Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003341

Physical Location & Seq

Genomic Coordinates Forward (+)

54576885 .. 54583858

Gene Structure 6974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014549

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGTATCGGAATCGGACCTCCTGACCCGGCTCCGGGAAATCCTCAGCTCTTCGGACCTCGACACAGCCACCGCCGGCAGCGTCCGCCGCGAGCTCGAGAGCCATTTCGGGGCCGATCTATCCGACCGGAAAGCCTTTATCAGGGACCAAATTGACATTTACCTCGAGAGCCAGGTCGCCAATCCCCAGGACGACGAAGACGATGCGGCGGCGGCCCCGGAGGAGGAGGAGGTCGGTGAAGGCTCCGAGAATGCCGAGCAAAACGACGACGTTAAAGTAGAAGATGATGTTGAAGAAGAAGAAGAAGAAGAAGATGATGATGAGGAACCAGTAGGCAAAGCTAAACGGAAAAAAGCACCCAAGAAGATGGACAAAGGAGGTGCAAAACGAGGTGGGTTTAAAACAGTATACAGCCTGTCTCCACAACTTCAAGTAATTGTTGGAGAGCCTGAAATGGCCAGACCAGAGGTAGTGAAGAAACTTTGGGCTTATATCCGGGAAAAGGATTTGCAGGACCCAAAGAATAGGCGGAACATAAGATGTGATGAATCACTACATGCCGTTTTTCGTGTTAAGTCTATTGATATGTTTAAAATGAATAAAGTCCTGTCCAAGCATATATGGCCACTAAACAGGGAAGATGAACCTTTAAAGAAAATGAAGAAAGGGGAAGACAGTGATCACTCTATCTCCGAAGGAGATATAAGTAATGTAGAGGAACAAGAGGTTGAAGAAGAAGAAGAAGAAGTGAAGAAAGAAAAAGGCAGTAATCGAAAACAGACCAAGAAACGGAGGTCTGCTAAAGTTGATAAAGAAGTCAAGAAAAGGGGAGGTGGCTTTACCAAGTTATCGAGCCTTTCTCCAGAACTTCAAAAAATCACTGGAGCGTCAGAATTGGCTAGAACAGAGGTTGTCAAGAAGCTTTGGAACTATATCCGGGAGAACAATTTGCAAGATCCAAATAATAGGAGAATTATAATATGTGATGAGCTGTTCCGCACCCTTTTTGATGTCGATTCTATCGATATGTTTCAAATGAATAAAGCTCTGTCCAAGCACATATTGCCTTTAAATCAAGAAGCTCTAGACAACACTTCACAAACAGAGAAGCAGTCTGAACATGAGCAAGAAGCATCAATTTCAATATTCAGATTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

387

Amino Acids

44.28

Weight (kDa)

4.98

Isoelectric Point (pI)

