Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000050.1

Orthogroup ID

OG0003341

Physical Location & Seq

Genomic Coordinates Forward (+)

431109 .. 435046

Gene Structure 3938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000050.1_g000095.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggccagaccagaggtagtgaagaaactttgggcttatatccgggaaaaggatttgcaggacccaaagaataggcggaacataagatgtgatgaatcactacatgccgtttttcatgttaagtctattgatatgtttaaaatgaataaagtcctgtccaagcatatatggccgctaaacagggaagatgaacctttaaagaaaatgaagaaaggggaagacagtgatcactctatctccgaaggagatgtaagtaatgtagaggaacaagaggttgaagaagaagaagaagaagaagtgaagaaagaaaaaggcagtaatcgaaaacagaccaagaaacggaggtctgctaaagtggataaagaagtcaagaaaaggggaggtggctttaccaagttatcaagcctttctccagaacttcaaaaaatcactggagcgtcagaattggctagaacagaggttgtcaagaagctttggaactatatccgggagaacaatttgcaagatccaaataataggagaattataatatgtgatgagctgttccgcaccctttttgatgtcgattctatcgatatgtttcaaatgaataaagctctgtccaagcacatattgcctttaaatcaagaagcggctctagacaacacttcacaaacagagaagcagtctgaatatgagcaagaagattcagatgaagctgaccacgacgaaaaacggcagaagaagggagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

244

Amino Acids

28.58

Weight (kDa)

6.16

Isoelectric Point (pI)

