AT1G50620

PHD finger

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
18748241 .. 18751338
3098 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50620.1

Sequence Viewer

Length: 1890 bp
ATGGATGTGGCCATTAGTGATGATGTACCGGTGAATCTCGAATCGGTTGAAGAAAAGAGAGATGAAGAAACTGTGGAAGAATCGCCGGTGAAGAAGAAGAAGCCACGTTTTGATGAGGAAGTGAATAGAGTGGCGGAGATTGTATTGGTGTTATCGGCATTGCGGAAGATTCGAGGTGGGAAACCCCCGACGGAATTGGAGATTGATCTAATGGTGGAAGCTAAATCGAAATTGGTTGACATGTGTCAAGAGTTTACTCCCAAGGATATTATTGGTGTTGATGCTATTGGAGCTGTCATTGAAGATCTCGGTTTCAATGGTAAGCTTAAGGATCAGAGATTAGGGTTTCGAGCTCCTAAATTAACCATCTCTGAGAAGCTATCTCTTGGCAAGAGAAAGATGGAGGAATTGAAAAAGAATCCAGTAGTATCAACTACATCTACATCTCCAGCAGTAAATAATGTTTCTATGGCGCATCAGTGGCCTAATAGCGAGATGAAGGCATCCGCTAGTTCTGTTAATGCATCTGGAAGCCATTACGTTAGGGAAGCGTCAGGAATAACACAAGCTAGAATGGAGAGACCACAGTTTAAGTCAGATTTGCATACCGGTACTTCTCAGGGACCAGCAGTTCCTGCCGGAAATTATTTTGGGAATACTACAACTTGGTCTGCCCAACCTCATTCCAGTACCTCCACCATATCATTTGGTACTGCATCAGATAGCAAGGTTCCTGTTCCGAGTTCTTCCAGAATCTCAGATCCGAGCTTTAGACCATTTATGTCTCAAACTCCACCAGGTGCATTCCCAGGCATGAAAGGAGCAACTTATGGTCAAACTTCTTCACCTTTTGGAAACAACAACCATGCTGAAATTGCTAAGTTAATCCACAAAGTTCTGCAACCGCGGGCTAAACAAAATCTCTTGTGGAACCCACCTTCAAGAGAATACATGAGTAAAGCAATGACATGCCAAATATGTCAAGGAACTATCAATGAAATAGAAACGGTGCTAATCTGTGATGCTTGTGAAAAGGGATATCACTTGAAATGTCTACATGCTCACAATATAAAAGGTGTTCCGAAATCTGAATGGCATTGCTCAAGATGTGTGCAATTATACAATGGCAAGTCTTTTCCTCCTAAATACGGCCGTGTCATGAGAAGCGCCACTACAGCAAAAATGTCTTCTAGTACAGCCGAAGTTCAATTACCCGCAGAGAAGGGGGTTGGTAAAATGGATCAAAAGGTTAGTCAAGAGGGAATGCCACATCTCGAGACAGCAAAACCAACTAAGGATTCAGCTATGGAACAAACAGTTGAAGCTGAAGATGTAGCTATGAATCCAATAGTTGAAAAAGCTATGAGTGAAATGGTGGAAGCTGAAGGTGCAGCTATTAATCCAATAGTTGAAGCTGAAGATGGAGCTATGAATCCAATAGTTGAAAAAGCAATGAGTCAAATAGTTGAAGCTGAAGATGCAGCTATTAATCAAGCAGTTGATGCTAACTTTCAAACACAAGCTCCCACAGGAAACGATGATGCTGAGAGTGATGATCCTTCGGAACCAGTATCTCACTCAGAGACTCTTAATCCTCCAGAACTAGAGAAAAAAGAAGTTATGAGGAAAGATGCTACTGAGAGATCTGTTTCCGCAGATTGTCAAGATAAAAACTCAAAGATCATAGCGGAATCCTCATTACAAGAGGAGATTTCAGCTTCTCAGACAGAGAACTCACCAACCCAGCCTCCTTCGCAATCTGACACAGATCATTCCCAACAGCAGAAGACGACACCAAATGTCGAAGAGGAGAAATCAGCTTCTCAGGCAGAGAACTCACCAACCCAGCCTCCTTCGCAATCCAACACAGATCATTTCCCAACAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

629

Amino Acids

68.36

Weight (kDa)

