Upstream activation factor subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G49520 AT3G19080 AT3G19080 AT3G19080 AT3G19080 |
| fragaria_vesca | FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 |
| malus_domestica | MD10G1089200.v1.1 |
| prunus_persica | Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 |
| pyrus_communis | pycom05g06780 pycom10g07210 |
| rosa_chinensis | RchiOBHm_Chr6g0259201 |
| rosa_laevigata | RLG00000014549 |
| rosa_multiflora | Rmu_ssc0000050.1_g000095 |
| rosa_roxburghii | Rroxscaffold_7G00206510 |
| rosa_rugosa | Rorug05G0585700 Rorug05G0585800 Rorug05G0585900 |
| rosa_samantha | Rh6AG102700 Rh6BG095000 Rh6BG095100 Rh6CG092000 Rh6DG086000 |
| rosa_wichuraiana | Rw6G008870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 959 |
| AccB1I | GGYRCC | 1 cut(s) | 110 |
| AccBSI | CCGCTC | 1 cut(s) | 212 |
| AccI | GTMKAC | 1 cut(s) | 390 |
| AccII | CGCG | 2 cut(s) | 36, 90 |
| AclWI | GGATC | 1 cut(s) | 932 |
| AcoI | YGGCCR | 2 cut(s) | 438, 605 |
| AcsI | RAATTY | 1 cut(s) | 857 |
| AcuI | CTGAAG | 2 cut(s) | 696, 836 |
| AcyI | GRCGYC | 1 cut(s) | 111 |
| AfaI | GTAC | 1 cut(s) | 315 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 141, 484, 948 |
| AgsI | TTSAA | 4 cut(s) | 382, 413, 713, 1016 |
| AjnI | CCWGG | 2 cut(s) | 171, 186 |
| AluBI | AGCT | 7 cut(s) | 48, 94, 323, 973, 1028, 1067, 1130 |
| AluI | AGCT | 7 cut(s) | 48, 94, 323, 973, 1028, 1067, 1130 |
| Alw21I | GWGCWC | 1 cut(s) | 96 |
| Alw26I | GTCTC | 2 cut(s) | 405, 1155 |
| AlwI | GGATC | 1 cut(s) | 932 |
| Ama87I | CYCGRG | 2 cut(s) | 95, 164 |
| AoxI | GGCC | 2 cut(s) | 438, 605 |
| ApeKI | GCWGC | 3 cut(s) | 78, 747, 1064 |
| ApoI | RAATTY | 1 cut(s) | 857 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 104 |
| AspLEI | GCGC | 1 cut(s) | 113 |
| AspS9I | GGNCC | 4 cut(s) | 16, 145, 496, 626 |
| AsuC2I | CCSGG | 3 cut(s) | 143, 479, 920 |
| AsuHPI | GGTGA | 2 cut(s) | 176, 251 |
| AvaI | CYCGRG | 2 cut(s) | 95, 164 |
| AvaII | GGWCC | 4 cut(s) | 16, 145, 496, 626 |
| BalI | TGGCCA | 2 cut(s) | 440, 607 |
| BanI | GGYRCC | 1 cut(s) | 110 |
| BanII | GRGCYC | 2 cut(s) | 96, 432 |
| BbsI | GAAGAC | 3 cut(s) | 201, 294, 660 |
| Bbv12I | GWGCWC | 1 cut(s) | 96 |
| BbvCI | CCTCAGC | 1 cut(s) | 44 |
| BbvI | GCAGC | 3 cut(s) | 90, 759, 1076 |
