PHD zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G50620 AT3G20280 AT3G20280 AT3G20280 AT3G20280 AT3G20280 |
| fragaria_vesca | FvH4_3g23572 FvH4_3g23572 FvH4_3g23572 FvH4_3g23572 |
| malus_domestica | MD03G1193000.v1.1 MD11G1209200.v1.1 |
| prunus_persica | Prupe.4G224000_v2.0.a1 Prupe.4G224000_v2.0.a1 |
| pyrus_communis | pycom03g14530 pycom03g14540 pycom11g18420 |
| rosa_chinensis | RchiOBHm_Chr5g0041571 |
| rosa_laevigata | RLG00000034083 |
| rosa_multiflora | Rmu_sc0003051.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00038930 |
| rosa_rugosa | Rorug05G0193800 Rorug05G0193900 Rorug05G0193900 |
| rosa_samantha | Rh5AG279500 Rh5BG283900 Rh5BG284800 Rh5CG316800 Rh5DG293600 |
| rosa_wichuraiana | Rw5G026310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 1263 |
| Acc16I | TGCGCA | 2 cut(s) | 429, 2538 |
| AccB1I | GGYRCC | 3 cut(s) | 22, 56, 856 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 971, 2492 |
| AccI | GTMKAC | 2 cut(s) | 158, 824 |
| AciI | CCGC | 8 cut(s) | 14, 63, 137, 180, 374, 435, 500, 2912 |
| AcsI | RAATTY | 7 cut(s) | 171, 781, 940, 1257, 1890, 2226, 2500 |
| AcuI | CTGAAG | 3 cut(s) | 1014, 1866, 2744 |
| AcyI | GRCGYC | 2 cut(s) | 23, 57 |
| AfaI | GTAC | 7 cut(s) | 477, 774, 1384, 1414, 1444, 2086, 2882 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 101, 102, 206, 971, 1328, 1691, 2105, 2300, 2492 |
| AflIII | ACRYGT | 2 cut(s) | 1229, 1537 |
| AgeI | ACCGGT | 1 cut(s) | 3016 |
| AhlI | ACTAGT | 1 cut(s) | 2549 |
| AjnI | CCWGG | 3 cut(s) | 664, 982, 2299 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 83, 115, 853, 885 |
| Alw21I | GWGCWC | 3 cut(s) | 814, 1237, 2485 |
| Alw26I | GTCTC | 3 cut(s) | 573, 1756, 1963 |
| Alw44I | GTGCAC | 1 cut(s) | 1233 |
| Ama87I | CYCGRG | 2 cut(s) | 1263, 2136 |
| AoxI | GGCC | 3 cut(s) | 41, 75, 104 |
| ApaI | GGGCCC | 2 cut(s) | 79, 108 |
| ApaLI | GTGCAC | 1 cut(s) | 1233 |
| ApeKI | GCWGC | 6 cut(s) | 425, 437, 563, 926, 1090, 2271 |
| ApoI | RAATTY | 7 cut(s) | 171, 781, 940, 1257, 1890, 2226, 2500 |
| AsiGI | ACCGGT | 1 cut(s) | 3016 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 685, 2063, 2640, 2940 |
| AspA2I | CCTAGG | 1 cut(s) | 26 |
| AspLEI | GCGC | 4 cut(s) | 25, 59, 430, 2539 |
| AspS9I | GGNCC | 8 cut(s) | 75, 76, 104, 105, 356, 842, 1372, 2927 |
| AsuHPI | GGTGA | 6 cut(s) | 725, 1233, 1280, 1928, 1986, 2645 |
| AsuII | TTCGAA | 1 cut(s) | 1613 |
| AvaI | CYCGRG | 2 cut(s) | 1263, 2136 |
| AvaII | GGWCC | 4 cut(s) | 356, 842, 1372, 2927 |
| AvrII | CCTAGG | 1 cut(s) | 26 |
| AxyI | CCTNAGG | 1 cut(s) | 1480 |
