FvH4_2g06890

Upstream activation factor subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
5688316 .. 5695656
7341 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06890.t10

Sequence Viewer

Length: 1167 bp
ATGGTATCTGAATCGGACCTCCTGACCCGCCTCCGCGAAATCCTCAGCTCCTCCGACCTCGACACAGCCACCGCCGGCAGCGTCCGCCGCGAGCTCGAGAAGCATTTCGGCGCCGATCTCTCCGACCGGAAAGCCTTTATCCGGGACCAAATCGACATTTACCTCGAGAGCCAGGTCGCCAATCACCAGGACGAAGACGACGACGAAGGAGCGGCGGCGGAGGAGGAGGAGGAGGTCGGTGAAGGCTCCGAGAATGCCGAGCAAAACGACGACGTTAAAGTGGAAGAAGACGATGAAGAAGAAGAGGAACCAGTACGCAAAGCTCGACGGAAAAAAGCACCCAAGAAGGTGGATAAAGGAGGTGCAAAACGAGGCGGCTTCAAAACAGTATACAGCCTGTCTCCACAACTTCAAGTAGTTGTTGGAGAGCCCGAAATGGCCAGACCAGAGGTAGTGAAGAAAATATGGGCTTATATCCGGGAAAAGGATTTGCAGGACCCAAAGAATAGGCGGAATATAATATGTGATGAAACACTACATGCTGTTTTCCATGTGAAGTCTATTGATATGTTTAAAATGAATAAAGTCCTGTCCAAACATATATGGCCACTGAACAGTCAGGATGGACCTGTAAAGAAAACAAAGAAAGAGGAAGACAGTGATCACTCTCTCTCTGAAGGAGATGTAAGTAATGTAGATGAGCAAGAGGTTGAAGAAGAAGAAGAAGATGTGGAGAAAGAAAAAGGCAGCAATTGTAAACAGACCAAGAAACGAAGGTCTGCCAAAGTGGATAAAGAAGTCAAGAAAAGGGGAGGTGGCTTTACCAAATTATCGAGCCTTTCTCCAGAACTTCAGAAATTCACTGGAGCGTCAGAATTGGCTAGAACAGAGGTTGTCAAGAGGCTTTGGAATTATATCCGGGAGAACAATTTGCAAGATCCCAATAATAGGAGAGTTATAATATGTGATGAGCTATTCCGCACCCTATTTGATGTCGATTCTATCGATATGTTTCAAATGAACAAAGCTCTGTCCAAGCACATATTGCCTTTAAATCAGGAAGCAGCTCTAGAGAACGCTTCACAAACAGAGAAGCAGTCTGAACATGAGCAAGAAGATTCGGATGAAGCTGACCACAACGAAAAACGGCAGAAGAATGGAGACTGA

Protein Analysis

389

Amino Acids

44.36

Weight (kDa)

4.96

Isoelectric Point (pI)