| BccI | CCATC | 1 cut(s) | 617 |
| BceAI | ACGGC | 1 cut(s) | 1163 |
| BciT130I | CCWGG | 2 cut(s) | 173, 188 |
| BclI | TGATCA | 1 cut(s) | 661 |
| BcnI | CCSGG | 3 cut(s) | 143, 479, 920 |
| BcoDI | GTCTC | 2 cut(s) | 405, 1155 |
| BfaI | CTAG | 2 cut(s) | 882, 1070 |
| BfoI | RGCGCY | 1 cut(s) | 114 |
| BisI | GCNGC | 7 cut(s) | 79, 88, 213, 216, 376, 748, 1065 |
| BlsI | GCNGC | 7 cut(s) | 80, 89, 214, 217, 377, 749, 1066 |
| Bme1390I | CCNGG | 5 cut(s) | 143, 173, 188, 479, 920 |
| Bme18I | GGWCC | 4 cut(s) | 16, 145, 496, 626 |
| BmeT110I | CYCGRG | 2 cut(s) | 95, 164 |
| BmgT120I | GGNCC | 4 cut(s) | 16, 145, 496, 626 |
| BmiI | GGNNCC | 5 cut(s) | 112, 146, 247, 309, 498 |
| BmrFI | CCNGG | 5 cut(s) | 143, 173, 188, 479, 920 |
| BpiI | GAAGAC | 3 cut(s) | 201, 294, 660 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 826, 858 |
| BpmI | CTGGAG | 2 cut(s) | 828, 885 |
| Bpu10I | CCTNAGC | 1 cut(s) | 44 |
| BpuMI | CCSGG | 3 cut(s) | 143, 479, 920 |
| Bsa29I | ATCGAT | 1 cut(s) | 1005 |
| BsaHI | GRCGYC | 1 cut(s) | 111 |
| BsaWI | WCCGGW | 1 cut(s) | 126 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 141, 484, 948 |
| Bse118I | RCCGGY | 1 cut(s) | 74 |
| Bse1I | ACTGG | 2 cut(s) | 311, 868 |
| BseBI | CCWGG | 2 cut(s) | 173, 188 |
| BseCI | ATCGAT | 1 cut(s) | 1005 |
| BseGI | GGATG | 2 cut(s) | 628, 1129 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 141, 484, 948 |
| BseMII | CTCAG | 1 cut(s) | 58 |
| BseNI | ACTGG | 2 cut(s) | 311, 868 |
| BseRI | GAGGAG | 5 cut(s) | 40, 236, 239, 242, 245 |
| BseXI | GCAGC | 3 cut(s) | 90, 759, 1076 |
| Bsh1236I | CGCG | 2 cut(s) | 36, 90 |
| Bsh1285I | CGRYCG | 1 cut(s) | 127 |
| BshFI | GGCC | 2 cut(s) | 440, 607 |
| BshNI | GGYRCC | 1 cut(s) | 110 |
| BshVI | ATCGAT | 1 cut(s) | 1005 |
| BsiEI | CGRYCG | 1 cut(s) | 127 |
| BsiHKAI | GWGCWC | 1 cut(s) | 96 |
| BsiHKCI | CYCGRG | 2 cut(s) | 95, 164 |
| BsiSI | CCGG | 5 cut(s) | 75, 127, 142, 478, 919 |
| BslFI | GGGAC | 1 cut(s) | 158 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 141, 484, 948 |
| BsmAI | GTCTC | 2 cut(s) | 405, 1155 |
| BsmFI | GGGAC | 1 cut(s) | 158 |
| BsmI | GAATGC | 1 cut(s) | 259 |
| BsnI | GGCC | 2 cut(s) | 440, 607 |
| BsoBI | CYCGRG | 2 cut(s) | 95, 164 |
| Bsp1286I | GDGCHC | 2 cut(s) | 96, 432 |
| Bsp143I | GATC | 3 cut(s) | 115, 661, 937 |