| BaeGI | GKGCMC | 5 cut(s) | 79, 108, 1237, 1586, 2581 |
| BamHI | GGATCC | 2 cut(s) | 743, 1110 |
| BanI | GGYRCC | 3 cut(s) | 22, 56, 856 |
| BanII | GRGCYC | 3 cut(s) | 79, 108, 2485 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 1375, 1405, 1407, 1435, 1437, 1467 |
| BauI | CACGAG | 1 cut(s) | 930 |
| BbsI | GAAGAC | 1 cut(s) | 990 |
| Bbv12I | GWGCWC | 3 cut(s) | 814, 1237, 2485 |
| BbvI | GCAGC | 6 cut(s) | 412, 424, 575, 938, 1077, 2283 |
| BceAI | ACGGC | 2 cut(s) | 27, 70 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 491, 525, 768, 802, 1593, 1627, 2831, 2865 |
| BciT130I | CCWGG | 3 cut(s) | 666, 984, 2301 |
| BclI | TGATCA | 1 cut(s) | 1096 |
| BcoDI | GTCTC | 3 cut(s) | 573, 1756, 1963 |
| BcuI | ACTAGT | 1 cut(s) | 2549 |
| BfoI | RGCGCY | 2 cut(s) | 26, 60 |
| BisI | GCNGC | 7 cut(s) | 426, 438, 500, 564, 927, 1091, 2272 |
| BlnI | CCTAGG | 1 cut(s) | 26 |
| BlpI | GCTNAGC | 1 cut(s) | 324 |
| BlsI | GCNGC | 7 cut(s) | 427, 439, 501, 565, 928, 1092, 2273 |
| BmcAI | AGTACT | 1 cut(s) | 1444 |
| Bme1390I | CCNGG | 3 cut(s) | 666, 984, 2301 |
| Bme18I | GGWCC | 4 cut(s) | 356, 842, 1372, 2927 |
| BmeT110I | CYCGRG | 2 cut(s) | 1263, 2136 |
| BmgT120I | GGNCC | 8 cut(s) | 75, 76, 104, 105, 356, 842, 1372, 2927 |
| BmrFI | CCNGG | 3 cut(s) | 666, 984, 2301 |
| BmrI | ACTGGG | 3 cut(s) | 73, 2796, 3070 |
| BmsI | GCATC | 6 cut(s) | 274, 1179, 1192, 1277, 1801, 2203 |
| BmuI | ACTGGG | 3 cut(s) | 73, 2796, 3070 |
| BoxI | GACNNNNGTC | 2 cut(s) | 994, 2529 |
| BpiI | GAAGAC | 1 cut(s) | 990 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 324 |
| Bpu14I | TTCGAA | 1 cut(s) | 1613 |
| BpuEI | CTTGAG | 1 cut(s) | 819 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1169, 1815, 2022 |
| BsaHI | GRCGYC | 2 cut(s) | 23, 57 |
| BsaI | GGTCTC | 2 cut(s) | 1756, 1963 |
| BsaJI | CCNNGG | 5 cut(s) | 26, 162, 264, 490, 2527 |
| BsaWI | WCCGGW | 1 cut(s) | 3016 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 580, 610, 2173, 2203, 2380, 2410 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 101, 102, 206, 971, 1328, 1691, 2105, 2300, 2492 |
| Bse118I | RCCGGY | 3 cut(s) | 59, 1364, 3016 |
| Bse21I | CCTNAGG | 1 cut(s) | 1480 |
| Bse3DI | GCAATG | 1 cut(s) | 1309 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1169, 1815, 2022 |
| BseBI | CCWGG | 3 cut(s) | 666, 984, 2301 |
| BseDI | CCNNGG | 5 cut(s) | 26, 162, 264, 490, 2527 |
| BseGI | GGATG | 8 cut(s) | 289, 412, 796, 1099, 1655, 1681, 1888, 1952 |
| BseJI | GATNNNNATC | 3 cut(s) | 1169, 1815, 2022 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 101, 102, 206, 971, 1328, 1691, 2105, 2300, 2492 |