5.23

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7797 PF25073 27 - 84 1.7e-23 Domain of unknown function (DUF7797)
PHD PF00628 324 - 370 2.8e-07 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1054
AccII CGCG 1 cut(s) 907
AciI CCGC 8 cut(s) 134, 163, 507, 905, 907, 1215, 1653, 1688
AclWI GGATC 4 cut(s) 339, 755, 1248, 1550
AcoI YGGCCR 2 cut(s) 9, 1150
AcuI CTGAAG 4 cut(s) 1347, 1404, 1437, 1494
AdeI CACNNNGTG 1 cut(s) 800
AfaI GTAC 5 cut(s) 27, 613, 691, 712, 1195
AfiI CCNNNNNNNGG 1 cut(s) 1148
AflII CTTAAG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 240
AgeI ACCGGT 2 cut(s) 28, 608
AjnI CCWGG 2 cut(s) 796, 808
AjuI GAANNNNNNNTTGG 2 cut(s) 1282, 1314
AloI GAACNNNNNNTCC 2 cut(s) 615, 647
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 4 cut(s) 574, 789, 1271, 1577
AlwI GGATC 4 cut(s) 339, 755, 1248, 1550
AlwNI CAGNNNCTG 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 1274
AoxI GGCC 3 cut(s) 9, 482, 1150
ApeKI GCWGC 2 cut(s) 1391, 1481
ArsI GACNNNNNNTTYG 2 cut(s) 1237, 1269
AseI ATTAAT 2 cut(s) 1398, 1488
AsiGI ACCGGT 2 cut(s) 28, 608
AspLEI GCGC 2 cut(s) 475, 1169
AspS9I GGNCC 1 cut(s) 623
AsuHPI GGTGA 5 cut(s) 43, 100, 837, 1728, 1830
AvaI CYCGRG 1 cut(s) 1274
AvaII GGWCC 1 cut(s) 623
BalI TGGCCA 1 cut(s) 11
BanII GRGCYC 1 cut(s) 355
BarI GAAGNNNNNNTAC 4 cut(s) 1156, 1188, 1194, 1226
BbsI GAAGAC 2 cut(s) 1179, 1793
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 2 cut(s) 1403, 1493
BccI CCATC 3 cut(s) 374, 394, 1415
BceAI ACGGC 2 cut(s) 1137, 1165
BciT130I CCWGG 2 cut(s) 798, 810
BcoDI GTCTC 4 cut(s) 574, 789, 1271, 1577
BfaI CTAG 4 cut(s) 510, 570, 1191, 1604
BfmI CTRYAG 1 cut(s) 1173
BfoI RGCGCY 1 cut(s) 1170
BfrI CTTAAG 1 cut(s) 326
BglII AGATCT 2 cut(s) 304, 1643
BisI GCNGC 2 cut(s) 1392, 1482
BlsI GCNGC 2 cut(s) 1393, 1483
Bme1390I CCNGG 2 cut(s) 798, 810
Bme18I GGWCC 1 cut(s) 623
BmeT110I CYCGRG 1 cut(s) 1274
BmgT120I GGNCC 1 cut(s) 623
BmiI GGNNCC 4 cut(s) 624, 732, 932, 1566
BmrFI CCNGG 2 cut(s) 798, 810
BoxI GACNNNNGTC 1 cut(s) 243
BpiI GAAGAC 2 cut(s) 1179, 1793
BpmI CTGGAG 2 cut(s) 432, 1581
BpuEI CTTGAG 1 cut(s) 1087
BsaI GGTCTC 1 cut(s) 574
BsaJI CCNNGG 3 cut(s) 261, 808, 905
BsaWI WCCGGW 2 cut(s) 28, 608
BsaXI ACNNNNNCTCC 6 cut(s) 1507, 1537, 1732, 1762, 1834, 1864
Bsc4I CCNNNNNNNGG 1 cut(s) 1148
Bse118I RCCGGY 3 cut(s) 28, 85, 608
Bse1I ACTGG 3 cut(s) 422, 687, 1568
Bse3DI GCAATG 4 cut(s) 158, 969, 1096, 1458
BseBI CCWGG 2 cut(s) 798, 810
BseDI CCNNGG 3 cut(s) 261, 808, 905
BseGI GGATG 2 cut(s) 10, 503
BseLI CCNNNNNNNGG 1 cut(s) 1148
BseMI GCAATG 4 cut(s) 158, 969, 1096, 1458
BseMII CTCAG 8 cut(s) 363, 632, 771, 1536, 1593, 1629, 1736, 1838
