Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003341

Physical Location & Seq

Genomic Coordinates Reverse (-)

14933659 .. 14935113

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG095000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCTATTGAATGGTTTTACTCTGGTTTGCGGTTGGCTGGTCTTTATTTTTTCTCATGTATCATCTTATCAAGTAGGTCTGCTAAAGTGGATAAAGAAGTCAAGAAAAGGGGAGGTGGCTTTACCAAGTTATCAAGCCTTTCTCCAGAACTTCAAAAAATCACTGGAGCGTCAGAATTGGCTAGAACGGAGGTTGTCAAGAAGCTTTGGAACTATATCCGGGAGAACAATTTGCAAGATCCAAATAATAGGAGAATTATAATATGTGATGAGCTGTTCCGCACCCTTTTTGATGTCGATTCTATCGATATGTTTCAAATGAATAAAGCTCTGTCCAAGCACATATTGCCTTTAAATCAAGAAGCAGCTCTAGACAACACTTCACAAACAGAGAAGCAGTCTGAACATGAGCAAGAAGATTCAGATGAAGCTGACCACGACGAAAAACGGCAGAAGAAGGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

155

Amino Acids

17.86

Weight (kDa)

5.7

Isoelectric Point (pI)

67.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	46 - 115	1.1e-30	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49520 AT3G19080 AT3G19080 AT3G19080 AT3G19080
fragaria_vesca	FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890
malus_domestica	MD10G1089200.v1.1
prunus_persica	Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1
pyrus_communis	pycom05g06780 pycom10g07210
rosa_chinensis	RchiOBHm_Chr6g0259201
rosa_laevigata	RLG00000014549
rosa_multiflora	Rmu_ssc0000050.1_g000095
rosa_roxburghii	Rroxscaffold_7G00206510
rosa_rugosa	Rorug05G0585700 Rorug05G0585800 Rorug05G0585900
rosa_samantha	Rh6AG102700 Rh6BG095000 Rh6BG095100 Rh6CG092000 Rh6DG086000
rosa_wichuraiana	Rw6G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AciI	CCGC	2 cut(s)	31, 280
AclWI	GGATC	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	11, 155, 317
AluBI	AGCT	5 cut(s)	205, 274, 329, 368, 431
AluI	AGCT	5 cut(s)	205, 274, 329, 368, 431
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	464
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	2 cut(s)	183, 371
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	221
BpmI	CTGGAG	2 cut(s)	129, 186
BpuMI	CCSGG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	377
BshVI	ATCGAT	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	456
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	2 cut(s)	31, 280
BspDI	ATCGAT	1 cut(s)	306
BspPI	GGATC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	238
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	306
BsuTUI	ATCGAT	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	306
CseI	GACGC	1 cut(s)	159
CviAII	CATG	2 cut(s)	57, 407
CviJI	RGCY	9 cut(s)	38, 120, 138, 182, 205, 274, 329, 368, 431
CviKI_1	RGCY	9 cut(s)	38, 120, 138, 182, 205, 274, 329, 368, 431
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DraI	TTTAAA	1 cut(s)	354
FaeI	CATG	2 cut(s)	60, 410
FaiI	YATR	7 cut(s)	58, 216, 260, 265, 311, 344, 408
FatI	CATG	2 cut(s)	56, 406
Fnu4HI	GCNGC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	2 cut(s)	183, 371
GluI	GCNGC	1 cut(s)	366
GsuI	CTGGAG	2 cut(s)	129, 186
HapII	CCGG	1 cut(s)	220
HgaI	GACGC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	60, 410
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	2 cut(s)	299, 419
HpaII	CCGG	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	175, 403, 424
Hpy188III	TCNNGA	5 cut(s)	103, 146, 199, 359, 371
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	1 cut(s)	451
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
Hsp92II	CATG	2 cut(s)	60, 410
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	5 cut(s)	9, 24, 150, 159, 233
Lsp1109I	GCAGC	1 cut(s)	377
MaeI	CTAG	2 cut(s)	183, 371
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	2 cut(s)	428, 466
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	3 cut(s)	176, 229, 255
MnlI	CCTC	2 cut(s)	107, 184
MseI	TTAA	1 cut(s)	353
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	346
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	60, 410
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	299, 419
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	1 cut(s)	367
PsiI	TTATAA	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	8 cut(s)	80, 118, 195, 207, 276, 331, 370, 433
Sse9I	AATT	3 cut(s)	176, 229, 255
SsiI	CCGC	2 cut(s)	31, 280
SspMI	CTAG	2 cut(s)	183, 371
StyD4I	CCNGG	1 cut(s)	219
TaqI	TCGA	2 cut(s)	297, 306
TasI	AATT	3 cut(s)	176, 229, 255
TfiI	GAWTC	2 cut(s)	299, 419
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	335, 441
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	169
XbaI	TCTAGA	1 cut(s)	370
XspI	CTAG	2 cut(s)	183, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.