66.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 2 - 54 2.2e-18 DEK C terminal domain
SWIB PF02201 131 - 201 4.8e-30 SWIB/MDM2 domain
SWIB PF02201 279 - 348 3.8e-30 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 959
AccB1I GGYRCC 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 390
AccII CGCG 2 cut(s) 36, 90
AclWI GGATC 1 cut(s) 932
AcoI YGGCCR 2 cut(s) 438, 605
AcsI RAATTY 1 cut(s) 857
AcuI CTGAAG 2 cut(s) 696, 836
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 1 cut(s) 315
AfiI CCNNNNNNNGG 3 cut(s) 141, 484, 948
AgsI TTSAA 4 cut(s) 382, 413, 713, 1016
AjnI CCWGG 2 cut(s) 171, 186
AluBI AGCT 7 cut(s) 48, 94, 323, 973, 1028, 1067, 1130
AluI AGCT 7 cut(s) 48, 94, 323, 973, 1028, 1067, 1130
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 405, 1155
AlwI GGATC 1 cut(s) 932
Ama87I CYCGRG 2 cut(s) 95, 164
AoxI GGCC 2 cut(s) 438, 605
ApeKI GCWGC 3 cut(s) 78, 747, 1064
ApoI RAATTY 1 cut(s) 857
Asp700I GAANNNNTTC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 4 cut(s) 16, 145, 496, 626
AsuC2I CCSGG 3 cut(s) 143, 479, 920
AsuHPI GGTGA 2 cut(s) 176, 251
AvaI CYCGRG 2 cut(s) 95, 164
AvaII GGWCC 4 cut(s) 16, 145, 496, 626
BalI TGGCCA 2 cut(s) 440, 607
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 2 cut(s) 96, 432
BbsI GAAGAC 3 cut(s) 201, 294, 660
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 3 cut(s) 90, 759, 1076
BccI CCATC 1 cut(s) 617
BceAI ACGGC 1 cut(s) 1163
BciT130I CCWGG 2 cut(s) 173, 188
BclI TGATCA 1 cut(s) 661
BcnI CCSGG 3 cut(s) 143, 479, 920
BcoDI GTCTC 2 cut(s) 405, 1155
BfaI CTAG 2 cut(s) 882, 1070
BfoI RGCGCY 1 cut(s) 114
BisI GCNGC 7 cut(s) 79, 88, 213, 216, 376, 748, 1065
BlsI GCNGC 7 cut(s) 80, 89, 214, 217, 377, 749, 1066
Bme1390I CCNGG 5 cut(s) 143, 173, 188, 479, 920
Bme18I GGWCC 4 cut(s) 16, 145, 496, 626
BmeT110I CYCGRG 2 cut(s) 95, 164
BmgT120I GGNCC 4 cut(s) 16, 145, 496, 626
BmiI GGNNCC 5 cut(s) 112, 146, 247, 309, 498
BmrFI CCNGG 5 cut(s) 143, 173, 188, 479, 920
BpiI GAAGAC 3 cut(s) 201, 294, 660
BplI GAGNNNNNCTC 2 cut(s) 826, 858
BpmI CTGGAG 2 cut(s) 828, 885
Bpu10I CCTNAGC 1 cut(s) 44
BpuMI CCSGG 3 cut(s) 143, 479, 920
Bsa29I ATCGAT 1 cut(s) 1005
BsaHI GRCGYC 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 126
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 484, 948
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 311, 868
BseBI CCWGG 2 cut(s) 173, 188
BseCI ATCGAT 1 cut(s) 1005
BseGI GGATG 2 cut(s) 628, 1129
BseLI CCNNNNNNNGG 3 cut(s) 141, 484, 948
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 2 cut(s) 311, 868
BseRI GAGGAG 5 cut(s) 40, 236, 239, 242, 245
BseXI GCAGC 3 cut(s) 90, 759, 1076
Bsh1236I CGCG 2 cut(s) 36, 90
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 2 cut(s) 440, 607
BshNI GGYRCC 1 cut(s) 110
BshVI ATCGAT 1 cut(s) 1005
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 2 cut(s) 95, 164
BsiSI CCGG 5 cut(s) 75, 127, 142, 478, 919
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 3 cut(s) 141, 484, 948
BsmAI GTCTC 2 cut(s) 405, 1155
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 2 cut(s) 440, 607
BsoBI CYCGRG 2 cut(s) 95, 164
Bsp1286I GDGCHC 2 cut(s) 96, 432
Bsp143I GATC 3 cut(s) 115, 661, 937
BspANI GGCC 2 cut(s) 440, 607
BspCNI CTCAG 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 1005
BspFNI CGCG 2 cut(s) 36, 90
BspLI GGNNCC 5 cut(s) 112, 146, 247, 309, 498
BspPI GGATC 1 cut(s) 932
BspT107I GGYRCC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 2 cut(s) 311, 868