BseNI ACTGG 3 cut(s) 422, 687, 1568
BseRI GAGGAG 2 cut(s) 1721, 1823
BseX3I CGGCCG 1 cut(s) 1150
BseXI GCAGC 2 cut(s) 1403, 1493
BseYI CCCAGC 2 cut(s) 1743, 1845
BsgI GTGCAG 1 cut(s) 1410
Bsh1236I CGCG 1 cut(s) 907
Bsh1285I CGRYCG 1 cut(s) 1153
BshFI GGCC 3 cut(s) 11, 484, 1152
BshTI ACCGGT 2 cut(s) 28, 608
BsiEI CGRYCG 1 cut(s) 1153
BsiHKAI GWGCWC 1 cut(s) 355
BsiHKCI CYCGRG 1 cut(s) 1274
BsiSI CCGG 4 cut(s) 29, 86, 609, 639
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 1 cut(s) 1148
BsmAI GTCTC 4 cut(s) 574, 789, 1271, 1577
BsmFI GGGAC 1 cut(s) 636
BsmI GAATGC 2 cut(s) 803, 1269
BsnI GGCC 3 cut(s) 11, 484, 1152
Bso31I GGTCTC 1 cut(s) 574
BsoBI CYCGRG 1 cut(s) 1274
Bsp1286I GDGCHC 1 cut(s) 355
BspACI CCGC 8 cut(s) 134, 163, 507, 905, 907, 1215, 1653, 1688
BspANI GGCC 3 cut(s) 11, 484, 1152
BspCNI CTCAG 8 cut(s) 364, 631, 770, 1537, 1592, 1630, 1735, 1837
BspFNI CGCG 1 cut(s) 907
BspHI TCATGA 1 cut(s) 1158
BspLI GGNNCC 4 cut(s) 624, 732, 932, 1566
BspPI GGATC 4 cut(s) 339, 755, 1248, 1550
BspTI CTTAAG 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 574
BsrDI GCAATG 4 cut(s) 158, 969, 1096, 1458
BsrFI RCCGGY 3 cut(s) 28, 85, 608
BsrI ACTGG 3 cut(s) 422, 687, 1568
BssAI RCCGGY 3 cut(s) 28, 85, 608
BssECI CCNNGG 3 cut(s) 261, 808, 905
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 798, 810
Bst4CI ACNGT 4 cut(s) 73, 588, 1009, 1318
Bst6I CTCTTC 1 cut(s) 1800
BstAFI CTTAAG 1 cut(s) 326
BstAPI GCANNNNNTGC 2 cut(s) 635, 1502
BstC8I GCNNGC 1 cut(s) 909
BstDSI CCRYGG 1 cut(s) 905
BstF5I GGATG 2 cut(s) 10, 503
BstFNI CGCG 1 cut(s) 907
BstH2I RGCGCY 1 cut(s) 1170
BstHHI GCGC 2 cut(s) 475, 1169
BstMAI GTCTC 4 cut(s) 574, 789, 1271, 1577
BstMCI CGRYCG 1 cut(s) 1153
BstNI CCWGG 2 cut(s) 798, 810
BstNSI RCATGY 3 cut(s) 244, 972, 1061
BstPAI GACNNNNGTC 1 cut(s) 243
BstSCI CCNGG 2 cut(s) 796, 808
BstSFI CTRYAG 1 cut(s) 1173
BstUI CGCG 1 cut(s) 907
BstV1I GCAGC 2 cut(s) 1403, 1493
BstV2I GAAGAC 2 cut(s) 1179, 1793
BstX2I RGATCY 3 cut(s) 304, 760, 1643
BstYI RGATCY 3 cut(s) 304, 760, 1643
BstZI CGGCCG 1 cut(s) 1150
BsuRI GGCC 3 cut(s) 11, 484, 1152
BtgI CCRYGG 1 cut(s) 905
BtsCI GGATG 2 cut(s) 10, 503
BtsIMutI CAGTG 1 cut(s) 485
Cac8I GCNNGC 1 cut(s) 909
CaiI CAGNNNCTG 1 cut(s) 635
CciI TCATGA 1 cut(s) 1158
CfoI GCGC 2 cut(s) 475, 1169
Cfr10I RCCGGY 3 cut(s) 28, 85, 608
Cfr13I GGNCC 1 cut(s) 623
Cfr42I CCGCGG 1 cut(s) 908
CseI GACGC 1 cut(s) 540
CsiI ACCWGGT 1 cut(s) 796
Csp6I GTAC 5 cut(s) 26, 612, 690, 711, 1194
CspAI ACCGGT 2 cut(s) 28, 608
CviAII CATG 7 cut(s) 241, 814, 866, 952, 969, 1058, 1159
CviQI GTAC 5 cut(s) 26, 612, 690, 711, 1194
DraIII CACNNNGTG 1 cut(s) 800
