Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003341

Physical Location & Seq

Genomic Coordinates Reverse (-)

78292481 .. 78293692

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0585800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGGATTTTTCCAGCAATGACTTCCACGGTGCAATTTCAACGTCATTCTTCCAACAAGCTTGGAATTTGACTAGTTTCAATGTTAGCAACAACACCTTTTCTGGTTCGATCCCATCCTCTATTTGTCTTCGTTTTTCTTCCTTGTTACGACGATTGGATTTTTCCTTCAATAATTTCAATGGTAGTATTCCTCGTGGACTCGGGAAGTGTTCCAAACTGCAAATTTTTCGTGCTGGTTACAATTACCTCTCAGGATTACTTCCAGAAGAAATCTATAGTGCTACTGCACTTGAAGACATTTCACTAGCTCGGAATTCATTATCTGGAGCCATTAATGATGAAATTGTCAACCTAACTAACCTCACAATCCTTGACCTCTACTATAACAAATTTACTGCCATCCTCCCTCTCCATATTGGGAAGCTCTCCAAGTTAAAAGACATACTCTTAGATTTCAACTTTCTTGAAAGTTCATTTCCCCTATCTTTGATGAATTGCACGAACCTTGTAGAACTTCGTATGGGATCCAACAACTTTGAAGGCGATATTTCCATGCTCAATTTCTCCAGGCTTGGTCAACTTAGTAAACTTGACATGCGAAAAAATAACTTCTCTGGTATCTTGCCAAGAAGCCTATACTCATGCAAGTCCTTGAAAGCAATTCGACTGAGCTATAATAATCTAGAGGTTCAAATACACCCTGAAATTCTTTCCTTGAAATACTTGTCCTTCCTCTCACTTGGTTGGAACAAACGTTTGACCAATGTGATAGGGGCAATGAAGATACTGATGGGTTGCAAACGTCTCGTAGTCCTTTCCTTGGCATCTAGTTTTTTAGGTGACAAACTGCCGAATGATGTTGAAATGGTGGATTTTAATGGATTTCAAAATCTTCGAGTTTTAGATTTGAGTTCATGTAACCTTGGTGGTAAAATTCCTTCATGGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

317

Amino Acids

35.44

Weight (kDa)