BssAI RCCGGY 1 cut(s) 74
BssMI GATC 3 cut(s) 115, 661, 937
BssNAI GTATAC 1 cut(s) 391
BssNI GRCGYC 1 cut(s) 111
Bst1107I GTATAC 1 cut(s) 391
Bst2UI CCWGG 2 cut(s) 173, 188
Bst4CI ACNGT 3 cut(s) 388, 617, 659
Bst6I CTCTTC 1 cut(s) 297
BstACI GRCGYC 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 1045
BstC8I GCNNGC 2 cut(s) 76, 92
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 2 cut(s) 628, 1129
BstFNI CGCG 2 cut(s) 36, 90
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 3 cut(s) 118, 664, 940
BstMAI GTCTC 2 cut(s) 405, 1155
BstMBI GATC 3 cut(s) 115, 661, 937
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 4 cut(s) 84, 87, 100, 1045
BstNI CCWGG 2 cut(s) 173, 188
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 5 cut(s) 141, 171, 186, 477, 918
BstUI CGCG 2 cut(s) 36, 90
BstV1I GCAGC 3 cut(s) 90, 759, 1076
BstV2I GAAGAC 3 cut(s) 201, 294, 660
BstX2I RGATCY 1 cut(s) 937
BstXI CCANNNNNNTGG 1 cut(s) 349
BstYI RGATCY 1 cut(s) 937
BstZ17I GTATAC 1 cut(s) 391
Bsu15I ATCGAT 1 cut(s) 1005
BsuRI GGCC 2 cut(s) 440, 607
BsuTUI ATCGAT 1 cut(s) 1005
BtsCI GGATG 2 cut(s) 628, 1129
BtsIMutI CAGTG 3 cut(s) 608, 664, 861
Cac8I GCNNGC 2 cut(s) 76, 92
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 4 cut(s) 16, 145, 496, 626
ClaI ATCGAT 1 cut(s) 1005
CseI GACGC 2 cut(s) 70, 858
Csp6I GTAC 1 cut(s) 314
CviAII CATG 3 cut(s) 539, 551, 1106
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 1 cut(s) 44
DinI GGCGCC 1 cut(s) 112
DpnI GATC 3 cut(s) 117, 663, 939
DpnII GATC 3 cut(s) 115, 661, 937
DraI TTTAAA 2 cut(s) 574, 1053
EaeI YGGCCR 2 cut(s) 438, 605
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
EciI GGCGGA 3 cut(s) 74, 233, 526
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 2 cut(s) 96, 432
Eco47I GGWCC 4 cut(s) 16, 145, 496, 626
Eco53kI GAGCTC 1 cut(s) 94
Eco57I CTGAAG 2 cut(s) 696, 836
Eco88I CYCGRG 2 cut(s) 95, 164
EcoICRI GAGCTC 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 496
EcoRII CCWGG 2 cut(s) 171, 186
EcoT38I GRGCYC 2 cut(s) 96, 432
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
FaeI CATG 3 cut(s) 542, 554, 1109
FaqI GGGAC 1 cut(s) 158
FatI CATG 3 cut(s) 538, 550, 1105
FauI CCCGC 1 cut(s) 35
FbaI TGATCA 1 cut(s) 661
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 7 cut(s) 79, 88, 213, 216, 376, 748, 1065
FokI GGATG 2 cut(s) 635, 1136
FriOI GRGCYC 2 cut(s) 96, 432
Fsp4HI GCNGC 7 cut(s) 79, 88, 213, 216, 376, 748, 1065
FspBI CTAG 2 cut(s) 882, 1070
GlaI GCGC 1 cut(s) 112
GluI GCNGC 7 cut(s) 79, 88, 213, 216, 376, 748, 1065
GsuI CTGGAG 2 cut(s) 828, 885
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 2 cut(s) 440, 607
HapII CCGG 5 cut(s) 75, 127, 142, 478, 919
HgaI GACGC 2 cut(s) 70, 858
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 3 cut(s) 542, 554, 1109
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 3 cut(s) 11, 998, 1118
HpaII CCGG 5 cut(s) 75, 127, 142, 478, 919
HphI GGTGA 2 cut(s) 176, 251
Hpy166II GTNNAC 2 cut(s) 391, 758
Hpy188III TCNNGA 9 cut(s) 22, 97, 166, 620, 802, 845, 898, 1058, 1070
Hpy8I GTNNAC 2 cut(s) 391, 758
Hpy99I CGWCG 5 cut(s) 203, 206, 272, 275, 330
HpyAV CCTTC 5 cut(s) 200, 236, 340, 671, 768
HpyCH4III ACNGT 3 cut(s) 388, 617, 659
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 3 cut(s) 365, 493, 934
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 87, 100, 1045
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 3 cut(s) 542, 554, 1109
