |
| BfaI | CTAG | 1 cut(s) | 583 |
| BfuAI | ACCTGC | 2 cut(s) | 539, 578 |
| BisI | GCNGC | 3 cut(s) | 6, 205, 415 |
| BlsI | GCNGC | 3 cut(s) | 7, 206, 416 |
| BmsI | GCATC | 2 cut(s) | 173, 383 |
| BpiI | GAAGAC | 1 cut(s) | 572 |
| Bse1I | ACTGG | 1 cut(s) | 19 |
| BseMII | CTCAG | 4 cut(s) | 127, 182, 392, 548 |
| BseNI | ACTGG | 1 cut(s) | 19 |
| BseXI | GCAGC | 3 cut(s) | 17, 216, 426 |
| BsgI | GTGCAG | 2 cut(s) | 223, 433 |
| BsmAI | GTCTC | 1 cut(s) | 28 |
| Bsp143I | GATC | 7 cut(s) | 61, 180, 211, 259, 390, 421, 469 |
| BspACI | CCGC | 1 cut(s) | 132 |
| BspCNI | CTCAG | 4 cut(s) | 126, 181, 391, 549 |
| BspMI | ACCTGC | 2 cut(s) | 539, 578 |
| BsrI | ACTGG | 1 cut(s) | 19 |
| BssMI | GATC | 7 cut(s) | 61, 180, 211, 259, 390, 421, 469 |
| Bst4CI | ACNGT | 2 cut(s) | 239, 449 |
| BstDEI | CTNAG | 4 cut(s) | 113, 168, 378, 557 |
| BstKTI | GATC | 7 cut(s) | 64, 183, 214, 262, 393, 424, 472 |
| BstMAI | GTCTC | 1 cut(s) | 28 |
| BstMBI | GATC | 7 cut(s) | 61, 180, 211, 259, 390, 421, 469 |
| BstV1I | GCAGC | 3 cut(s) | 17, 216, 426 |
| BstV2I | GAAGAC | 1 cut(s) | 572 |
| BtsI | GCAGTG | 2 cut(s) | 214, 424 |
| BtsIMutI | CAGTG | 2 cut(s) | 214, 424 |
| BveI | ACCTGC | 2 cut(s) | 539, 578 |
| CviAII | CATG | 2 cut(s) | 277, 487 |
| CviJI | RGCY | 5 cut(s) | 172, 234, 293, 382, 503 |
| CviKI_1 | RGCY | 5 cut(s) | 172, 234, 293, 382, 503 |
| DdeI | CTNAG | 4 cut(s) | 113, 168, 378, 557 |
| DpnI | GATC | 7 cut(s) | 63, 182, 213, 261, 392, 423, 471 |
| DpnII | GATC | 7 cut(s) | 61, 180, 211, 259, 390, 421, 469 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 574 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 574 |
| EcoRI | GAATTC | 1 cut(s) | 542 |
| FaeI | CATG | 2 cut(s) | 280, 490 |
| FatI | CATG | 2 cut(s) | 276, 486 |
| FbaI | TGATCA | 4 cut(s) | 211, 259, 421, 469 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 205, 415 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 205, 415 |
| FspBI | CTAG | 1 cut(s) | 583 |
| GluI | GCNGC | 3 cut(s) | 6, 205, 415 |
| Hin1II | CATG | 2 cut(s) | 280, 490 |
| HinfI | GANTC | 2 cut(s) | 269, 575 |
| HphI | GGTGA | 1 cut(s) | 574 |
| Hpy188I | TCNGA | 1 cut(s) | 116 |
| Hpy188III | TCNNGA | 4 cut(s) | 65, 125, 158, 357 |
| HpyAV | CCTTC | 1 cut(s) | 354 |
| HpyCH4III | ACNGT | 2 cut(s) | 239, 449 |
| HpyCH4V | TGCA | 2 cut(s) | 204, 414 |
| HpyF3I | CTNAG | 4 cut(s) | 113, 168, 378, 557 |
| Hsp92II | CATG | 2 cut(s) | 280, 490 |
| Ksp22I | TGATCA | 4 cut(s) | 211, 259, 421, 469 |
| Kzo9I | GATC | 7 cut(s) | 61, 180, 211, 259, 390, 421, 469 |
| LpnPI | CCDG | 2 cut(s) | 65, 544 |
| Lsp1109I | GCAGC | 3 cut(s) | 17, 216, 426 |
| LweI | GCATC | 2 cut(s) | 173, 383 |
| MaeI | CTAG | 1 cut(s) | 583 |
| MaeIII | GTNAC | 2 cut(s) | 239, 449 |
| MalI | GATC | 7 cut(s) | 63, 182, 213, 261, 392, 423, 471 |
| MboI | GATC | 7 cut(s) | 61, 180, 211, 259, 390, 421, 469 |
| MboII | GAAGA | 2 cut(s) | 71, 577 |
| MluCI | AATT | 6 cut(s) | 90, 249, 310, 459, 520, 542 |
| MlyI | GAGTC | 1 cut(s) | 584 |
| MnlI | CCTC | 4 cut(s) | 283, 493, 522, 552 |
| NdeII | GATC | 7 cut(s) | 61, 180, 211, 259, 390, 421, 469 |
| NlaIII | CATG | 2 cut(s) | 280, 490 |
| NmuCI | GTSAC | 2 cut(s) | 239, 449 |
| PfeI | GAWTC | 1 cut(s) | 269 |
| PkrI | GCNGC | 3 cut(s) | 7, 206, 416 |
| PleI | GAGTC | 1 cut(s) | 583 |
| PpsI | GAGTC | 1 cut(s) | 583 |
| SatI | GCNGC | 3 cut(s) | 6, 205, 415 |
| Sau3AI | GATC | 7 cut(s) | 61, 180, 211, 259, 390, 421, 469 |
| SchI | GAGTC | 1 cut(s) | 584 |
| SetI | ASST | 4 cut(s) | 144, 365, 533, 572 |
| SfaNI | GCATC | 2 cut(s) | 173, 383 |
| Sse9I | AATT | 6 cut(s) | 90, 249, 310, 459, 520, 542 |
| SsiI | CCGC | 1 cut(s) | 132 |
| SspI | AATATT | 2 cut(s) | 28, 319 |
| SspMI | CTAG | 1 cut(s) | 583 |
| TaaI | ACNGT | 2 cut(s) | 239, 449 |
| TaqI | TCGA | 3 cut(s) | 183, 335, 393 |
| TasI | AATT | 6 cut(s) | 90, 249, 310, 459, 520, 542 |
| TfiI | GAWTC | 1 cut(s) | 269 |
| TscAI | CASTG | 2 cut(s) | 214, 424 |
| TseFI | GTSAC | 2 cut(s) | 239, 449 |
| TseI | GCWGC | 3 cut(s) | 5, 204, 414 |
| Tsp45I | GTSAC | 2 cut(s) | 239, 449 |
| TspDTI | ATGAA | 1 cut(s) | 555 |
| TspRI | CASTG | 2 cut(s) | 214, 424 |
| XapI | RAATTY | 3 cut(s) | 310, 520, 542 |
| XspI | CTAG | 1 cut(s) | 583 |