Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004984

Physical Location & Seq

Genomic Coordinates Reverse (-)

35048683 .. 35054471

Gene Structure 5789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG316800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3054 bp

ATGGATCTGACGGCGGACGAGCCGCCTAGGGTTGAGAAGAGGCCGATTCAGAACGGCGCCGGCGGAGAATTGGAACCCCAGCTGAGCAAGAAGCCCAGATTGGGGCCCGATTGCGAGAGGGACTTGAAGAGAGTGGCGGAGATTGTGCTGGCTCTGTCGACCATGGCGAAAATTCGAGGCGGAGGGAAGCCGACGGAGCCGGAGATTGGGCTTATGGAGGAGGCTAGGGCAAAGCTGGTCGAGCTGTGCGAGGGTTTGCCGCCCAAGGAGATTGTGGCGAAGGATGCGATTTCGGCTGTGATTGAGGATTTGGGGCTTAATGCCAAGCTCAATGAACAGAGATTAGGGTTTCGGGGTCCCAAGTTGACGATTGCGGAGAAGTTTGCACTCACTAAGAGGAAGATGGATGAATCCAAGAAATACGCTGCGCAAACCGCTGCATATCCATCTCAACCATTAAAACCAAGCTTCAATGTAGCAGCTGAAAACCATGGGTTGCCACATACTGTTCGTATTTCTACAGATAACCCAAACCATGCACCTATTTCAACTGGTGGTTTCGCACCGTCTCCTCTTGTTCATGTTTCCACAGTAACTCCTACATCTGCACAGTATCAGTTGCCCACCAGCGAAATTAGAACAACTATGGTTTCTGGCAGTGTGCCTGGTAGTCATCTGGGAAGAGATTCATCTTCCCCAGCATTTCCTAGAGGTGAAAGAGTGCAATTAAGAACTGATGGAGGATCCAATGGATCTTCTTATGCATATCAAGTACAAGCAAATTCTTCGGCAAATCATCCACCGGTTAGTGCTCCAACTTGGTCTACACAAACTCAAGGTGGACCAGAAAACAAGGTGCCAAATCATACTTCTGTCAAGGTTGAAGGAACCGCTGGTATGAGTAAGCCATCAGTGACTCCTCTAGCAGCACGAGATCAGAATTCTAGGTCATTTGCCTCTCAACCATCTTCTGGACATTTGCCTGGTGGACACCAGTCTTCACAAAAGATTCGCTTTGTTCAAGCTTCTTCAGTTCCTAATAATCACACTGAAATTGCGAGAATTATTCAGAAATTATTGCAACCACAGCTGCCTGATCATCCCACATGGATCCCTCCATCAAGGGATTATATGAGTAAGGCTTTGACTTGCCAAACTTGCCAGATGAGCATCAATGAGGTAGATAATGTTCTTATTTGTGATGCATGTGAGAAAGGATATCACATTTCATGTGCACAATCACCTAACCAGAGAGGAATTCCTCGAGGTGAATGGCACTGCACAAGATGCTTGTCCCTAAGCAATGGAAAGCCTTTGCCTCCTAAGTATGGGCGTGTTATGAGAAGTAATATACAATTAAAAGCCGGCACGGTCCCTTCCAGTACAGTCGCTTCTAGCACAGTCCCCTCCAGCACGGTTGCTTCCAGCACAGTCCCTTCCAGCATGGCTGTCGTTCAGATGTCCTCAGGGAATAAAGTGGGAGCTTTAGATCCAAAGGTCTATGAGCAGAAGATAAATGCACATGTAAGCTCTGTTTTCCAGAATCCTGCTCATTTGGTTGGTGTGGGCACAAACAATATTAAGTCGGCAACAGATTCAAAAGTTTCATTTGCAAGAGAAATGCAAGGGAATAATTTACCATCCAGCAGTGTAAATACGGATGAGAAACCTCTTTCTGGAAGTTTCCTGTTAAGTGAAACATCATCTCAACAAATAGGTAATTCTGAATTATCTACATCGGACAAGAGACCTATGGAATCAAGAGCAGAACCTTCTTCTGATTTGTCAAACAAAGATGCTGATCCCAAGATTTCAATTGCAAGTGAAACTGAAGGGACTAATTTTCCATCAAGCAGTAAAACTACGGATGAGAAAATTCTTTCTGGAAGTTTCCAGTCTGGTGAAAGGACATCTCAACAGAGAGATATTTCTGAATCATCCAAATCTGACAAGAGACCTTCTGAATCAAGAGCAGAATCACCTACTGATTTACCCAACAAAGATTCTGATCCAAATATTTTAAGTGCAACAGAAACACAAGGGAATAATTTCCCATCAAGCAGTCAAAGTACAGATGAGAAACCTCTTTCTGGAAGTTTCATGTCTAGTGAAAGATCCTCTCGAGAAATAGATAATTCTGAATCATCTAGACTATTTGAATCAAGCACAGAGCCTCCTGCTGATTTATCCAACAAAGATGCTGATTCAAAAATTTCAAATGCAAGAGAAATGCAAGGTAATAATTTCTCAACAAGCAGCAAGGGTATAAATGAGAAACCTCTTCCTGGAAGTTTCCCGTCTAGCGAAAGTTCATCTCAACGAACTGATAATTCTGAATTATCTATATTAGATAAGATACCTTATGAATCAAAAACAGAGCCTCCTGCTGATTTACCCAAGGAAGATATTGATAAGTCTGTTCCTTCTCAGCCAGTTTCTAACTCAGAAGTTGTTGATCGAGCAGGAGCTCCAAACTGTGGAGAAAATTCTAGCTGTTCTATTAGAGATGACCAAGGTCTTGCGCAAGAAAATACTAGTGAAAGTCTTGTAGTCAGTGGTGAGGCACTAGAGCATACTGGATTTACTTCTGATGGCTTGCGACCTGTTGAATGGATCGGTGATTCAATTGAAGATGTCAGTGAAAAAAACTTCTATCGTTCTTGTCGCATTGATGGAGTAACATATGAGCTACAAGAACATGCTCTCTTCCAGTCTAGTCATGGCAAATTGATACCCTCTAAGCTTCAGTCAATGTGGGAGGATAGGAAAACTGGGTCAAAGTGGGTTATAGTTAACAGTTGCTACTTTCCCAGTGACTTACCAGAGCATGTTAGTCGTCCATCTACACCAGAAAGTAATGAGGTGTACGAATCTAATCATGAAACAACTGTAATGGCGGGCTTAATTCAAGGTCCATGTGAAGTTCTTCCTCCTGCTAAGTTCAGTGAAGAAATTGAAAGACGGAGCCAATTAGGACATGATACAAATAATGAACTACGACCAGTTTTCCTGTGCAAGTATGAGTCCTTCAATTCTTACATGTCATCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