| BseMI | GCAATG | 1 cut(s) | 1309 |
| BseMII | CTCAG | 3 cut(s) | 1494, 2456, 2472 |
| BseRI | GAGGAG | 4 cut(s) | 233, 561, 909, 2937 |
| BseSI | GKGCMC | 5 cut(s) | 79, 108, 1237, 1586, 2581 |
| BseXI | GCAGC | 6 cut(s) | 412, 424, 575, 938, 1077, 2283 |
| BseYI | CCCAGC | 1 cut(s) | 697 |
| BsgI | GTGCAG | 3 cut(s) | 522, 591, 1264 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3017 |
| BshFI | GGCC | 3 cut(s) | 43, 77, 106 |
| BshNI | GGYRCC | 3 cut(s) | 22, 56, 856 |
| BshTI | ACCGGT | 1 cut(s) | 3016 |
| BsiEI | CGRYCG | 1 cut(s) | 3017 |
| BsiHKAI | GWGCWC | 3 cut(s) | 814, 1237, 2485 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1263, 2136 |
| BsiSI | CCGG | 4 cut(s) | 60, 200, 1365, 3017 |
| BslFI | GGGAC | 7 cut(s) | 134, 342, 1358, 1388, 1418, 1433, 1864 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 101, 102, 206, 971, 1328, 1691, 2105, 2300, 2492 |
| BsmAI | GTCTC | 3 cut(s) | 573, 1756, 1963 |
| BsmBI | CGTCTC | 1 cut(s) | 573 |
| BsmFI | GGGAC | 7 cut(s) | 134, 342, 1358, 1388, 1418, 1433, 1864 |
| BsmI | GAATGC | 1 cut(s) | 701 |
| BsnI | GGCC | 3 cut(s) | 43, 77, 106 |
| Bso31I | GGTCTC | 2 cut(s) | 1756, 1963 |
| BsoBI | CYCGRG | 2 cut(s) | 1263, 2136 |
| Bsp119I | TTCGAA | 1 cut(s) | 1613 |
| Bsp120I | GGGCCC | 2 cut(s) | 75, 104 |
| Bsp1286I | GDGCHC | 7 cut(s) | 79, 108, 814, 1237, 1586, 2485, 2581 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 324 |
| Bsp19I | CCATGG | 2 cut(s) | 162, 490 |
| BspACI | CCGC | 8 cut(s) | 14, 63, 137, 180, 374, 435, 500, 2912 |
| BspANI | GGCC | 3 cut(s) | 43, 77, 106 |
| BspCNI | CTCAG | 3 cut(s) | 1493, 2455, 2471 |
| BspHI | TCATGA | 1 cut(s) | 2893 |
| BspT104I | TTCGAA | 1 cut(s) | 1613 |
| BspT107I | GGYRCC | 3 cut(s) | 22, 56, 856 |
| BspTNI | GGTCTC | 2 cut(s) | 1756, 1963 |
| BsrDI | GCAATG | 1 cut(s) | 1309 |
| BsrFI | RCCGGY | 3 cut(s) | 59, 1364, 3016 |
| BssAI | RCCGGY | 3 cut(s) | 59, 1364, 3016 |
| BssECI | CCNNGG | 5 cut(s) | 26, 162, 264, 490, 2527 |
| BssNI | GRCGYC | 2 cut(s) | 23, 57 |
| BssSI | CACGAG | 1 cut(s) | 930 |
| BssT1I | CCWWGG | 5 cut(s) | 26, 162, 264, 490, 2527 |
| Bst2BI | CACGAG | 1 cut(s) | 930 |
| Bst2UI | CCWGG | 3 cut(s) | 666, 984, 2301 |
| Bst6I | CTCTTC | 5 cut(s) | 32, 122, 676, 2301, 2726 |
| BstACI | GRCGYC | 2 cut(s) | 23, 57 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1287 |
| BstBI | TTCGAA | 1 cut(s) | 1613 |
| BstC8I | GCNNGC | 5 cut(s) | 61, 150, 1366, 2612, 2914 |
| BstDEI | CTNAG | 9 cut(s) | 324, 393, 1298, 1323, 1480, 2442, 2458, 2754, 2952 |