| BspANI | GGCC | 2 cut(s) | 440, 607 |
| BspCNI | CTCAG | 1 cut(s) | 57 |
| BspDI | ATCGAT | 1 cut(s) | 1005 |
| BspFNI | CGCG | 2 cut(s) | 36, 90 |
| BspLI | GGNNCC | 5 cut(s) | 112, 146, 247, 309, 498 |
| BspPI | GGATC | 1 cut(s) | 932 |
| BspT107I | GGYRCC | 1 cut(s) | 110 |
| BsrBI | CCGCTC | 1 cut(s) | 212 |
| BsrFI | RCCGGY | 1 cut(s) | 74 |
| BsrI | ACTGG | 2 cut(s) | 311, 868 |
| BssAI | RCCGGY | 1 cut(s) | 74 |
| BssMI | GATC | 3 cut(s) | 115, 661, 937 |
| BssNAI | GTATAC | 1 cut(s) | 391 |
| BssNI | GRCGYC | 1 cut(s) | 111 |
| Bst1107I | GTATAC | 1 cut(s) | 391 |
| Bst2UI | CCWGG | 2 cut(s) | 173, 188 |
| Bst4CI | ACNGT | 3 cut(s) | 388, 617, 659 |
| Bst6I | CTCTTC | 1 cut(s) | 297 |
| BstACI | GRCGYC | 1 cut(s) | 111 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1045 |
| BstC8I | GCNNGC | 2 cut(s) | 76, 92 |
| BstDEI | CTNAG | 1 cut(s) | 44 |
| BstF5I | GGATG | 2 cut(s) | 628, 1129 |
| BstFNI | CGCG | 2 cut(s) | 36, 90 |
| BstH2I | RGCGCY | 1 cut(s) | 114 |
| BstHHI | GCGC | 1 cut(s) | 113 |
| BstKTI | GATC | 3 cut(s) | 118, 664, 940 |
| BstMAI | GTCTC | 2 cut(s) | 405, 1155 |
| BstMBI | GATC | 3 cut(s) | 115, 661, 937 |
| BstMCI | CGRYCG | 1 cut(s) | 127 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 84, 87, 100, 1045 |
| BstNI | CCWGG | 2 cut(s) | 173, 188 |
| BstNSI | RCATGY | 1 cut(s) | 542 |
| BstSCI | CCNGG | 5 cut(s) | 141, 171, 186, 477, 918 |
| BstUI | CGCG | 2 cut(s) | 36, 90 |
| BstV1I | GCAGC | 3 cut(s) | 90, 759, 1076 |
| BstV2I | GAAGAC | 3 cut(s) | 201, 294, 660 |
| BstX2I | RGATCY | 1 cut(s) | 937 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 349 |
| BstYI | RGATCY | 1 cut(s) | 937 |
| BstZ17I | GTATAC | 1 cut(s) | 391 |
| Bsu15I | ATCGAT | 1 cut(s) | 1005 |
| BsuRI | GGCC | 2 cut(s) | 440, 607 |
| BsuTUI | ATCGAT | 1 cut(s) | 1005 |
| BtsCI | GGATG | 2 cut(s) | 628, 1129 |
| BtsIMutI | CAGTG | 3 cut(s) | 608, 664, 861 |
| Cac8I | GCNNGC | 2 cut(s) | 76, 92 |
| CfoI | GCGC | 1 cut(s) | 113 |
| Cfr10I | RCCGGY | 1 cut(s) | 74 |
| Cfr13I | GGNCC | 4 cut(s) | 16, 145, 496, 626 |
| ClaI | ATCGAT | 1 cut(s) | 1005 |
| CseI | GACGC | 2 cut(s) | 70, 858 |
| Csp6I | GTAC | 1 cut(s) | 314 |
| CviAII | CATG | 3 cut(s) | 539, 551, 1106 |
| CviQI | GTAC | 1 cut(s) | 314 |
| DdeI | CTNAG | 1 cut(s) | 44 |
