Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003341

Physical Location & Seq

Genomic Coordinates Reverse (-)

14937290 .. 14939580

Gene Structure 2291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG095100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGTTTCGGAATCGGACCTCCTCACCCGGCTCCGGGAAATCCTCGGCTCTTCGGACCTCGACACCGCCACCGCCGGCAGCGTCCGCCGCGAGCTCGAGAAACATTTCGGGGCCGATCTATCCGACCGGAAAGCCTTTATCAGGGACCAAATCGACATTTACCTCGAGAGCCACGTCGCCGATCCCCAGGACGACGAAGACGATGCGGCGGCGGCGCCGGAGCAGGAGGTCGGTGAAGGCTCCGAGAATGCCGAGCAAAACGACGACGTTAAAGTAGAAGATGATGTTGAAGAAGAAGAAGAAGAAGAAGATGATGATGAGGAACCAGTAGGCAAAGCTAAACGGAAAAAAGCAGCCAAGAAGGTGGACAAAGGAGGTGCAAAACGAGGTGGGTTTAAAACAGTATACAGCCTGTCTCCACAACTTCAAGTAATTGTTGGAGAGCCTGAAATGGCCAGACCAGAGGTAGTGAAGAAACTTTGGGCTTATATCCGGGAAAAGGATTTGCAGGACCCAAAGAATAGGCGGAACATAAGATGTGATGAATCACTACATGCCATTTTTCGTGTTAAGTCTATTGATATGTTTAAAATGAATAAAGTCCTGTCCAAGCATATATGGCCGCTAAACAGGGAAGATGGTATGTCCAGAATTCTCTACCCCCAACCTTCTGGTGACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

227

Amino Acids

25.72

Weight (kDa)