| BstDSI | CCRYGG | 2 cut(s) | 162, 490 |
| BstF5I | GGATG | 8 cut(s) | 289, 412, 796, 1099, 1655, 1681, 1888, 1952 |
| BstH2I | RGCGCY | 2 cut(s) | 26, 60 |
| BstHHI | GCGC | 4 cut(s) | 25, 59, 430, 2539 |
| BstMAI | GTCTC | 3 cut(s) | 573, 1756, 1963 |
| BstMCI | CGRYCG | 1 cut(s) | 3017 |
| BstNI | CCWGG | 3 cut(s) | 666, 984, 2301 |
| BstNSI | RCATGY | 5 cut(s) | 1209, 1233, 1541, 2717, 2846 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 994, 2529 |
| BstSCI | CCNGG | 3 cut(s) | 664, 982, 2299 |
| BstSLI | GKGCMC | 5 cut(s) | 79, 108, 1237, 1586, 2581 |
| BstV1I | GCAGC | 6 cut(s) | 412, 424, 575, 938, 1077, 2283 |
| BstV2I | GAAGAC | 1 cut(s) | 990 |
| BstX2I | RGATCY | 6 cut(s) | 4, 743, 752, 1110, 1504, 2129 |
| BstYI | RGATCY | 6 cut(s) | 4, 743, 752, 1110, 1504, 2129 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1480 |
| BsuRI | GGCC | 3 cut(s) | 43, 77, 106 |
| BtgI | CCRYGG | 2 cut(s) | 162, 490 |
| BtsCI | GGATG | 8 cut(s) | 289, 412, 796, 1099, 1655, 1681, 1888, 1952 |
| BtsI | GCAGTG | 3 cut(s) | 664, 1276, 1669 |
| Cac8I | GCNNGC | 5 cut(s) | 61, 150, 1366, 2612, 2914 |
| CciI | TCATGA | 1 cut(s) | 2893 |
| CfoI | GCGC | 4 cut(s) | 25, 59, 430, 2539 |
| Cfr10I | RCCGGY | 3 cut(s) | 59, 1364, 3016 |
| Cfr13I | GGNCC | 8 cut(s) | 75, 76, 104, 105, 356, 842, 1372, 2927 |
| CseI | GACGC | 1 cut(s) | 555 |
| Csp6I | GTAC | 7 cut(s) | 476, 773, 1383, 1413, 1443, 2085, 2881 |
| CspAI | ACCGGT | 1 cut(s) | 3016 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 219, 254 |
| CviQI | GTAC | 7 cut(s) | 476, 773, 1383, 1413, 1443, 2085, 2881 |
| DdeI | CTNAG | 9 cut(s) | 324, 393, 1298, 1323, 1480, 2442, 2458, 2754, 2952 |
| DinI | GGCGCC | 2 cut(s) | 24, 58 |
| Eam1104I | CTCTTC | 5 cut(s) | 32, 122, 676, 2301, 2726 |
| EarI | CTCTTC | 5 cut(s) | 32, 122, 676, 2301, 2726 |
| EciI | GGCGGA | 4 cut(s) | 29, 78, 152, 195 |
| Ecl136II | GAGCTC | 1 cut(s) | 2483 |
| Eco130I | CCWWGG | 5 cut(s) | 26, 162, 264, 490, 2527 |
| Eco24I | GRGCYC | 3 cut(s) | 79, 108, 2485 |
| Eco31I | GGTCTC | 2 cut(s) | 1756, 1963 |
| Eco32I | GATATC | 1 cut(s) | 1220 |
| Eco47I | GGWCC | 4 cut(s) | 356, 842, 1372, 2927 |
| Eco53kI | GAGCTC | 1 cut(s) | 2483 |
| Eco57I | CTGAAG | 3 cut(s) | 1014, 1866, 2744 |
| Eco81I | CCTNAGG | 1 cut(s) | 1480 |
| Eco88I | CYCGRG | 2 cut(s) | 1263, 2136 |
| EcoICRI | GAGCTC | 1 cut(s) | 2483 |
| EcoO109I | RGGNCCY | 3 cut(s) | 75, 104, 356 |
| EcoRI | GAATTC | 2 cut(s) | 940, 1257 |
| EcoRII | CCWGG | 3 cut(s) | 664, 982, 2299 |
| EcoRV | GATATC | 1 cut(s) | 1220 |