1017

Amino Acids

109.83

Weight (kDa)

5.69

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7797	PF25073	29 - 85	1.8e-22	Domain of unknown function (DUF7797)
PHD	PF00628	384 - 430	6.8e-07	PHD-finger
BAH	PF01426	914 - 1007	2.1e-08	BAH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50620 AT3G20280 AT3G20280 AT3G20280 AT3G20280 AT3G20280
fragaria_vesca	FvH4_3g23572 FvH4_3g23572 FvH4_3g23572 FvH4_3g23572
malus_domestica	MD03G1193000.v1.1 MD11G1209200.v1.1
prunus_persica	Prupe.4G224000_v2.0.a1 Prupe.4G224000_v2.0.a1
pyrus_communis	pycom03g14530 pycom03g14540 pycom11g18420
rosa_chinensis	RchiOBHm_Chr5g0041571
rosa_laevigata	RLG00000034083
rosa_multiflora	Rmu_sc0003051.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038930
rosa_rugosa	Rorug05G0193800 Rorug05G0193900 Rorug05G0193900
rosa_samantha	Rh5AG279500 Rh5BG283900 Rh5BG284800 Rh5CG316800 Rh5DG293600
rosa_wichuraiana	Rw5G026310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1263
Acc16I	TGCGCA	2 cut(s)	429, 2523
AccB1I	GGYRCC	2 cut(s)	56, 856
AccB7I	CCANNNNNTGG	2 cut(s)	971, 2477
AccI	GTMKAC	2 cut(s)	158, 824
AcsI	RAATTY	7 cut(s)	171, 781, 940, 1257, 1875, 2211, 2485
AcuI	CTGAAG	3 cut(s)	1014, 1851, 2729
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	4 cut(s)	774, 1384, 2071, 2867
AfiI	CCNNNNNNNGG	9 cut(s)	101, 102, 206, 971, 1328, 1676, 2090, 2285, 2477
AflIII	ACRYGT	2 cut(s)	1522, 3039
AgeI	ACCGGT	1 cut(s)	802
AhlI	ACTAGT	1 cut(s)	2534
AjnI	CCWGG	3 cut(s)	664, 982, 2284
AjuI	GAANNNNNNNTTGG	4 cut(s)	83, 115, 853, 885
Alw21I	GWGCWC	3 cut(s)	814, 1237, 2470
Alw26I	GTCTC	3 cut(s)	573, 1741, 1948
Alw44I	GTGCAC	1 cut(s)	1233
Ama87I	CYCGRG	2 cut(s)	1263, 2121
AoxI	GGCC	2 cut(s)	41, 104
ApaI	GGGCCC	1 cut(s)	108
ApaLI	GTGCAC	1 cut(s)	1233
ApeKI	GCWGC	6 cut(s)	425, 437, 479, 926, 1090, 2256
ApoI	RAATTY	7 cut(s)	171, 781, 940, 1257, 1875, 2211, 2485
AsiGI	ACCGGT	1 cut(s)	802
Asp700I	GAANNNNTTC	3 cut(s)	685, 2048, 2925
AspA2I	CCTAGG	1 cut(s)	26
AspLEI	GCGC	3 cut(s)	59, 430, 2524
AspS9I	GGNCC	6 cut(s)	104, 105, 356, 842, 1372, 2912
AsuHPI	GGTGA	7 cut(s)	725, 1233, 1280, 1913, 1971, 2570, 2630
AvaI	CYCGRG	2 cut(s)	1263, 2121
