Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003341

Physical Location & Seq

Genomic Coordinates Reverse (-)

15226579 .. 15230237

Gene Structure 3659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG102700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCCGCTAAACAGGGAAGATGGTATGTCCAGAATTCTCTACCCCAACCTTCTGGTGACATCTATATGTCTGCTAAAGTGGATAAAGAAGTCAAGAAAAGGGGAGGTGGCTTTACCAAGTTATCAAGCCTTTCTCCAGAACTTCAAAAAATCACTGGAGCGTCAGAATTGGCTAGAACAGAGGTTGTCAAGAAGCTTTGGAACTATATCCGGGAGAACAATTTGCAAGATCCAAATAATAGGAGAATTATAATATGTGATGAGCTGTTCCGCACCCTTTTTGATGTCGATTCTATCGATATGTTTCAAATGAATAAAGCTCTGTCCAAGCACATATTGCCTTTAAATCCAGAAGCAGCTCTAGACAACACTTCACAAACAGAGAAGCAGTCTGAATATGAGCAAGAAGATTCAGATGAAGCTGACCACGACGAAAAACGGCAGAAGAAGGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

152

Amino Acids

17.43

Weight (kDa)

5.52

Isoelectric Point (pI)

69.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	43 - 112	1e-30	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49520 AT3G19080 AT3G19080 AT3G19080 AT3G19080
fragaria_vesca	FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890
malus_domestica	MD10G1089200.v1.1
prunus_persica	Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1
pyrus_communis	pycom05g06780 pycom10g07210
rosa_chinensis	RchiOBHm_Chr6g0259201
rosa_laevigata	RLG00000014549
rosa_multiflora	Rmu_ssc0000050.1_g000095
rosa_roxburghii	Rroxscaffold_7G00206510
rosa_rugosa	Rorug05G0585700 Rorug05G0585800 Rorug05G0585900
rosa_samantha	Rh6AG102700 Rh6BG095000 Rh6BG095100 Rh6CG092000 Rh6DG086000
rosa_wichuraiana	Rw6G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AciI	CCGC	2 cut(s)	6, 271
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	146, 308
AluBI	AGCT	5 cut(s)	196, 265, 320, 359, 422
AluI	AGCT	5 cut(s)	196, 265, 320, 359, 422
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	1 cut(s)	15
BceAI	ACGGC	1 cut(s)	455
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	2 cut(s)	174, 362
BisI	GCNGC	2 cut(s)	6, 357
BlsI	GCNGC	2 cut(s)	7, 358
Bme1390I	CCNGG	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	212
BpmI	CTGGAG	2 cut(s)	120, 177
BpuMI	CCSGG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	160
BseCI	ATCGAT	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	368
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	2 cut(s)	6, 271
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	297
BspPI	GGATC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	160
BssMI	GATC	1 cut(s)	229
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	229
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	229
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	153
ClaI	ATCGAT	1 cut(s)	297
CseI	GACGC	1 cut(s)	150
CviJI	RGCY	9 cut(s)	5, 111, 129, 173, 196, 265, 320, 359, 422
CviKI_1	RGCY	9 cut(s)	5, 111, 129, 173, 196, 265, 320, 359, 422
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
DraI	TTTAAA	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	3
EcoRI	GAATTC	1 cut(s)	34
FaiI	YATR	9 cut(s)	27, 66, 68, 207, 251, 256, 302, 335, 399
Fnu4HI	GCNGC	2 cut(s)	6, 357
Fsp4HI	GCNGC	2 cut(s)	6, 357
FspBI	CTAG	2 cut(s)	174, 362
GluI	GCNGC	2 cut(s)	6, 357
GsuI	CTGGAG	2 cut(s)	120, 177
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	211
HgaI	GACGC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	2 cut(s)	290, 410
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	1 cut(s)	68
Hpy188I	TCNGA	3 cut(s)	166, 394, 415
Hpy188III	TCNNGA	6 cut(s)	31, 94, 137, 190, 350, 362
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	2 cut(s)	60, 442
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	6 cut(s)	39, 44, 141, 150, 224, 363
Lsp1109I	GCAGC	1 cut(s)	368
MaeI	CTAG	2 cut(s)	174, 362
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	3 cut(s)	30, 419, 457
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	4 cut(s)	34, 167, 220, 246
MnlI	CCTC	2 cut(s)	98, 175
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	65
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	337
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	290, 410
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	7, 358
PsiI	TTATAA	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	2 cut(s)	6, 357
Sau3AI	GATC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	8 cut(s)	52, 109, 186, 198, 267, 322, 361, 424
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	4 cut(s)	34, 167, 220, 246
SsiI	CCGC	2 cut(s)	6, 271
SspMI	CTAG	2 cut(s)	174, 362
StyD4I	CCNGG	1 cut(s)	210
TaqI	TCGA	2 cut(s)	288, 297
TasI	AATT	4 cut(s)	34, 167, 220, 246
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	290, 410
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	326, 432
TspRI	CASTG	1 cut(s)	160
XapI	RAATTY	1 cut(s)	34
XbaI	TCTAGA	1 cut(s)	361
XspI	CTAG	2 cut(s)	174, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.