68.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	2 - 54	3.7e-18	DEK C terminal domain
SWIB	PF02201	137 - 207	5.6e-30	SWIB/MDM2 domain
SWIB	PF02201	285 - 354	6.4e-30	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49520 AT3G19080 AT3G19080 AT3G19080 AT3G19080
fragaria_vesca	FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890
malus_domestica	MD10G1089200.v1.1
prunus_persica	Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1
pyrus_communis	pycom05g06780 pycom10g07210
rosa_chinensis	RchiOBHm_Chr6g0259201
rosa_laevigata	RLG00000014549
rosa_multiflora	Rmu_ssc0000050.1_g000095
rosa_roxburghii	Rroxscaffold_7G00206510
rosa_rugosa	Rorug05G0585700 Rorug05G0585800 Rorug05G0585900
rosa_samantha	Rh6AG102700 Rh6BG095000 Rh6BG095100 Rh6CG092000 Rh6DG086000
rosa_wichuraiana	Rw6G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	977
AccI	GTMKAC	1 cut(s)	408
AccII	CGCG	1 cut(s)	90
AciI	CCGC	8 cut(s)	72, 85, 88, 206, 209, 212, 529, 997
AclWI	GGATC	1 cut(s)	950
AcoI	YGGCCR	2 cut(s)	456, 623
AfiI	CCNNNNNNNGG	7 cut(s)	33, 34, 109, 141, 223, 502, 789
AgsI	TTSAA	6 cut(s)	293, 431, 731, 872, 1034, 1143
AjnI	CCWGG	2 cut(s)	171, 186
AluBI	AGCT	7 cut(s)	48, 94, 341, 922, 991, 1046, 1082
AluI	AGCT	7 cut(s)	48, 94, 341, 922, 991, 1046, 1082
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	1 cut(s)	950
Ama87I	CYCGRG	2 cut(s)	95, 164
AoxI	GGCC	4 cut(s)	111, 213, 456, 623
ApeKI	GCWGC	1 cut(s)	78
AspS9I	GGNCC	6 cut(s)	16, 55, 111, 145, 214, 514
AsuC2I	CCSGG	5 cut(s)	28, 35, 218, 497, 938
AsuHPI	GGTGA	1 cut(s)	248
AvaI	CYCGRG	2 cut(s)	95, 164
AvaII	GGWCC	4 cut(s)	16, 55, 145, 514
BalI	TGGCCA	2 cut(s)	458, 625
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	2 cut(s)	204, 678
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	1 cut(s)	545
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	2 cut(s)	173, 188
BclI	TGATCA	1 cut(s)	679
BcnI	CCSGG	5 cut(s)	28, 35, 218, 497, 938
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	2 cut(s)	900, 1085
BisI	GCNGC	5 cut(s)	79, 88, 207, 210, 213
BlsI	GCNGC	5 cut(s)	80, 89, 208, 211, 214
Bme1390I	CCNGG	7 cut(s)	28, 35, 173, 188, 218, 497, 938
Bme18I	GGWCC	4 cut(s)	16, 55, 145, 514
BmeT110I	CYCGRG	2 cut(s)	95, 164
BmgT120I	GGNCC	6 cut(s)	16, 55, 111, 145, 214, 514
BmiI	GGNNCC	7 cut(s)	32, 112, 146, 216, 244, 327, 516
BmrFI	CCNGG	7 cut(s)	28, 35, 173, 188, 218, 497, 938
BmsI	GCATC	2 cut(s)	193, 1142
BpiI	GAAGAC	2 cut(s)	204, 678
BplI	GAGNNNNNCTC	2 cut(s)	844, 876
BpmI	CTGGAG	2 cut(s)	846, 903
Bpu10I	CCTNAGC	1 cut(s)	44
BpuMI	CCSGG	5 cut(s)	28, 35, 218, 497, 938
Bsa29I	ATCGAT	1 cut(s)	1023
BsaJI	CCNNGG	2 cut(s)	186, 216
BsaWI	WCCGGW	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	674, 704
Bsc4I	CCNNNNNNNGG	7 cut(s)	33, 34, 109, 141, 223, 502, 789
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	329, 886
BseBI	CCWGG	2 cut(s)	173, 188
BseCI	ATCGAT	1 cut(s)	1023
BseDI	CCNNGG	2 cut(s)	186, 216
BseLI	CCNNNNNNNGG	7 cut(s)	33, 34, 109, 141, 223, 502, 789
BseMII	CTCAG	1 cut(s)	58
BseNI	ACTGG	2 cut(s)	329, 886
BseRI	GAGGAG	3 cut(s)	236, 239, 242
BseXI	GCAGC	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	4 cut(s)	113, 215, 458, 625
BshVI	ATCGAT	1 cut(s)	1023
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	2 cut(s)	95, 164
BsiSI	CCGG	7 cut(s)	28, 34, 75, 127, 218, 496, 937
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	7 cut(s)	33, 34, 109, 141, 223, 502, 789
