Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003341

Physical Location & Seq

Genomic Coordinates Forward (+)

6595344 .. 6599089

Gene Structure 3746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G19080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGTTTCCGACTTGGACCTCGTGACCCGACTCCGTGAGATTCTCGGTAGCTCCGACCTGAACACGGCGACTCCGGCAAGCGTCCGTCGTCAGTTGGAGGCGGATTTCGGTGTGGACTTGACAGATAAAAAAGCGTATATTAGGGATCAAATCGATACTTTTCTCGAGAGCAATGGCGCGGTAGAAGACAAACCTGAGAGTCCCAAGGTAGAAGAATACATTAATGCCGACGAAATCAAGGCGGAAATTGAAGGAGGCGATGGAGAAGACCTCGACGGAGATGGAAGTGGAAGTGAGGAAGAGAAGGAAGAACGGCCAGTAAAGGCCAAGAAGCGAGGTGGTGGCATTACCAAAGTATCTCAGTTATCTCCACAACTTGAGAAAGTTGTTGGAGCATCTCAGTTAGGTCGAACCGAGGTTGTGAAGAAAATGTGGGCATATATCCGAGAGAAGGATTTGCAAGACCCAAAGGATAGGAGGAAGATAGTGTGTGACGAGTTGTTGCATTCCTTGTTCCGTGTTAAGACCATTAATATGTTTCAAATGAACAAGGCATTAACCAAGCATATTTGGCCCTTAGGTGATGGAGATGGGTGTGCTAACGATGTGAAAGAAGAAGATGAAGATGAGGCATCAGAGGGAACAGATAAGAAAGGGGAGCAGAGCGAAGAAGTGGAAGAGAATAAGGAAGAAGAAAGTGAAGAGCAGGAAGTTAGGAGTTTGCGGAAACGCAAGAGAAAAAAGCCAGCCAAGTCGGTAGAGAAGCCCAAGAGAAAAGGAGGAGGCGGCTTTGCTAAAGTTTGCAGCCTCTCGCCAGAGCTTCAGGCGTTTACTGGGGTGACAGAATTAGCCAGGACAGAGGTTGTGAAATTGCTTTGGAAGTACATAAAGGAGAACAATTTACAAGATCCGAATGATAAACGCTCTATAATATGCGACGAATCATTTCGATCTCTGTTCCCTGTCGAGTCCATCAATATGTTTCAAATGAATAAACAGCTAACAAAGCACATATGGCCTTTAGAGGATAATGCAGGAGAATCAGTTAGCTCTAAGTCTCCAAAGAATGGAAAGCAAAAAATGGAATCAGATGGAGATAGTGAGGAACCAAATGAGAAAGATAAAAAGCAGAAGAAAGAAGTTCTTGCTCCCCTTCCACTTTCAGATGCTCTTGTCAAGTTCTTGGGTGATGGAGAAAACTCGCTGTCGAGGGCGGATGTGGTAAAGAGATTGTGGGAGTACATAAATCATAATGATCTTCAGGATCCTTCTGACAAGAGGAGAGTCATATGCGATGAGAAGCTGAAAGAACTCTTTGAAGTTGATTCATTCGAAGACACATCAGTCTCAAAACTTCTGACCAACCACTTCATCAAGGCCGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

462

Amino Acids

52.24

Weight (kDa)

5.07

Isoelectric Point (pI)