EaeI YGGCCR 2 cut(s) 9, 1150
EagI CGGCCG 1 cut(s) 1150
Eam1104I CTCTTC 1 cut(s) 1800
EarI CTCTTC 1 cut(s) 1800
EciI GGCGGA 1 cut(s) 149
Ecl136II GAGCTC 1 cut(s) 353
EclXI CGGCCG 1 cut(s) 1150
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 574
Eco32I GATATC 1 cut(s) 1040
Eco47I GGWCC 1 cut(s) 623
Eco52I CGGCCG 1 cut(s) 1150
Eco53kI GAGCTC 1 cut(s) 353
Eco57I CTGAAG 4 cut(s) 1347, 1404, 1437, 1494
Eco88I CYCGRG 1 cut(s) 1274
EcoICRI GAGCTC 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 796, 808
EcoRV GATATC 1 cut(s) 1040
EcoT14I CCWWGG 1 cut(s) 261
EcoT22I ATGCAT 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 7 cut(s) 244, 817, 869, 955, 972, 1061, 1162
FaqI GGGAC 1 cut(s) 636
FatI CATG 7 cut(s) 240, 813, 865, 951, 968, 1057, 1158
FauI CCCGC 2 cut(s) 900, 1222
FblI GTMKAC 1 cut(s) 1054
Fnu4HI GCNGC 2 cut(s) 1392, 1482
FokI GGATG 2 cut(s) 17, 490
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 2 cut(s) 1392, 1482
FspBI CTAG 4 cut(s) 510, 570, 1191, 1604
GlaI GCGC 2 cut(s) 474, 1168
GluI GCNGC 2 cut(s) 1392, 1482
GsaI CCCAGC 2 cut(s) 1747, 1849
GsuI CTGGAG 2 cut(s) 432, 1581
HaeII RGCGCY 1 cut(s) 1170
HaeIII GGCC 3 cut(s) 11, 484, 1152
HapII CCGG 4 cut(s) 29, 86, 609, 639
HgaI GACGC 1 cut(s) 540
HhaI GCGC 2 cut(s) 475, 1169
Hin1II CATG 7 cut(s) 244, 817, 869, 955, 972, 1061, 1162
Hin6I GCGC 2 cut(s) 473, 1167
HinP1I GCGC 2 cut(s) 473, 1167
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 323
HpaII CCGG 4 cut(s) 29, 86, 609, 639
HphI GGTGA 5 cut(s) 43, 100, 837, 1728, 1830
Hpy166II GTNNAC 3 cut(s) 238, 255, 1055
Hpy8I GTNNAC 3 cut(s) 238, 255, 1055
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 7 cut(s) 493, 948, 1216, 1379, 1569, 1761, 1863
HpyCH4III ACNGT 4 cut(s) 73, 588, 1009, 1318
HpyCH4IV ACGT 2 cut(s) 106, 540
HpyCH4V TGCA 8 cut(s) 524, 604, 716, 803, 901, 1114, 1391, 1481
HpySE526I ACGT 2 cut(s) 106, 540
Hsp92II CATG 7 cut(s) 244, 817, 869, 955, 972, 1061, 1162
HspAI GCGC 2 cut(s) 473, 1167
KspI CCGCGG 1 cut(s) 908
LmnI GCTCC 5 cut(s) 290, 358, 821, 1424, 1528
Lsp1109I GCAGC 2 cut(s) 1403, 1493
MabI ACCWGGT 1 cut(s) 796
MaeI CTAG 4 cut(s) 510, 570, 1191, 1604
MaeII ACGT 2 cut(s) 106, 540
MflI RGATCY 3 cut(s) 304, 760, 1643
MhlI GDGCHC 1 cut(s) 355
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 8 cut(s) 194, 230, 359, 407, 643, 873, 1115, 1208
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 2 cut(s) 1465, 1579
MmeI TCCRAC 1 cut(s) 1887
Mox20I TGGCCA 1 cut(s) 11
Mph1103I ATGCAT 1 cut(s) 526
MscI TGGCCA 1 cut(s) 11
MseI TTAA 8 cut(s) 327, 362, 519, 591, 884, 1398, 1488, 1590
Msp20I TGGCCA 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 907