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	4 cut(s)	113, 215, 458, 625
BsoBI	CYCGRG	2 cut(s)	95, 164
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	115, 679, 955
BspACI	CCGC	8 cut(s)	72, 85, 88, 206, 209, 212, 529, 997
BspANI	GGCC	4 cut(s)	113, 215, 458, 625
BspCNI	CTCAG	1 cut(s)	57
BspDI	ATCGAT	1 cut(s)	1023
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	7 cut(s)	32, 112, 146, 216, 244, 327, 516
BspPI	GGATC	1 cut(s)	950
BspQI	GCTCTTC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	329, 886
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	186, 216
BssMI	GATC	3 cut(s)	115, 679, 955
BssNAI	GTATAC	1 cut(s)	409
Bst1107I	GTATAC	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	173, 188
Bst4CI	ACNGT	2 cut(s)	406, 677
Bst6I	CTCTTC	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	1063
BstC8I	GCNNGC	2 cut(s)	76, 92
BstDEI	CTNAG	1 cut(s)	44
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	3 cut(s)	118, 682, 958
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	3 cut(s)	115, 679, 955
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 87, 212, 622, 1063
BstNI	CCWGG	2 cut(s)	173, 188
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	7 cut(s)	26, 33, 171, 186, 216, 495, 936
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	2 cut(s)	204, 678
BstX2I	RGATCY	1 cut(s)	955
BstXI	CCANNNNNNTGG	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	955
BstZ17I	GTATAC	1 cut(s)	409
Bsu15I	ATCGAT	1 cut(s)	1023
BsuRI	GGCC	4 cut(s)	113, 215, 458, 625
BsuTUI	ATCGAT	1 cut(s)	1023
BtsIMutI	CAGTG	2 cut(s)	682, 879
Cac8I	GCNNGC	2 cut(s)	76, 92
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	6 cut(s)	16, 55, 111, 145, 214, 514
ClaI	ATCGAT	1 cut(s)	1023
CseI	GACGC	2 cut(s)	70, 876
CviAII	CATG	2 cut(s)	557, 1121
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	3 cut(s)	117, 681, 957
DpnII	GATC	3 cut(s)	115, 679, 955
DraI	TTTAAA	4 cut(s)	400, 592, 651, 1071
EaeI	YGGCCR	2 cut(s)	456, 623
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
EciI	GGCGGA	2 cut(s)	74, 544
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	4 cut(s)	16, 55, 145, 514
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	2 cut(s)	95, 164
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	514
EcoRII	CCWGG	2 cut(s)	171, 186
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	2 cut(s)	560, 1124
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	2 cut(s)	556, 1120
FbaI	TGATCA	1 cut(s)	679
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	5 cut(s)	79, 88, 207, 210, 213
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	5 cut(s)	79, 88, 207, 210, 213
FspBI	CTAG	2 cut(s)	900, 1085
GluI	GCNGC	5 cut(s)	79, 88, 207, 210, 213
GsuI	CTGGAG	2 cut(s)	846, 903
HaeIII	GGCC	4 cut(s)	113, 215, 458, 625
HapII	CCGG	7 cut(s)	28, 34, 75, 127, 218, 496, 937
HgaI	GACGC	2 cut(s)	70, 876
Hin1II	CATG	2 cut(s)	560, 1124
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	4 cut(s)	11, 548, 1016, 1152
HpaII	CCGG	7 cut(s)	28, 34, 75, 127, 218, 496, 937
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188III	TCNNGA	8 cut(s)	22, 97, 166, 820, 863, 916, 1076, 1085
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	3 cut(s)	197, 269, 272
HpyAV	CCTTC	2 cut(s)	233, 689
HpyCH4III	ACNGT	2 cut(s)	406, 677
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	383, 511, 952
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 87, 212, 622, 1063
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	560, 1124