| EcoT14I | CCWWGG | 5 cut(s) | 26, 162, 264, 490, 2527 |
| EcoT22I | ATGCAT | 2 cut(s) | 766, 1207 |
| EcoT38I | GRGCYC | 3 cut(s) | 79, 108, 2485 |
| EgeI | GGCGCC | 2 cut(s) | 24, 58 |
| EheI | GGCGCC | 2 cut(s) | 24, 58 |
| ErhI | CCWWGG | 5 cut(s) | 26, 162, 264, 490, 2527 |
| Esp3I | CGTCTC | 1 cut(s) | 573 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 998, 1030 |
| FaqI | GGGAC | 7 cut(s) | 134, 342, 1358, 1388, 1418, 1433, 1864 |
| FauI | CCCGC | 1 cut(s) | 2905 |
| FauNDI | CATATG | 1 cut(s) | 2698 |
| FbaI | TGATCA | 1 cut(s) | 1096 |
| FblI | GTMKAC | 2 cut(s) | 158, 824 |
| Fnu4HI | GCNGC | 7 cut(s) | 426, 438, 500, 564, 927, 1091, 2272 |
| FokI | GGATG | 8 cut(s) | 296, 419, 783, 1086, 1642, 1688, 1895, 1939 |
| FriOI | GRGCYC | 3 cut(s) | 79, 108, 2485 |
| Fsp4HI | GCNGC | 7 cut(s) | 426, 438, 500, 564, 927, 1091, 2272 |
| FspI | TGCGCA | 2 cut(s) | 429, 2538 |
| GlaI | GCGC | 4 cut(s) | 24, 58, 429, 2538 |
| GluI | GCNGC | 7 cut(s) | 426, 438, 500, 564, 927, 1091, 2272 |
| GsaI | CCCAGC | 1 cut(s) | 701 |
| HaeII | RGCGCY | 2 cut(s) | 26, 60 |
| HaeIII | GGCC | 3 cut(s) | 43, 77, 106 |
| HapII | CCGG | 4 cut(s) | 60, 200, 1365, 3017 |
| HgaI | GACGC | 1 cut(s) | 555 |
| HhaI | GCGC | 4 cut(s) | 25, 59, 430, 2539 |
| Hin1I | GRCGYC | 2 cut(s) | 23, 57 |
| Hin6I | GCGC | 4 cut(s) | 23, 57, 428, 2537 |
| HinP1I | GCGC | 4 cut(s) | 23, 57, 428, 2537 |
| HincII | GTYRAC | 3 cut(s) | 159, 366, 2809 |
| HindII | GTYRAC | 3 cut(s) | 159, 366, 2809 |
| HindIII | AAGCTT | 3 cut(s) | 466, 1023, 2756 |
| HpaI | GTTAAC | 1 cut(s) | 2809 |
| HpaII | CCGG | 4 cut(s) | 60, 200, 1365, 3017 |
| HphI | GGTGA | 6 cut(s) | 725, 1233, 1280, 1928, 1986, 2645 |
| Hpy166II | GTNNAC | 8 cut(s) | 159, 366, 825, 842, 989, 1235, 2809, 2881 |
| Hpy8I | GTNNAC | 8 cut(s) | 159, 366, 825, 842, 989, 1235, 2809, 2881 |
| Hpy99I | CGWCG | 1 cut(s) | 196 |
| HpyAV | CCTTC | 9 cut(s) | 274, 878, 1386, 1416, 1446, 1461, 1797, 1841, 1983 |
| HpyF3I | CTNAG | 9 cut(s) | 324, 393, 1298, 1323, 1480, 2442, 2458, 2754, 2952 |
| Hsp92I | GRCGYC | 2 cut(s) | 23, 57 |
| HspAI | GCGC | 4 cut(s) | 23, 57, 428, 2537 |
| KasI | GGCGCC | 2 cut(s) | 22, 56 |
| KflI | GGGWCCC | 1 cut(s) | 356 |
| KroI | GCCGGC | 2 cut(s) | 59, 1364 |
| KroNI | GCCGGC | 2 cut(s) | 61, 1366 |
| Ksp22I | TGATCA | 1 cut(s) | 1096 |
| KspAI | GTTAAC | 1 cut(s) | 2809 |
| LmnI | GCTCC | 7 cut(s) | 196, 241, 817, 1496, 2480, 2488, 2979 |
| Lsp1109I | GCAGC | 6 cut(s) | 412, 424, 575, 938, 1077, 2283 |
| LweI | GCATC | 6 cut(s) | 274, 1179, 1192, 1277, 1801, 2203 |