| DinI | GGCGCC | 1 cut(s) | 112 |
| DpnI | GATC | 3 cut(s) | 117, 663, 939 |
| DpnII | GATC | 3 cut(s) | 115, 661, 937 |
| DraI | TTTAAA | 2 cut(s) | 574, 1053 |
| EaeI | YGGCCR | 2 cut(s) | 438, 605 |
| Eam1104I | CTCTTC | 1 cut(s) | 297 |
| EarI | CTCTTC | 1 cut(s) | 297 |
| EciI | GGCGGA | 3 cut(s) | 74, 233, 526 |
| Ecl136II | GAGCTC | 1 cut(s) | 94 |
| Eco24I | GRGCYC | 2 cut(s) | 96, 432 |
| Eco47I | GGWCC | 4 cut(s) | 16, 145, 496, 626 |
| Eco53kI | GAGCTC | 1 cut(s) | 94 |
| Eco57I | CTGAAG | 2 cut(s) | 696, 836 |
| Eco88I | CYCGRG | 2 cut(s) | 95, 164 |
| EcoICRI | GAGCTC | 1 cut(s) | 94 |
| EcoO109I | RGGNCCY | 1 cut(s) | 496 |
| EcoRII | CCWGG | 2 cut(s) | 171, 186 |
| EcoT38I | GRGCYC | 2 cut(s) | 96, 432 |
| EgeI | GGCGCC | 1 cut(s) | 112 |
| EheI | GGCGCC | 1 cut(s) | 112 |
| FaeI | CATG | 3 cut(s) | 542, 554, 1109 |
| FaqI | GGGAC | 1 cut(s) | 158 |
| FatI | CATG | 3 cut(s) | 538, 550, 1105 |
| FauI | CCCGC | 1 cut(s) | 35 |
| FbaI | TGATCA | 1 cut(s) | 661 |
| FblI | GTMKAC | 1 cut(s) | 390 |
| Fnu4HI | GCNGC | 7 cut(s) | 79, 88, 213, 216, 376, 748, 1065 |
| FokI | GGATG | 2 cut(s) | 635, 1136 |
| FriOI | GRGCYC | 2 cut(s) | 96, 432 |
| Fsp4HI | GCNGC | 7 cut(s) | 79, 88, 213, 216, 376, 748, 1065 |
| FspBI | CTAG | 2 cut(s) | 882, 1070 |
| GlaI | GCGC | 1 cut(s) | 112 |
| GluI | GCNGC | 7 cut(s) | 79, 88, 213, 216, 376, 748, 1065 |
| GsuI | CTGGAG | 2 cut(s) | 828, 885 |
| HaeII | RGCGCY | 1 cut(s) | 114 |
| HaeIII | GGCC | 2 cut(s) | 440, 607 |
| HapII | CCGG | 5 cut(s) | 75, 127, 142, 478, 919 |
| HgaI | GACGC | 2 cut(s) | 70, 858 |
| HhaI | GCGC | 1 cut(s) | 113 |
| Hin1I | GRCGYC | 1 cut(s) | 111 |
| Hin1II | CATG | 3 cut(s) | 542, 554, 1109 |
| Hin6I | GCGC | 1 cut(s) | 111 |
| HinP1I | GCGC | 1 cut(s) | 111 |
| HinfI | GANTC | 3 cut(s) | 11, 998, 1118 |
| HpaII | CCGG | 5 cut(s) | 75, 127, 142, 478, 919 |
| HphI | GGTGA | 2 cut(s) | 176, 251 |
| Hpy166II | GTNNAC | 2 cut(s) | 391, 758 |
| Hpy188III | TCNNGA | 9 cut(s) | 22, 97, 166, 620, 802, 845, 898, 1058, 1070 |
| Hpy8I | GTNNAC | 2 cut(s) | 391, 758 |
| Hpy99I | CGWCG | 5 cut(s) | 203, 206, 272, 275, 330 |
| HpyAV | CCTTC | 5 cut(s) | 200, 236, 340, 671, 768 |
| HpyCH4III | ACNGT | 3 cut(s) | 388, 617, 659 |
| HpyCH4IV | ACGT | 1 cut(s) | 273 |