70.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49520 AT3G19080 AT3G19080 AT3G19080 AT3G19080
fragaria_vesca	FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890
malus_domestica	MD10G1089200.v1.1
prunus_persica	Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1
pyrus_communis	pycom05g06780 pycom10g07210
rosa_chinensis	RchiOBHm_Chr6g0259201
rosa_laevigata	RLG00000014549
rosa_multiflora	Rmu_ssc0000050.1_g000095
rosa_roxburghii	Rroxscaffold_7G00206510
rosa_rugosa	Rorug05G0585700 Rorug05G0585800 Rorug05G0585900
rosa_samantha	Rh6AG102700 Rh6BG095000 Rh6BG095100 Rh6CG092000 Rh6DG086000
rosa_wichuraiana	Rw6G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	527
AciI	CCGC	4 cut(s)	76, 173, 547, 632
AclWI	GGATC	1 cut(s)	500
AcoI	YGGCCR	2 cut(s)	3, 170
AfiI	CCNNNNNNNGG	2 cut(s)	49, 339
AgsI	TTSAA	3 cut(s)	278, 422, 584
AluBI	AGCT	4 cut(s)	472, 541, 596, 698
AluI	AGCT	4 cut(s)	472, 541, 596, 698
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	1 cut(s)	500
AoxI	GGCC	2 cut(s)	3, 170
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	2 cut(s)	44, 488
AvaII	GGWCC	1 cut(s)	61
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	225
BceAI	ACGGC	2 cut(s)	92, 731
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	2 cut(s)	44, 488
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	2 cut(s)	450, 638
BisI	GCNGC	2 cut(s)	173, 633
BlsI	GCNGC	2 cut(s)	174, 634
Bme1390I	CCNGG	2 cut(s)	44, 488
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	2 cut(s)	44, 488
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	2 cut(s)	396, 453
BpuMI	CCSGG	2 cut(s)	44, 488
Bsa29I	ATCGAT	1 cut(s)	573
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 339
Bse1I	ACTGG	1 cut(s)	436
BseCI	ATCGAT	1 cut(s)	573
BseLI	CCNNNNNNNGG	2 cut(s)	49, 339
BseNI	ACTGG	1 cut(s)	436
BshFI	GGCC	2 cut(s)	5, 172
BshVI	ATCGAT	1 cut(s)	573
BsiSI	CCGG	2 cut(s)	43, 487
BslI	CCNNNNNNNGG	2 cut(s)	49, 339
BsmAI	GTCTC	1 cut(s)	723
BsnI	GGCC	2 cut(s)	5, 172
Bsp143I	GATC	2 cut(s)	226, 505
BspACI	CCGC	4 cut(s)	76, 173, 547, 632
BspANI	GGCC	2 cut(s)	5, 172
BspDI	ATCGAT	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	436
BssMI	GATC	2 cut(s)	226, 505
Bst4CI	ACNGT	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	613
BstKTI	GATC	2 cut(s)	229, 508
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	2 cut(s)	226, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 613
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	42, 486
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
Bsu15I	ATCGAT	1 cut(s)	573
BsuRI	GGCC	2 cut(s)	5, 172
BsuTUI	ATCGAT	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	229, 429
Cfr13I	GGNCC	1 cut(s)	61
ClaI	ATCGAT	1 cut(s)	573
CseI	GACGC	1 cut(s)	426
CviAII	CATG	2 cut(s)	104, 116
DpnI	GATC	2 cut(s)	228, 507
DpnII	GATC	2 cut(s)	226, 505
DraI	TTTAAA	3 cut(s)	139, 198, 621
EaeI	YGGCCR	2 cut(s)	3, 170
EciI	GGCGGA	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	61
FaeI	CATG	2 cut(s)	107, 119
FatI	CATG	2 cut(s)	103, 115
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	173, 633
Fsp4HI	GCNGC	2 cut(s)	173, 633
FspBI	CTAG	2 cut(s)	450, 638
GluI	GCNGC	2 cut(s)	173, 633
GsuI	CTGGAG	2 cut(s)	396, 453
HaeIII	GGCC	2 cut(s)	5, 172
HapII	CCGG	2 cut(s)	43, 487
HgaI	GACGC	1 cut(s)	426
Hin1II	CATG	2 cut(s)	107, 119
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	3 cut(s)	95, 566, 686
HpaII	CCGG	2 cut(s)	43, 487
Hpy188I	TCNGA	4 cut(s)	241, 442, 670, 691
Hpy188III	TCNNGA	5 cut(s)	370, 413, 466, 626, 638
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	2 cut(s)	236, 718
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	58, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 613
Hsp92II	CATG	2 cut(s)	107, 119
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	226, 505
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	9 cut(s)	19, 24, 44, 56, 166, 167, 417, 426, 500
MaeI	CTAG	2 cut(s)	450, 638
MalI	GATC	2 cut(s)	228, 507
MboI	GATC	2 cut(s)	226, 505
MflI	RGATCY	1 cut(s)	505
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	443, 496, 522
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	7, 256, 265, 336, 374, 451
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	120, 138, 197, 620
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	43, 487
MspR9I	CCNGG	2 cut(s)	44, 488
MwoI	GCNNNNNNNGC	2 cut(s)	169, 613
NciI	CCSGG	2 cut(s)	44, 488
NdeII	GATC	2 cut(s)	226, 505
NlaIII	CATG	2 cut(s)	107, 119
NlaIV	GGNNCC	1 cut(s)	63
NspI	RCATGY	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PfeI	GAWTC	3 cut(s)	95, 566, 686
PfoI	TCCNGGA	2 cut(s)	42, 486
PkrI	GCNGC	2 cut(s)	174, 634
PpuMI	RGGWCCY	1 cut(s)	61
PsiI	TTATAA	1 cut(s)	527
Psp5II	RGGWCCY	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	61
PspPPI	RGGWCCY	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	505
SaqAI	TTAA	4 cut(s)	120, 138, 197, 620
SatI	GCNGC	2 cut(s)	173, 633
Sau3AI	GATC	2 cut(s)	226, 505
Sau96I	GGNCC	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	44, 488
SinI	GGWCC	1 cut(s)	61
Sse9I	AATT	3 cut(s)	443, 496, 522
SsiI	CCGC	4 cut(s)	76, 173, 547, 632
SspMI	CTAG	2 cut(s)	450, 638
StyD4I	CCNGG	2 cut(s)	42, 486
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	3 cut(s)	322, 564, 573
TasI	AATT	3 cut(s)	443, 496, 522
TauI	GCSGC	2 cut(s)	175, 635
TfiI	GAWTC	3 cut(s)	95, 566, 686
Tru1I	TTAA	4 cut(s)	120, 138, 197, 620
Tru9I	TTAA	4 cut(s)	120, 138, 197, 620
TscAI	CASTG	2 cut(s)	229, 436
TspDTI	ATGAA	7 cut(s)	104, 108, 158, 204, 221, 602, 708
TspGWI	ACGGA	1 cut(s)	355
TspRI	CASTG	2 cut(s)	229, 436
VpaK11BI	GGWCC	1 cut(s)	61
XbaI	TCTAGA	1 cut(s)	637
XceI	RCATGY	1 cut(s)	107
XspI	CTAG	2 cut(s)	450, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.