4.76

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	2 - 54	3.9e-18	DEK C terminal domain
SWIB	PF02201	136 - 206	2.5e-30	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49520 AT3G19080 AT3G19080 AT3G19080 AT3G19080
fragaria_vesca	FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890
malus_domestica	MD10G1089200.v1.1
prunus_persica	Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1
pyrus_communis	pycom05g06780 pycom10g07210
rosa_chinensis	RchiOBHm_Chr6g0259201
rosa_laevigata	RLG00000014549
rosa_multiflora	Rmu_ssc0000050.1_g000095
rosa_roxburghii	Rroxscaffold_7G00206510
rosa_rugosa	Rorug05G0585700 Rorug05G0585800 Rorug05G0585900
rosa_samantha	Rh6AG102700 Rh6BG095000 Rh6BG095100 Rh6CG092000 Rh6DG086000
rosa_wichuraiana	Rw6G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	405
AccII	CGCG	1 cut(s)	90
AciI	CCGC	9 cut(s)	66, 72, 85, 88, 206, 209, 212, 526, 623
AclWI	GGATC	1 cut(s)	176
AcoI	YGGCCR	2 cut(s)	453, 620
AcsI	RAATTY	1 cut(s)	651
AcyI	GRCGYC	1 cut(s)	215
AfiI	CCNNNNNNNGG	4 cut(s)	33, 34, 141, 499
AgsI	TTSAA	2 cut(s)	290, 428
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	2 cut(s)	94, 338
AluI	AGCT	2 cut(s)	94, 338
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	1 cut(s)	176
Ama87I	CYCGRG	2 cut(s)	95, 164
AoxI	GGCC	3 cut(s)	111, 453, 620
ApeKI	GCWGC	2 cut(s)	78, 353
ApoI	RAATTY	1 cut(s)	651
Asp700I	GAANNNNTTC	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	5 cut(s)	16, 55, 111, 145, 511
AsuC2I	CCSGG	3 cut(s)	28, 35, 494
AsuHPI	GGTGA	2 cut(s)	16, 245
AvaI	CYCGRG	2 cut(s)	95, 164
AvaII	GGWCC	4 cut(s)	16, 55, 145, 511
BalI	TGGCCA	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	90, 365
BccI	CCATC	1 cut(s)	632
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	1 cut(s)	188
BcnI	CCSGG	3 cut(s)	28, 35, 494
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	1 cut(s)	682
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	7 cut(s)	79, 88, 207, 210, 213, 354, 623
BlsI	GCNGC	7 cut(s)	80, 89, 208, 211, 214, 355, 624
Bme1390I	CCNGG	4 cut(s)	28, 35, 188, 494
Bme18I	GGWCC	4 cut(s)	16, 55, 145, 511
BmeT110I	CYCGRG	2 cut(s)	95, 164
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	5 cut(s)	16, 55, 111, 145, 511
BmiI	GGNNCC	7 cut(s)	32, 112, 146, 216, 241, 324, 513
BmrFI	CCNGG	4 cut(s)	28, 35, 188, 494
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	204
BpuMI	CCSGG	3 cut(s)	28, 35, 494
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	43, 186
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	4 cut(s)	33, 34, 141, 499
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	43, 186
BseLI	CCNNNNNNNGG	4 cut(s)	33, 34, 141, 499
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	90, 365
Bsh1236I	CGCG	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	3 cut(s)	113, 455, 622
BshNI	GGYRCC	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	2 cut(s)	95, 164
BsiSI	CCGG	6 cut(s)	28, 34, 75, 127, 218, 493
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	4 cut(s)	33, 34, 141, 499
BsmAI	GTCTC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	3 cut(s)	113, 455, 622
BsoBI	CYCGRG	2 cut(s)	95, 164
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	115, 181
BspACI	CCGC	9 cut(s)	66, 72, 85, 88, 206, 209, 212, 526, 623
BspANI	GGCC	3 cut(s)	113, 455, 622
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	7 cut(s)	32, 112, 146, 216, 241, 324, 513
BspPI	GGATC	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	43, 186
BssMI	GATC	2 cut(s)	115, 181
BssNAI	GTATAC	1 cut(s)	406
BssNI	GRCGYC	1 cut(s)	215
Bst1107I	GTATAC	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	55
BstACI	GRCGYC	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	76, 92
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	2 cut(s)	118, 184
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	2 cut(s)	115, 181
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 87, 212, 619
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	4 cut(s)	26, 33, 186, 492
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	90, 365
BstV2I	GAAGAC	1 cut(s)	204
BstXI	CCANNNNNNTGG	2 cut(s)	364, 671
BstZ17I	GTATAC	1 cut(s)	406
BsuRI	GGCC	3 cut(s)	113, 455, 622
BtrI	CACGTC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	76, 92
CfoI	GCGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	5 cut(s)	16, 55, 111, 145, 511
CseI	GACGC	1 cut(s)	70
CviAII	CATG	1 cut(s)	554
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	2 cut(s)	117, 183
DpnII	GATC	2 cut(s)	115, 181
DraI	TTTAAA	2 cut(s)	397, 589
EaeI	YGGCCR	2 cut(s)	453, 620
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
EciI	GGCGGA	2 cut(s)	74, 541
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	4 cut(s)	16, 55, 145, 511