| MaeIII | GTNAC | 6 cut(s) | 592, 913, 1293, 1417, 2692, 2828 |
| MflI | RGATCY | 6 cut(s) | 4, 743, 752, 1110, 1504, 2129 |
| MhlI | GDGCHC | 7 cut(s) | 79, 108, 814, 1237, 1586, 2485, 2581 |
| Mly113I | GGCGCC | 2 cut(s) | 23, 57 |
| MlyI | GAGTC | 1 cut(s) | 910 |
| MmeI | TCCRAC | 2 cut(s) | 839, 2229 |
| Mph1103I | ATGCAT | 2 cut(s) | 766, 1207 |
| MreI | CGCCGGCG | 1 cut(s) | 59 |
| MroNI | GCCGGC | 2 cut(s) | 59, 1364 |
| MroXI | GAANNNNTTC | 4 cut(s) | 685, 2063, 2640, 2940 |
| MseI | TTAA | 9 cut(s) | 318, 458, 728, 1358, 1596, 1706, 2036, 2808, 2918 |
| MslI | CAYNNNNRTG | 1 cut(s) | 896 |
| MspA1I | CMGCKG | 3 cut(s) | 437, 482, 1090 |
| MspI | CCGG | 4 cut(s) | 60, 200, 1365, 3017 |
| MspR9I | CCNGG | 3 cut(s) | 666, 984, 2301 |
| Mva1269I | GAATGC | 1 cut(s) | 701 |
| MvaI | CCWGG | 3 cut(s) | 666, 984, 2301 |
| NaeI | GCCGGC | 2 cut(s) | 61, 1366 |
| NarI | GGCGCC | 2 cut(s) | 23, 57 |
| NcoI | CCATGG | 2 cut(s) | 162, 490 |
| NdeI | CATATG | 1 cut(s) | 2698 |
| NgoMIV | GCCGGC | 2 cut(s) | 59, 1364 |
| NmuCI | GTSAC | 4 cut(s) | 913, 1293, 1417, 2828 |
| NsbI | TGCGCA | 2 cut(s) | 429, 2538 |
| NsiI | ATGCAT | 2 cut(s) | 766, 1207 |
| NspI | RCATGY | 5 cut(s) | 1209, 1233, 1541, 2717, 2846 |
| NspV | TTCGAA | 1 cut(s) | 1613 |
| PaeR7I | CTCGAG | 2 cut(s) | 1263, 2136 |
| PagI | TCATGA | 1 cut(s) | 2893 |
| PciI | ACATGT | 2 cut(s) | 1229, 1537 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 164 |
| PctI | GAATGC | 1 cut(s) | 701 |
| PdiI | GCCGGC | 2 cut(s) | 61, 1366 |
| PdmI | GAANNNNTTC | 4 cut(s) | 685, 2063, 2640, 2940 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 971, 2492 |
| PfoI | TCCNGGA | 1 cut(s) | 2299 |
| PinAI | ACCGGT | 1 cut(s) | 3016 |
| PkrI | GCNGC | 7 cut(s) | 427, 439, 501, 565, 928, 1092, 2273 |
| PleI | GAGTC | 1 cut(s) | 910 |
| PluTI | GGCGCC | 2 cut(s) | 26, 60 |
| PpsI | GAGTC | 1 cut(s) | 910 |
| PpuMI | RGGWCCY | 1 cut(s) | 356 |
| PscI | ACATGT | 2 cut(s) | 1229, 1537 |
| PshAI | GACNNNNGTC | 2 cut(s) | 994, 2529 |
| Psp124BI | GAGCTC | 1 cut(s) | 2485 |
| Psp5II | RGGWCCY | 1 cut(s) | 356 |
| Psp6I | CCWGG | 3 cut(s) | 664, 982, 2299 |
| PspFI | CCCAGC | 1 cut(s) | 697 |
| PspGI | CCWGG | 3 cut(s) | 664, 982, 2299 |
| PspOMI | GGGCCC | 2 cut(s) | 75, 104 |
| PspPI | GGNCC | 8 cut(s) | 75, 76, 104, 105, 356, 842, 1372, 2927 |
| PspPPI | RGGWCCY | 1 cut(s) | 356 |
| PspXI | VCTCGAGB | 1 cut(s) | 1263 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1173, 1205 |
| PsuI | RGATCY | 6 cut(s) | 4, 743, 752, 1110, 1504, 2129 |
| PvuII | CAGCTG | 2 cut(s) | 482, 1090 |