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	3 cut(s)	115, 679, 955
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	3 cut(s)	36, 248, 884
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	2 cut(s)	193, 1142
MaeI	CTAG	2 cut(s)	900, 1085
MaeII	ACGT	1 cut(s)	270
MalI	GATC	3 cut(s)	117, 681, 957
MboI	GATC	3 cut(s)	115, 679, 955
MflI	RGATCY	1 cut(s)	955
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	2 cut(s)	458, 625
MluCI	AATT	6 cut(s)	150, 435, 893, 946, 972, 1137
MluNI	TGGCCA	2 cut(s)	458, 625
MmeI	TCCRAC	2 cut(s)	147, 421
Mox20I	TGGCCA	2 cut(s)	458, 625
MroNI	GCCGGC	1 cut(s)	74
MscI	TGGCCA	2 cut(s)	458, 625
MseI	TTAA	6 cut(s)	273, 399, 573, 591, 650, 1070
Msp20I	TGGCCA	2 cut(s)	458, 625
MspI	CCGG	7 cut(s)	28, 34, 75, 127, 218, 496, 937
MspR9I	CCNGG	7 cut(s)	28, 35, 173, 188, 218, 497, 938
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	2 cut(s)	173, 188
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	5 cut(s)	84, 87, 212, 622, 1063
NaeI	GCCGGC	1 cut(s)	76
NciI	CCSGG	5 cut(s)	28, 35, 218, 497, 938
NdeII	GATC	3 cut(s)	115, 679, 955
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	560, 1124
NlaIV	GGNNCC	7 cut(s)	32, 112, 146, 216, 244, 327, 516
NmeAIII	GCCGAG	1 cut(s)	280
NspI	RCATGY	1 cut(s)	560
PaeR7I	CTCGAG	2 cut(s)	95, 164
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 1020
PctI	GAATGC	1 cut(s)	256
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	4 cut(s)	11, 548, 1016, 1152
PfoI	TCCNGGA	3 cut(s)	33, 495, 936
PkrI	GCNGC	5 cut(s)	80, 89, 208, 211, 214
PpuMI	RGGWCCY	1 cut(s)	514
PsiI	TTATAA	1 cut(s)	977
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	2 cut(s)	171, 186
PspGI	CCWGG	2 cut(s)	171, 186
PspN4I	GGNNCC	7 cut(s)	32, 112, 146, 216, 244, 327, 516
PspPI	GGNCC	6 cut(s)	16, 55, 111, 145, 214, 514
PspPPI	RGGWCCY	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	955
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	6 cut(s)	273, 399, 573, 591, 650, 1070
SatI	GCNGC	5 cut(s)	79, 88, 207, 210, 213
Sau3AI	GATC	3 cut(s)	115, 679, 955
Sau96I	GGNCC	6 cut(s)	16, 55, 111, 145, 214, 514
ScrFI	CCNGG	7 cut(s)	28, 35, 173, 188, 218, 497, 938
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	2 cut(s)	193, 1142
Sfr274I	CTCGAG	2 cut(s)	95, 164
SinI	GGWCC	4 cut(s)	16, 55, 145, 514
SlaI	CTCGAG	2 cut(s)	95, 164
SmlI	CTYRAG	2 cut(s)	95, 164
SmoI	CTYRAG	2 cut(s)	95, 164
Sse9I	AATT	6 cut(s)	150, 435, 893, 946, 972, 1137
SsiI	CCGC	8 cut(s)	72, 85, 88, 206, 209, 212, 529, 997
SspI	AATATT	1 cut(s)	1146
SspMI	CTAG	2 cut(s)	900, 1085
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	7 cut(s)	26, 33, 171, 186, 216, 495, 936
TaaI	ACNGT	2 cut(s)	406, 677
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	7 cut(s)	60, 96, 165, 772, 851, 1014, 1023
TasI	AATT	6 cut(s)	150, 435, 893, 946, 972, 1137
TauI	GCSGC	4 cut(s)	90, 209, 212, 215
TfiI	GAWTC	4 cut(s)	11, 548, 1016, 1152
Tru1I	TTAA	6 cut(s)	273, 399, 573, 591, 650, 1070
Tru9I	TTAA	6 cut(s)	273, 399, 573, 591, 650, 1070
TscAI	CASTG	2 cut(s)	682, 886
TseI	GCWGC	1 cut(s)	78
TspDTI	ATGAA	5 cut(s)	561, 611, 657, 674, 1052
TspGWI	ACGGA	2 cut(s)	361, 805
TspRI	CASTG	2 cut(s)	682, 886
VpaK11BI	GGWCC	4 cut(s)	16, 55, 145, 514
XagI	CCTNNNNNAGG	1 cut(s)	139
XbaI	TCTAGA	1 cut(s)	1084
XceI	RCATGY	1 cut(s)	560
XhoI	CTCGAG	2 cut(s)	95, 164
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	2 cut(s)	900, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.