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	2 cut(s)	95, 164
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	651
EcoRII	CCWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	96
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
FaeI	CATG	1 cut(s)	557
FaiI	YATR	9 cut(s)	406, 489, 533, 555, 584, 615, 617, 619, 644
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	7 cut(s)	79, 88, 207, 210, 213, 354, 623
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	7 cut(s)	79, 88, 207, 210, 213, 354, 623
FspBI	CTAG	1 cut(s)	682
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	7 cut(s)	79, 88, 207, 210, 213, 354, 623
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	3 cut(s)	113, 455, 622
HapII	CCGG	6 cut(s)	28, 34, 75, 127, 218, 493
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	557
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	2 cut(s)	11, 545
HpaII	CCGG	6 cut(s)	28, 34, 75, 127, 218, 493
HphI	GGTGA	2 cut(s)	16, 245
Hpy166II	GTNNAC	2 cut(s)	367, 406
Hpy188I	TCNGA	5 cut(s)	10, 16, 55, 124, 244
Hpy188III	TCNNGA	3 cut(s)	97, 166, 648
Hpy8I	GTNNAC	2 cut(s)	367, 406
Hpy99I	CGWCG	4 cut(s)	179, 197, 266, 269
HpyAV	CCTTC	3 cut(s)	230, 355, 678
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	2 cut(s)	174, 267
HpyCH4V	TGCA	2 cut(s)	380, 508
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 87, 212, 619
HpySE526I	ACGT	2 cut(s)	174, 267
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	557
HspAI	GCGC	1 cut(s)	215
KasI	GGCGCC	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	115, 181
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	3 cut(s)	36, 220, 245
Lsp1109I	GCAGC	2 cut(s)	90, 365
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	682
MaeII	ACGT	2 cut(s)	174, 267
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	2 cut(s)	117, 183
MboI	GATC	2 cut(s)	115, 181
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	1 cut(s)	455
MluCI	AATT	2 cut(s)	432, 651
MluNI	TGGCCA	1 cut(s)	455
Mly113I	GGCGCC	1 cut(s)	215
MmeI	TCCRAC	2 cut(s)	147, 418
Mox20I	TGGCCA	1 cut(s)	455
MroNI	GCCGGC	1 cut(s)	74
MroXI	GAANNNNTTC	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	455
MseI	TTAA	4 cut(s)	270, 396, 570, 588
Msp20I	TGGCCA	1 cut(s)	455
MspI	CCGG	6 cut(s)	28, 34, 75, 127, 218, 493
MspR9I	CCNGG	4 cut(s)	28, 35, 188, 494
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	4 cut(s)	84, 87, 212, 619
NaeI	GCCGGC	1 cut(s)	76
NarI	GGCGCC	1 cut(s)	215
NciI	CCSGG	3 cut(s)	28, 35, 494
NdeII	GATC	2 cut(s)	115, 181
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	557
NlaIV	GGNNCC	7 cut(s)	32, 112, 146, 216, 241, 324, 513
NmeAIII	GCCGAG	2 cut(s)	24, 277
NmuCI	GTSAC	1 cut(s)	674
NspI	RCATGY	1 cut(s)	557
PaeR7I	CTCGAG	2 cut(s)	95, 164
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 198
PctI	GAATGC	1 cut(s)	253
PdiI	GCCGGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	11, 545
PfoI	TCCNGGA	2 cut(s)	33, 492
PkrI	GCNGC	7 cut(s)	80, 89, 208, 211, 214, 355, 624
PluTI	GGCGCC	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	511
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	7 cut(s)	32, 112, 146, 216, 241, 324, 513
PspPI	GGNCC	5 cut(s)	16, 55, 111, 145, 511
PspPPI	RGGWCCY	1 cut(s)	511
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	4 cut(s)	270, 396, 570, 588
SatI	GCNGC	7 cut(s)	79, 88, 207, 210, 213, 354, 623
Sau3AI	GATC	2 cut(s)	115, 181
Sau96I	GGNCC	5 cut(s)	16, 55, 111, 145, 511
ScrFI	CCNGG	4 cut(s)	28, 35, 188, 494
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	1 cut(s)	193
SfoI	GGCGCC	1 cut(s)	216
Sfr274I	CTCGAG	2 cut(s)	95, 164
SinI	GGWCC	4 cut(s)	16, 55, 145, 511
SlaI	CTCGAG	2 cut(s)	95, 164
SmlI	CTYRAG	2 cut(s)	95, 164
SmoI	CTYRAG	2 cut(s)	95, 164
Sse9I	AATT	2 cut(s)	432, 651
SsiI	CCGC	9 cut(s)	66, 72, 85, 88, 206, 209, 212, 526, 623
SspDI	GGCGCC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	682
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	4 cut(s)	26, 33, 186, 492
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	2 cut(s)	177, 270
TaqI	TCGA	4 cut(s)	60, 96, 153, 165
TasI	AATT	2 cut(s)	432, 651
TauI	GCSGC	5 cut(s)	90, 209, 212, 215, 625
TfiI	GAWTC	2 cut(s)	11, 545
Tru1I	TTAA	4 cut(s)	270, 396, 570, 588
Tru9I	TTAA	4 cut(s)	270, 396, 570, 588
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	2 cut(s)	78, 353
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	2 cut(s)	558, 608
TspGWI	ACGGA	1 cut(s)	358
VpaK11BI	GGWCC	4 cut(s)	16, 55, 145, 511
XagI	CCTNNNNNAGG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	651
XceI	RCATGY	1 cut(s)	557
XhoI	CTCGAG	2 cut(s)	95, 164
XmiI	GTMKAC	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.