MspCI CTTAAG 1 cut(s) 326
MspI CCGG 4 cut(s) 29, 86, 609, 639
MspR9I CCNGG 2 cut(s) 798, 810
Mva1269I GAATGC 2 cut(s) 803, 1269
MvaI CCWGG 2 cut(s) 798, 810
MvnI CGCG 1 cut(s) 907
NlaIII CATG 7 cut(s) 244, 817, 869, 955, 972, 1061, 1162
NlaIV GGNNCC 4 cut(s) 624, 732, 932, 1566
NsiI ATGCAT 1 cut(s) 526
NspI RCATGY 3 cut(s) 244, 972, 1061
PaeR7I CTCGAG 1 cut(s) 1274
PagI TCATGA 1 cut(s) 1158
PciI ACATGT 1 cut(s) 240
PctI GAATGC 2 cut(s) 803, 1269
PinAI ACCGGT 2 cut(s) 28, 608
PkrI GCNGC 2 cut(s) 1393, 1483
PleI GAGTC 2 cut(s) 1464, 1579
PpsI GAGTC 2 cut(s) 1464, 1579
PscI ACATGT 1 cut(s) 240
PshAI GACNNNNGTC 1 cut(s) 243
PshBI ATTAAT 2 cut(s) 1398, 1488
Psp124BI GAGCTC 1 cut(s) 355
Psp6I CCWGG 2 cut(s) 796, 808
PspFI CCCAGC 2 cut(s) 1743, 1845
PspGI CCWGG 2 cut(s) 796, 808
PspN4I GGNNCC 4 cut(s) 624, 732, 932, 1566
PspPI GGNCC 1 cut(s) 623
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 3 cut(s) 304, 760, 1643
RsaI GTAC 5 cut(s) 27, 613, 691, 712, 1195
RsaNI GTAC 5 cut(s) 26, 612, 690, 711, 1194
SacI GAGCTC 1 cut(s) 355
SacII CCGCGG 1 cut(s) 908
SaqAI TTAA 8 cut(s) 327, 362, 519, 591, 884, 1398, 1488, 1590
SatI GCNGC 2 cut(s) 1392, 1482
Sau96I GGNCC 1 cut(s) 623
SchI GAGTC 2 cut(s) 1465, 1579
ScrFI CCNGG 2 cut(s) 798, 810
SduI GDGCHC 1 cut(s) 355
SexAI ACCWGGT 1 cut(s) 796
SfcI CTRYAG 1 cut(s) 1173
Sfr274I CTCGAG 1 cut(s) 1274
Sfr303I CCGCGG 1 cut(s) 908
SgrAI CRCCGGYG 1 cut(s) 85
SgrBI CCGCGG 1 cut(s) 908
SinI GGWCC 1 cut(s) 623
SlaI CTCGAG 1 cut(s) 1274
SmlI CTYRAG 3 cut(s) 326, 1102, 1274
SmoI CTYRAG 3 cut(s) 326, 1102, 1274
Sse9I AATT 8 cut(s) 194, 230, 359, 407, 643, 873, 1115, 1208
SsiI CCGC 8 cut(s) 134, 163, 507, 905, 907, 1215, 1653, 1688
SspMI CTAG 4 cut(s) 510, 570, 1191, 1604
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 2 cut(s) 796, 808
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 4 cut(s) 73, 588, 1009, 1318
TaiI ACGT 2 cut(s) 109, 543
TaqI TCGA 6 cut(s) 39, 172, 227, 349, 1275, 1803
TasI AATT 8 cut(s) 194, 230, 359, 407, 643, 873, 1115, 1208
TatI WGTACW 1 cut(s) 1193
Tru1I TTAA 8 cut(s) 327, 362, 519, 591, 884, 1398, 1488, 1590
Tru9I TTAA 8 cut(s) 327, 362, 519, 591, 884, 1398, 1488, 1590
TscAI CASTG 1 cut(s) 485
TseI GCWGC 2 cut(s) 1391, 1481
TspDTI ATGAA 6 cut(s) 78, 512, 830, 1011, 1355, 1445
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 485
Vha464I CTTAAG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 623
VspI ATTAAT 2 cut(s) 1398, 1488
XceI RCATGY 3 cut(s) 244, 972, 1061
XhoI CTCGAG 1 cut(s) 1274
XmiI GTMKAC 1 cut(s) 1054
XspI CTAG 4 cut(s) 510, 570, 1191, 1604
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.