60.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	2 - 55	3.2e-18	DEK C terminal domain
SWIB	PF02201	121 - 190	6.9e-28	SWIB/MDM2 domain
SWIB	PF02201	267 - 338	2.7e-30	SWIB/MDM2 domain
SWIB	PF02201	384 - 457	1.2e-24	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49520 AT3G19080 AT3G19080 AT3G19080 AT3G19080
fragaria_vesca	FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890
malus_domestica	MD10G1089200.v1.1
prunus_persica	Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1
pyrus_communis	pycom05g06780 pycom10g07210
rosa_chinensis	RchiOBHm_Chr6g0259201
rosa_laevigata	RLG00000014549
rosa_multiflora	Rmu_ssc0000050.1_g000095
rosa_roxburghii	Rroxscaffold_7G00206510
rosa_rugosa	Rorug05G0585700 Rorug05G0585800 Rorug05G0585900
rosa_samantha	Rh6AG102700 Rh6BG095000 Rh6BG095100 Rh6CG092000 Rh6DG086000
rosa_wichuraiana	Rw6G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1343
AccB7I	CCANNNNNTGG	1 cut(s)	1067
AccII	CGCG	1 cut(s)	179
AciI	CCGC	6 cut(s)	101, 179, 242, 724, 786, 1214
AclWI	GGATC	4 cut(s)	153, 902, 1259, 1272
AcoI	YGGCCR	1 cut(s)	314
AcuI	CTGAAG	2 cut(s)	806, 1244
AfaI	GTAC	2 cut(s)	884, 1241
AfiI	CCNNNNNNNGG	3 cut(s)	64, 451, 1067
AgsI	TTSAA	4 cut(s)	251, 542, 986, 1319
AjnI	CCWGG	1 cut(s)	851
AluBI	AGCT	5 cut(s)	51, 820, 1000, 1050, 1303
AluI	AGCT	5 cut(s)	51, 820, 1000, 1050, 1303
Alw26I	GTCTC	2 cut(s)	1062, 1351
AlwI	GGATC	4 cut(s)	153, 902, 1259, 1272
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	5 cut(s)	314, 324, 572, 1016, 1377
ApeKI	GCWGC	1 cut(s)	804
AseI	ATTAAT	2 cut(s)	222, 531
Asp700I	GAANNNNTTC	1 cut(s)	945
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	16, 573
AsuHPI	GGTGA	3 cut(s)	593, 850, 1199
AsuII	TTCGAA	1 cut(s)	1332
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	577
BaeI	ACNNNNGTAYC	2 cut(s)	339, 372
BamHI	GGATCC	1 cut(s)	1264
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	3 cut(s)	192, 273, 1341
BbvI	GCAGC	1 cut(s)	816
BccI	CCATC	7 cut(s)	254, 275, 578, 584, 980, 1085, 1184
BceAI	ACGGC	2 cut(s)	81, 329
BciT130I	CCWGG	1 cut(s)	853
BcoDI	GTCTC	2 cut(s)	1062, 1351
BisI	GCNGC	2 cut(s)	787, 805
BlsI	GCNGC	2 cut(s)	788, 806
Bme1390I	CCNGG	1 cut(s)	853
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	16, 573
BmiI	GGNNCC	2 cut(s)	1107, 1266
BmrFI	CCNGG	1 cut(s)	853
BmrI	ACTGGG	1 cut(s)	843
BmsI	GCATC	3 cut(s)	404, 641, 1156
BmuI	ACTGGG	1 cut(s)	843
BpiI	GAAGAC	3 cut(s)	192, 273, 1341
BplI	GAGNNNNNCTC	2 cut(s)	255, 287
Bpu14I	TTCGAA	1 cut(s)	1332
BpuEI	CTTGAG	1 cut(s)	398
Bsa29I	ATCGAT	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	204, 414
BsaXI	ACNNNNNCTCC	4 cut(s)	55, 85, 1029, 1059
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 451, 1067
Bse1I	ACTGG	2 cut(s)	317, 838
Bse21I	CCTNAGG	1 cut(s)	577
Bse3DI	GCAATG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	853
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	204, 414
BseGI	GGATG	1 cut(s)	1222
BseLI	CCNNNNNNNGG	3 cut(s)	64, 451, 1067
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	3 cut(s)	186, 374, 413
BseNI	ACTGG	2 cut(s)	317, 838