| RsaI | GTAC | 7 cut(s) | 477, 774, 1384, 1414, 1444, 2086, 2882 |
| RsaNI | GTAC | 7 cut(s) | 476, 773, 1383, 1413, 1443, 2085, 2881 |
| RseI | CAYNNNNRTG | 1 cut(s) | 896 |
| SacI | GAGCTC | 1 cut(s) | 2485 |
| SalI | GTCGAC | 1 cut(s) | 157 |
| SaqAI | TTAA | 9 cut(s) | 318, 458, 728, 1358, 1596, 1706, 2036, 2808, 2918 |
| SatI | GCNGC | 7 cut(s) | 426, 438, 500, 564, 927, 1091, 2272 |
| Sau96I | GGNCC | 8 cut(s) | 75, 76, 104, 105, 356, 842, 1372, 2927 |
| ScaI | AGTACT | 1 cut(s) | 1444 |
| SchI | GAGTC | 1 cut(s) | 910 |
| ScrFI | CCNGG | 3 cut(s) | 666, 984, 2301 |
| SduI | GDGCHC | 7 cut(s) | 79, 108, 814, 1237, 1586, 2485, 2581 |
| SfaNI | GCATC | 6 cut(s) | 274, 1179, 1192, 1277, 1801, 2203 |
| SfoI | GGCGCC | 2 cut(s) | 24, 58 |
| Sfr274I | CTCGAG | 2 cut(s) | 1263, 2136 |
| SfuI | TTCGAA | 1 cut(s) | 1613 |
| SgrAI | CRCCGGYG | 1 cut(s) | 59 |
| SinI | GGWCC | 4 cut(s) | 356, 842, 1372, 2927 |
| SlaI | CTCGAG | 2 cut(s) | 1263, 2136 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 896 |
| SmlI | CTYRAG | 3 cut(s) | 834, 1263, 2136 |
| SmoI | CTYRAG | 3 cut(s) | 834, 1263, 2136 |
| SpeI | ACTAGT | 1 cut(s) | 2549 |
| SsiI | CCGC | 8 cut(s) | 14, 63, 137, 180, 374, 435, 500, 2912 |
| SspDI | GGCGCC | 2 cut(s) | 22, 56 |
| SspI | AATATT | 2 cut(s) | 1594, 2032 |
| SstI | GAGCTC | 1 cut(s) | 2485 |
| StyD4I | CCNGG | 3 cut(s) | 664, 982, 2299 |
| StyI | CCWWGG | 5 cut(s) | 26, 162, 264, 490, 2527 |
| TaqI | TCGA | 6 cut(s) | 158, 175, 1264, 1613, 2137, 2473 |
| TatI | WGTACW | 4 cut(s) | 772, 1382, 1442, 2084 |
| TauI | GCSGC | 1 cut(s) | 502 |
| Tru1I | TTAA | 9 cut(s) | 318, 458, 728, 1358, 1596, 1706, 2036, 2808, 2918 |
| Tru9I | TTAA | 9 cut(s) | 318, 458, 728, 1358, 1596, 1706, 2036, 2808, 2918 |
| TseFI | GTSAC | 4 cut(s) | 913, 1293, 1417, 2828 |
| TseI | GCWGC | 6 cut(s) | 425, 437, 563, 926, 1090, 2271 |
| Tsp45I | GTSAC | 4 cut(s) | 913, 1293, 1417, 2828 |
| TspGWI | ACGGA | 4 cut(s) | 209, 1688, 1895, 2992 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 971, 2492 |
| VneI | GTGCAC | 1 cut(s) | 1233 |
| VpaK11BI | GGWCC | 4 cut(s) | 356, 842, 1372, 2927 |
| XapI | RAATTY | 7 cut(s) | 171, 781, 940, 1257, 1890, 2226, 2500 |
| XbaI | TCTAGA | 1 cut(s) | 2162 |
| XceI | RCATGY | 5 cut(s) | 1209, 1233, 1541, 2717, 2846 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 271, 2732 |
| XhoI | CTCGAG | 2 cut(s) | 1263, 2136 |
| XmaJI | CCTAGG | 1 cut(s) | 26 |
| XmiI | GTMKAC | 2 cut(s) | 158, 824 |
| XmnI | GAANNNNTTC | 4 cut(s) | 685, 2063, 2640, 2940 |
| ZrmI | AGTACT | 1 cut(s) | 1444 |
| Zsp2I | ATGCAT | 2 cut(s) | 766, 1207 |