8.98

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	169 - 229	3.4e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49520 AT3G19080 AT3G19080 AT3G19080 AT3G19080
fragaria_vesca	FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890
malus_domestica	MD10G1089200.v1.1
prunus_persica	Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1
pyrus_communis	pycom05g06780 pycom10g07210
rosa_chinensis	RchiOBHm_Chr6g0259201
rosa_laevigata	RLG00000014549
rosa_multiflora	Rmu_ssc0000050.1_g000095
rosa_roxburghii	Rroxscaffold_7G00206510
rosa_rugosa	Rorug05G0585700 Rorug05G0585800 Rorug05G0585900
rosa_samantha	Rh6AG102700 Rh6BG095000 Rh6BG095100 Rh6CG092000 Rh6DG086000
rosa_wichuraiana	Rw6G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclI	AACGTT	1 cut(s)	757
AclWI	GGATC	3 cut(s)	106, 522, 535
AcsI	RAATTY	6 cut(s)	67, 225, 316, 392, 708, 936
AfiI	CCNNNNNNNGG	1 cut(s)	823
AhlI	ACTAGT	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	569
AluBI	AGCT	4 cut(s)	62, 311, 427, 675
AluI	AGCT	4 cut(s)	62, 311, 427, 675
Alw26I	GTCTC	1 cut(s)	812
AlwI	GGATC	3 cut(s)	106, 522, 535
Ama87I	CYCGRG	1 cut(s)	203
ApoI	RAATTY	6 cut(s)	67, 225, 316, 392, 708, 936
AseI	ATTAAT	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	854
AvaI	CYCGRG	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	527
BarI	GAAGNNNNNNTAC	1 cut(s)	925
BauI	CACGAG	1 cut(s)	195
BbsI	GAAGAC	2 cut(s)	122, 303
BccI	CCATC	3 cut(s)	124, 410, 787
BcgI	CGANNNNNNTGC	4 cut(s)	212, 246, 790, 824
BciT130I	CCWGG	1 cut(s)	571
BcoDI	GTCTC	1 cut(s)	812
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	4 cut(s)	75, 308, 686, 831
BfmI	CTRYAG	2 cut(s)	277, 950
Bme1390I	CCNGG	1 cut(s)	571
BmeT110I	CYCGRG	1 cut(s)	203
BmiI	GGNNCC	2 cut(s)	331, 529
BmrFI	CCNGG	1 cut(s)	571
BmsI	GCATC	1 cut(s)	836
BpiI	GAAGAC	2 cut(s)	122, 303
BpmI	CTGGAG	2 cut(s)	348, 553
BsaJI	CCNNGG	3 cut(s)	28, 822, 925
Bsc4I	CCNNNNNNNGG	1 cut(s)	823
Bse3DI	GCAATG	2 cut(s)	25, 786
BseBI	CCWGG	1 cut(s)	571
BseDI	CCNNGG	3 cut(s)	28, 822, 925
BseGI	GGATG	2 cut(s)	116, 402
BseLI	CCNNNNNNNGG	1 cut(s)	823
BseMI	GCAATG	2 cut(s)	25, 786
BseMII	CTCAG	2 cut(s)	267, 662
BsgI	GTGCAG	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	823
BsmAI	GTCTC	1 cut(s)	812
BsmBI	CGTCTC	1 cut(s)	812
BsoBI	CYCGRG	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	111, 527
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	266, 663
BspLI	GGNNCC	2 cut(s)	331, 529
BspPI	GGATC	3 cut(s)	106, 522, 535
BsrDI	GCAATG	2 cut(s)	25, 786
BssECI	CCNNGG	3 cut(s)	28, 822, 925
BssMI	GATC	2 cut(s)	111, 527
BssSI	CACGAG	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	822, 925
Bst2BI	CACGAG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	1 cut(s)	32
BstDEI	CTNAG	4 cut(s)	253, 451, 584, 671
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	116, 402
BstKTI	GATC	2 cut(s)	114, 530
BstMAI	GTCTC	1 cut(s)	812
BstMBI	GATC	2 cut(s)	111, 527
BstNI	CCWGG	1 cut(s)	571
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	1 cut(s)	569
BstSFI	CTRYAG	2 cut(s)	277, 950
BstV2I	GAAGAC	2 cut(s)	122, 303
BstX2I	RGATCY	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	527
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	116, 402
CviAII	CATG	5 cut(s)	556, 598, 645, 918, 945
CviJI	RGCY	8 cut(s)	62, 311, 332, 427, 574, 636, 675, 949
CviKI_1	RGCY	8 cut(s)	62, 311, 332, 427, 574, 636, 675, 949
DdeI	CTNAG	4 cut(s)	253, 451, 584, 671
DpnI	GATC	2 cut(s)	113, 529
DpnII	GATC	2 cut(s)	111, 527
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	822, 925
Eco88I	CYCGRG	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	569
EcoT14I	CCWWGG	2 cut(s)	822, 925
ErhI	CCWWGG	2 cut(s)	822, 925
Esp3I	CGTCTC	1 cut(s)	812
FaeI	CATG	5 cut(s)	559, 601, 648, 921, 948
FatI	CATG	5 cut(s)	555, 597, 644, 917, 944
FokI	GGATG	2 cut(s)	103, 389
FspBI	CTAG	4 cut(s)	75, 308, 686, 831
GsuI	CTGGAG	2 cut(s)	348, 553
Hin1II	CATG	5 cut(s)	559, 601, 648, 921, 948
HincII	GTYRAC	2 cut(s)	352, 581
HindII	GTYRAC	2 cut(s)	352, 581
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	1 cut(s)	201
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	4 cut(s)	200, 352, 581, 590
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	6 cut(s)	205, 255, 266, 327, 467, 686
Hpy8I	GTNNAC	4 cut(s)	200, 352, 581, 590
Hpy99I	CGWCG	1 cut(s)	156
HpyAV	CCTTC	4 cut(s)	178, 536, 742, 951
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	3 cut(s)	44, 757, 805
HpyCH4V	TGCA	6 cut(s)	35, 223, 290, 501, 648, 801
HpyF3I	CTNAG	4 cut(s)	253, 451, 584, 671
HpySE526I	ACGT	3 cut(s)	44, 757, 805
Hsp92II	CATG	5 cut(s)	559, 601, 648, 921, 948
Kzo9I	GATC	2 cut(s)	111, 527
LmnI	GCTCC	1 cut(s)	329
LweI	GCATC	1 cut(s)	836
MaeI	CTAG	4 cut(s)	75, 308, 686, 831
MaeII	ACGT	3 cut(s)	44, 757, 805
MaeIII	GTNAC	4 cut(s)	147, 239, 842, 920
MalI	GATC	2 cut(s)	113, 529
MboI	GATC	2 cut(s)	111, 527
MboII	GAAGA	7 cut(s)	43, 122, 132, 281, 308, 796, 887
MflI	RGATCY	1 cut(s)	527
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	3 cut(s)	79, 555, 728
MnlI	CCTC	9 cut(s)	130, 204, 260, 374, 389, 416, 420, 682, 746
MseI	TTAA	3 cut(s)	336, 437, 879
MspR9I	CCNGG	1 cut(s)	571
MvaI	CCWGG	1 cut(s)	571
NdeII	GATC	2 cut(s)	111, 527
NlaIII	CATG	5 cut(s)	559, 601, 648, 921, 948
NlaIV	GGNNCC	2 cut(s)	331, 529
NmuCI	GTSAC	1 cut(s)	842
NspI	RCATGY	1 cut(s)	601
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PshBI	ATTAAT	1 cut(s)	336
Psp1406I	AACGTT	1 cut(s)	757
Psp6I	CCWGG	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	569
PspN4I	GGNNCC	2 cut(s)	331, 529
PsuI	RGATCY	1 cut(s)	527
SaqAI	TTAA	3 cut(s)	336, 437, 879
Sau3AI	GATC	2 cut(s)	111, 527
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	1 cut(s)	571
SfaNI	GCATC	1 cut(s)	836
SfcI	CTRYAG	2 cut(s)	277, 950
SpeI	ACTAGT	1 cut(s)	74
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	4 cut(s)	75, 308, 686, 831
StyD4I	CCNGG	1 cut(s)	569
StyI	CCWWGG	2 cut(s)	822, 925
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	3 cut(s)	47, 760, 808
TaqI	TCGA	3 cut(s)	110, 667, 898
Tru1I	TTAA	3 cut(s)	336, 437, 879
Tru9I	TTAA	3 cut(s)	336, 437, 879
TseFI	GTSAC	1 cut(s)	842
Tsp45I	GTSAC	1 cut(s)	842
TspDTI	ATGAA	7 cut(s)	309, 357, 465, 509, 797, 906, 933
VspI	ATTAAT	1 cut(s)	336
XapI	RAATTY	6 cut(s)	67, 225, 316, 392, 708, 936
XbaI	TCTAGA	1 cut(s)	685
XceI	RCATGY	1 cut(s)	601
XspI	CTAG	4 cut(s)	75, 308, 686, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.