BseRI	GAGGAG	2 cut(s)	795, 1294
BseXI	GCAGC	1 cut(s)	816
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	5 cut(s)	316, 326, 574, 1018, 1379
BshVI	ATCGAT	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	64, 451, 1067
BsmAI	GTCTC	2 cut(s)	1062, 1351
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	5 cut(s)	316, 326, 574, 1018, 1379
BsoBI	CYCGRG	1 cut(s)	164
Bsp119I	TTCGAA	1 cut(s)	1332
Bsp143I	GATC	5 cut(s)	145, 907, 950, 1255, 1264
BspACI	CCGC	6 cut(s)	101, 179, 242, 724, 786, 1214
BspANI	GGCC	5 cut(s)	316, 326, 574, 1018, 1379
BspCNI	CTCAG	3 cut(s)	187, 373, 412
BspDI	ATCGAT	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	1107, 1266
BspPI	GGATC	4 cut(s)	153, 902, 1259, 1272
BspQI	GCTCTTC	1 cut(s)	696
BspT104I	TTCGAA	1 cut(s)	1332
BsrDI	GCAATG	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	317, 838
BssECI	CCNNGG	2 cut(s)	204, 414
BssMI	GATC	5 cut(s)	145, 907, 950, 1255, 1264
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	853
Bst6I	CTCTTC	3 cut(s)	294, 672, 696
BstBI	TTCGAA	1 cut(s)	1332
BstC8I	GCNNGC	2 cut(s)	79, 747
BstDEI	CTNAG	5 cut(s)	195, 360, 399, 577, 1053
BstF5I	GGATG	1 cut(s)	1222
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	5 cut(s)	148, 910, 953, 1258, 1267
BstMAI	GTCTC	2 cut(s)	1062, 1351
BstMBI	GATC	5 cut(s)	145, 907, 950, 1255, 1264
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 571, 1006, 1015
BstNI	CCWGG	1 cut(s)	853
BstSCI	CCNGG	1 cut(s)	851
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	816
BstV2I	GAAGAC	3 cut(s)	192, 273, 1341
BstX2I	RGATCY	2 cut(s)	907, 1264
BstYI	RGATCY	2 cut(s)	907, 1264
Bsu15I	ATCGAT	1 cut(s)	153
Bsu36I	CCTNAGG	1 cut(s)	577
BsuRI	GGCC	5 cut(s)	316, 326, 574, 1018, 1379
BsuTUI	ATCGAT	1 cut(s)	153
BtgZI	GCGATG	2 cut(s)	273, 1308
BtsCI	GGATG	1 cut(s)	1222
Cac8I	GCNNGC	2 cut(s)	79, 747
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	16, 573
ClaI	ATCGAT	1 cut(s)	153
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	883, 1240
CviQI	GTAC	2 cut(s)	883, 1240
DdeI	CTNAG	5 cut(s)	195, 360, 399, 577, 1053
DpnI	GATC	5 cut(s)	147, 909, 952, 1257, 1266
DpnII	GATC	5 cut(s)	145, 907, 950, 1255, 1264
DrdI	GACNNNNNNGTC	1 cut(s)	1343
DseDI	GACNNNNNNGTC	1 cut(s)	1343
EaeI	YGGCCR	1 cut(s)	314
Eam1104I	CTCTTC	3 cut(s)	294, 672, 696
EarI	CTCTTC	3 cut(s)	294, 672, 696
EciI	GGCGGA	3 cut(s)	116, 257, 1229
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	806, 1244
Eco81I	CCTNAGG	1 cut(s)	577
Eco88I	CYCGRG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	851
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FalI	AAGNNNNNCTT	2 cut(s)	1128, 1160
FaqI	GGGAC	1 cut(s)	186
FauNDI	CATATG	2 cut(s)	1013, 1289
Fnu4HI	GCNGC	2 cut(s)	787, 805
FokI	GGATG	1 cut(s)	1229
Fsp4HI	GCNGC	2 cut(s)	787, 805
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	2 cut(s)	787, 805
HaeIII	GGCC	5 cut(s)	316, 326, 574, 1018, 1379
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	3 cut(s)	593, 850, 1199
Hpy166II	GTNNAC	2 cut(s)	115, 831
Hpy188I	TCNGA	9 cut(s)	10, 55, 446, 637, 912, 1090, 1165, 1273, 1359