HspAI GCGC 1 cut(s) 111
KasI GGCGCC 1 cut(s) 110
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 3 cut(s) 115, 661, 937
LmnI GCTCC 4 cut(s) 53, 209, 251, 866
Lsp1109I GCAGC 3 cut(s) 90, 759, 1076
MaeI CTAG 2 cut(s) 882, 1070
MaeII ACGT 1 cut(s) 273
MalI GATC 3 cut(s) 117, 663, 939
MbiI CCGCTC 1 cut(s) 212
MboI GATC 3 cut(s) 115, 661, 937
MfeI CAATTG 1 cut(s) 751
MflI RGATCY 1 cut(s) 937
MhlI GDGCHC 2 cut(s) 96, 432
MlsI TGGCCA 2 cut(s) 440, 607
MluCI AATT 6 cut(s) 751, 827, 857, 875, 910, 928
MluNI TGGCCA 2 cut(s) 440, 607
Mly113I GGCGCC 1 cut(s) 111
MmeI TCCRAC 3 cut(s) 78, 147, 403
Mox20I TGGCCA 2 cut(s) 440, 607
MroNI GCCGGC 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 104
MscI TGGCCA 2 cut(s) 440, 607
MseI TTAA 3 cut(s) 276, 573, 1052
Msp20I TGGCCA 2 cut(s) 440, 607
MspI CCGG 5 cut(s) 75, 127, 142, 478, 919
MspR9I CCNGG 5 cut(s) 143, 173, 188, 479, 920
MunI CAATTG 1 cut(s) 751
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 2 cut(s) 173, 188
MvnI CGCG 2 cut(s) 36, 90
MwoI GCNNNNNNNGC 4 cut(s) 84, 87, 100, 1045
NaeI GCCGGC 1 cut(s) 76
NarI GGCGCC 1 cut(s) 111
NciI CCSGG 3 cut(s) 143, 479, 920
NdeII GATC 3 cut(s) 115, 661, 937
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 3 cut(s) 542, 554, 1109
NlaIV GGNNCC 5 cut(s) 112, 146, 247, 309, 498
NmeAIII GCCGAG 1 cut(s) 283
NspI RCATGY 1 cut(s) 542
PaeR7I CTCGAG 2 cut(s) 95, 164
PcsI WCGNNNNNNNCGW 3 cut(s) 198, 322, 1002
PctI GAATGC 1 cut(s) 259
PdiI GCCGGC 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 3 cut(s) 11, 998, 1118
PfoI TCCNGGA 3 cut(s) 141, 477, 918
PkrI GCNGC 7 cut(s) 80, 89, 214, 217, 377, 749, 1066
PluTI GGCGCC 1 cut(s) 114
PpuMI RGGWCCY 1 cut(s) 496
PsiI TTATAA 1 cut(s) 959
Psp124BI GAGCTC 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 2 cut(s) 171, 186
PspGI CCWGG 2 cut(s) 171, 186
PspN4I GGNNCC 5 cut(s) 112, 146, 247, 309, 498
PspPI GGNCC 4 cut(s) 16, 145, 496, 626
PspPPI RGGWCCY 1 cut(s) 496
PsuI RGATCY 1 cut(s) 937
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 3 cut(s) 276, 573, 1052
SatI GCNGC 7 cut(s) 79, 88, 213, 216, 376, 748, 1065
Sau3AI GATC 3 cut(s) 115, 661, 937
Sau96I GGNCC 4 cut(s) 16, 145, 496, 626
ScrFI CCNGG 5 cut(s) 143, 173, 188, 479, 920
SduI GDGCHC 2 cut(s) 96, 432
SfoI GGCGCC 1 cut(s) 112
Sfr274I CTCGAG 2 cut(s) 95, 164
SinI GGWCC 4 cut(s) 16, 145, 496, 626
SlaI CTCGAG 2 cut(s) 95, 164
SmlI CTYRAG 2 cut(s) 95, 164
SmoI CTYRAG 2 cut(s) 95, 164
Sse9I AATT 6 cut(s) 751, 827, 857, 875, 910, 928
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 2 cut(s) 882, 1070
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 5 cut(s) 141, 171, 186, 477, 918
TaaI ACNGT 3 cut(s) 388, 617, 659
TaiI ACGT 1 cut(s) 276
TaqI TCGA 8 cut(s) 60, 96, 153, 165, 325, 833, 996, 1005
TasI AATT 6 cut(s) 751, 827, 857, 875, 910, 928
TauI GCSGC 4 cut(s) 90, 215, 218, 378
TfiI GAWTC 3 cut(s) 11, 998, 1118
Tru1I TTAA 3 cut(s) 276, 573, 1052
Tru9I TTAA 3 cut(s) 276, 573, 1052
TscAI CASTG 3 cut(s) 615, 664, 868
TseI GCWGC 3 cut(s) 78, 747, 1064
TspDTI ATGAA 5 cut(s) 309, 543, 593, 1034, 1140
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 3 cut(s) 615, 664, 868
VpaK11BI GGWCC 4 cut(s) 16, 145, 496, 626
XapI RAATTY 1 cut(s) 857
XbaI TCTAGA 1 cut(s) 1069
XceI RCATGY 1 cut(s) 542
XhoI CTCGAG 2 cut(s) 95, 164
XmiI GTMKAC 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 2 cut(s) 882, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.