| HpyCH4V | TGCA | 3 cut(s) | 365, 493, 934 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 84, 87, 100, 1045 |
| HpyF3I | CTNAG | 1 cut(s) | 44 |
| HpySE526I | ACGT | 1 cut(s) | 273 |
| Hsp92I | GRCGYC | 1 cut(s) | 111 |
| Hsp92II | CATG | 3 cut(s) | 542, 554, 1109 |
| HspAI | GCGC | 1 cut(s) | 111 |
| KasI | GGCGCC | 1 cut(s) | 110 |
| KroI | GCCGGC | 1 cut(s) | 74 |
| KroNI | GCCGGC | 1 cut(s) | 76 |
| Ksp22I | TGATCA | 1 cut(s) | 661 |
| Kzo9I | GATC | 3 cut(s) | 115, 661, 937 |
| LmnI | GCTCC | 4 cut(s) | 53, 209, 251, 866 |
| Lsp1109I | GCAGC | 3 cut(s) | 90, 759, 1076 |
| MaeI | CTAG | 2 cut(s) | 882, 1070 |
| MaeII | ACGT | 1 cut(s) | 273 |
| MalI | GATC | 3 cut(s) | 117, 663, 939 |
| MbiI | CCGCTC | 1 cut(s) | 212 |
| MboI | GATC | 3 cut(s) | 115, 661, 937 |
| MfeI | CAATTG | 1 cut(s) | 751 |
| MflI | RGATCY | 1 cut(s) | 937 |
| MhlI | GDGCHC | 2 cut(s) | 96, 432 |
| MlsI | TGGCCA | 2 cut(s) | 440, 607 |
| MluCI | AATT | 6 cut(s) | 751, 827, 857, 875, 910, 928 |
| MluNI | TGGCCA | 2 cut(s) | 440, 607 |
| Mly113I | GGCGCC | 1 cut(s) | 111 |
| MmeI | TCCRAC | 3 cut(s) | 78, 147, 403 |
| Mox20I | TGGCCA | 2 cut(s) | 440, 607 |
| MroNI | GCCGGC | 1 cut(s) | 74 |
| MroXI | GAANNNNTTC | 1 cut(s) | 104 |
| MscI | TGGCCA | 2 cut(s) | 440, 607 |
| MseI | TTAA | 3 cut(s) | 276, 573, 1052 |
| Msp20I | TGGCCA | 2 cut(s) | 440, 607 |
| MspI | CCGG | 5 cut(s) | 75, 127, 142, 478, 919 |
| MspR9I | CCNGG | 5 cut(s) | 143, 173, 188, 479, 920 |
| MunI | CAATTG | 1 cut(s) | 751 |
| Mva1269I | GAATGC | 1 cut(s) | 259 |
| MvaI | CCWGG | 2 cut(s) | 173, 188 |
| MvnI | CGCG | 2 cut(s) | 36, 90 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 84, 87, 100, 1045 |
| NaeI | GCCGGC | 1 cut(s) | 76 |
| NarI | GGCGCC | 1 cut(s) | 111 |
| NciI | CCSGG | 3 cut(s) | 143, 479, 920 |
| NdeII | GATC | 3 cut(s) | 115, 661, 937 |
| NgoMIV | GCCGGC | 1 cut(s) | 74 |
| NlaIII | CATG | 3 cut(s) | 542, 554, 1109 |
| NlaIV | GGNNCC | 5 cut(s) | 112, 146, 247, 309, 498 |
| NmeAIII | GCCGAG | 1 cut(s) | 283 |
| NspI | RCATGY | 1 cut(s) | 542 |
| PaeR7I | CTCGAG | 2 cut(s) | 95, 164 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 198, 322, 1002 |
| PctI | GAATGC | 1 cut(s) | 259 |
| PdiI | GCCGGC | 1 cut(s) | 76 |
| PdmI | GAANNNNTTC | 1 cut(s) | 104 |
| PfeI | GAWTC | 3 cut(s) | 11, 998, 1118 |
| PfoI | TCCNGGA | 3 cut(s) | 141, 477, 918 |