Hpy188III	TCNNGA	4 cut(s)	22, 164, 166, 1262
Hpy8I	GTNNAC	2 cut(s)	115, 831
Hpy99I	CGWCG	4 cut(s)	90, 233, 278, 941
HpyAV	CCTTC	5 cut(s)	245, 298, 445, 1163, 1278
HpyCH4V	TGCA	4 cut(s)	460, 505, 804, 1034
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 571, 1006, 1015
HpyF3I	CTNAG	5 cut(s)	195, 360, 399, 577, 1053
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	145, 907, 950, 1255, 1264
LguI	GCTCTTC	1 cut(s)	696
LmnI	GCTCC	4 cut(s)	56, 392, 658, 1153
Lsp1109I	GCAGC	1 cut(s)	816
LweI	GCATC	3 cut(s)	404, 641, 1156
MaeIII	GTNAC	3 cut(s)	22, 491, 838
MalI	GATC	5 cut(s)	147, 909, 952, 1257, 1266
MboI	GATC	5 cut(s)	145, 907, 950, 1255, 1264
MflI	RGATCY	2 cut(s)	907, 1264
MluCI	AATT	4 cut(s)	246, 845, 869, 898
MlyI	GAGTC	5 cut(s)	24, 64, 208, 977, 1293
MmeI	TCCRAC	4 cut(s)	33, 75, 78, 370
MroXI	GAANNNNTTC	1 cut(s)	945
MseI	TTAA	4 cut(s)	222, 522, 531, 557
MslI	CAYNNNNRTG	2 cut(s)	533, 977
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	853
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	853
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	74, 571, 1006, 1015
NdeI	CATATG	2 cut(s)	1013, 1289
NdeII	GATC	5 cut(s)	145, 907, 950, 1255, 1264
NlaIV	GGNNCC	2 cut(s)	1107, 1266
NmuCI	GTSAC	3 cut(s)	22, 491, 838
NspV	TTCGAA	1 cut(s)	1332
PaeR7I	CTCGAG	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	945
PfeI	GAWTC	5 cut(s)	40, 941, 1040, 1085, 1325
PflMI	CCANNNNNTGG	1 cut(s)	1067
PkrI	GCNGC	2 cut(s)	788, 806
PleI	GAGTC	5 cut(s)	24, 64, 207, 976, 1292
PpsI	GAGTC	5 cut(s)	24, 64, 207, 976, 1292
PshBI	ATTAAT	2 cut(s)	222, 531
Psp6I	CCWGG	1 cut(s)	851
PspGI	CCWGG	1 cut(s)	851
PspN4I	GGNNCC	2 cut(s)	1107, 1266
PspPI	GGNCC	2 cut(s)	16, 573
PsuI	RGATCY	2 cut(s)	907, 1264
RsaI	GTAC	2 cut(s)	884, 1241
RsaNI	GTAC	2 cut(s)	883, 1240
RseI	CAYNNNNRTG	2 cut(s)	533, 977
SapI	GCTCTTC	1 cut(s)	696
SaqAI	TTAA	4 cut(s)	222, 522, 531, 557
SatI	GCNGC	2 cut(s)	787, 805
Sau3AI	GATC	5 cut(s)	145, 907, 950, 1255, 1264
Sau96I	GGNCC	2 cut(s)	16, 573
SchI	GAGTC	5 cut(s)	24, 64, 208, 977, 1293
ScrFI	CCNGG	1 cut(s)	853
SfaNI	GCATC	3 cut(s)	404, 641, 1156
Sfr274I	CTCGAG	1 cut(s)	164
SfuI	TTCGAA	1 cut(s)	1332
SinI	GGWCC	1 cut(s)	16
SlaI	CTCGAG	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	533, 977
SmlI	CTYRAG	2 cut(s)	164, 377
SmoI	CTYRAG	2 cut(s)	164, 377
Sse9I	AATT	4 cut(s)	246, 845, 869, 898
SsiI	CCGC	6 cut(s)	101, 179, 242, 724, 786, 1214
StyD4I	CCNGG	1 cut(s)	851
StyI	CCWWGG	1 cut(s)	204
TaqI	TCGA	8 cut(s)	153, 165, 273, 409, 949, 966, 1208, 1332
TasI	AATT	4 cut(s)	246, 845, 869, 898
TatI	WGTACW	2 cut(s)	882, 1239
TauI	GCSGC	1 cut(s)	789
TfiI	GAWTC	5 cut(s)	40, 941, 1040, 1085, 1325
Tru1I	TTAA	4 cut(s)	222, 522, 531, 557
Tru9I	TTAA	4 cut(s)	222, 522, 531, 557
TseFI	GTSAC	3 cut(s)	22, 491, 838
TseI	GCWGC	1 cut(s)	804
Tsp45I	GTSAC	3 cut(s)	22, 491, 838
TspDTI	ATGAA	5 cut(s)	560, 636, 1004, 1317, 1360
TspGWI	ACGGA	4 cut(s)	23, 74, 291, 506
Van91I	CCANNNNNTGG	1 cut(s)	1067
VpaK11BI	GGWCC	1 cut(s)	16
VspI	ATTAAT	2 cut(s)	222, 531
XhoI	CTCGAG	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.