| PkrI | GCNGC | 7 cut(s) | 80, 89, 214, 217, 377, 749, 1066 |
| PluTI | GGCGCC | 1 cut(s) | 114 |
| PpuMI | RGGWCCY | 1 cut(s) | 496 |
| PsiI | TTATAA | 1 cut(s) | 959 |
| Psp124BI | GAGCTC | 1 cut(s) | 96 |
| Psp5II | RGGWCCY | 1 cut(s) | 496 |
| Psp6I | CCWGG | 2 cut(s) | 171, 186 |
| PspGI | CCWGG | 2 cut(s) | 171, 186 |
| PspN4I | GGNNCC | 5 cut(s) | 112, 146, 247, 309, 498 |
| PspPI | GGNCC | 4 cut(s) | 16, 145, 496, 626 |
| PspPPI | RGGWCCY | 1 cut(s) | 496 |
| PsuI | RGATCY | 1 cut(s) | 937 |
| RsaI | GTAC | 1 cut(s) | 315 |
| RsaNI | GTAC | 1 cut(s) | 314 |
| SacI | GAGCTC | 1 cut(s) | 96 |
| SaqAI | TTAA | 3 cut(s) | 276, 573, 1052 |
| SatI | GCNGC | 7 cut(s) | 79, 88, 213, 216, 376, 748, 1065 |
| Sau3AI | GATC | 3 cut(s) | 115, 661, 937 |
| Sau96I | GGNCC | 4 cut(s) | 16, 145, 496, 626 |
| ScrFI | CCNGG | 5 cut(s) | 143, 173, 188, 479, 920 |
| SduI | GDGCHC | 2 cut(s) | 96, 432 |
| SfoI | GGCGCC | 1 cut(s) | 112 |
| Sfr274I | CTCGAG | 2 cut(s) | 95, 164 |
| SinI | GGWCC | 4 cut(s) | 16, 145, 496, 626 |
| SlaI | CTCGAG | 2 cut(s) | 95, 164 |
| SmlI | CTYRAG | 2 cut(s) | 95, 164 |
| SmoI | CTYRAG | 2 cut(s) | 95, 164 |
| Sse9I | AATT | 6 cut(s) | 751, 827, 857, 875, 910, 928 |
| SspDI | GGCGCC | 1 cut(s) | 110 |
| SspMI | CTAG | 2 cut(s) | 882, 1070 |
| SstI | GAGCTC | 1 cut(s) | 96 |
| StyD4I | CCNGG | 5 cut(s) | 141, 171, 186, 477, 918 |
| TaaI | ACNGT | 3 cut(s) | 388, 617, 659 |
| TaiI | ACGT | 1 cut(s) | 276 |
| TaqI | TCGA | 8 cut(s) | 60, 96, 153, 165, 325, 833, 996, 1005 |
| TasI | AATT | 6 cut(s) | 751, 827, 857, 875, 910, 928 |
| TauI | GCSGC | 4 cut(s) | 90, 215, 218, 378 |
| TfiI | GAWTC | 3 cut(s) | 11, 998, 1118 |
| Tru1I | TTAA | 3 cut(s) | 276, 573, 1052 |
| Tru9I | TTAA | 3 cut(s) | 276, 573, 1052 |
| TscAI | CASTG | 3 cut(s) | 615, 664, 868 |
| TseI | GCWGC | 3 cut(s) | 78, 747, 1064 |
| TspDTI | ATGAA | 5 cut(s) | 309, 543, 593, 1034, 1140 |
| TspGWI | ACGGA | 1 cut(s) | 343 |
| TspRI | CASTG | 3 cut(s) | 615, 664, 868 |
| VpaK11BI | GGWCC | 4 cut(s) | 16, 145, 496, 626 |
| XapI | RAATTY | 1 cut(s) | 857 |
| XbaI | TCTAGA | 1 cut(s) | 1069 |
| XceI | RCATGY | 1 cut(s) | 542 |
| XhoI | CTCGAG | 2 cut(s) | 95, 164 |
| XmiI | GTMKAC | 1 cut(s) | 390 |
| XmnI | GAANNNNTTC | 1 cut(s) | 104 |
| XspI | CTAG | 2 cut(s) | 882, 1070 |