AvaII	GGWCC	4 cut(s)	356, 842, 1372, 2912
AvrII	CCTAGG	1 cut(s)	26
AxyI	CCTNAGG	1 cut(s)	1465
BaeGI	GKGCMC	3 cut(s)	108, 1237, 1571
BamHI	GGATCC	2 cut(s)	743, 1110
BanI	GGYRCC	2 cut(s)	56, 856
BanII	GRGCYC	2 cut(s)	108, 2470
BarI	GAAGNNNNNNTAC	4 cut(s)	1375, 1407, 3011, 3043
BauI	CACGAG	1 cut(s)	930
BbsI	GAAGAC	1 cut(s)	990
Bbv12I	GWGCWC	3 cut(s)	814, 1237, 2470
BbvI	GCAGC	6 cut(s)	412, 424, 491, 938, 1077, 2268
BceAI	ACGGC	2 cut(s)	27, 70
BcgI	CGANNNNNNTGC	6 cut(s)	768, 802, 1432, 1466, 2816, 2850
BciT130I	CCWGG	3 cut(s)	666, 984, 2286
BclI	TGATCA	1 cut(s)	1096
BcoDI	GTCTC	3 cut(s)	573, 1741, 1948
BcuI	ACTAGT	1 cut(s)	2534
BfmI	CTRYAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	8 cut(s)	23, 260, 426, 438, 480, 927, 1091, 2257
BlnI	CCTAGG	1 cut(s)	26
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	8 cut(s)	24, 261, 427, 439, 481, 928, 1092, 2258
Bme1390I	CCNGG	3 cut(s)	666, 984, 2286
Bme18I	GGWCC	4 cut(s)	356, 842, 1372, 2912
BmeT110I	CYCGRG	2 cut(s)	1263, 2121
BmgT120I	GGNCC	6 cut(s)	104, 105, 356, 842, 1372, 2912
BmrFI	CCNGG	3 cut(s)	666, 984, 2286
BmrI	ACTGGG	2 cut(s)	2781, 2805
BmsI	GCATC	6 cut(s)	274, 1179, 1192, 1277, 1786, 2188
BmuI	ACTGGG	2 cut(s)	2781, 2805
BoxI	GACNNNNGTC	2 cut(s)	994, 2514
BpiI	GAAGAC	1 cut(s)	990
BpmI	CTGGAG	1 cut(s)	1393
Bpu10I	CCTNAGC	1 cut(s)	1298
Bpu1102I	GCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	819
BsaBI	GATNNNNATC	3 cut(s)	1169, 1800, 2007
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	2 cut(s)	1741, 1948
BsaJI	CCNNGG	6 cut(s)	26, 162, 264, 490, 2397, 2512
BsaWI	WCCGGW	1 cut(s)	802
BsaXI	ACNNNNNCTCC	6 cut(s)	580, 610, 2158, 2188, 2365, 2395
Bsc4I	CCNNNNNNNGG	9 cut(s)	101, 102, 206, 971, 1328, 1676, 2090, 2285, 2477
Bse118I	RCCGGY	3 cut(s)	59, 802, 1364
Bse21I	CCTNAGG	1 cut(s)	1465
Bse3DI	GCAATG	1 cut(s)	1309
Bse8I	GATNNNNATC	3 cut(s)	1169, 1800, 2007
BseBI	CCWGG	3 cut(s)	666, 984, 2286
BseDI	CCNNGG	6 cut(s)	26, 162, 264, 490, 2397, 2512
BseGI	GGATG	9 cut(s)	289, 412, 796, 1099, 1640, 1666, 1873, 1937, 3044
BseJI	GATNNNNATC	3 cut(s)	1169, 1800, 2007
BseLI	CCNNNNNNNGG	9 cut(s)	101, 102, 206, 971, 1328, 1676, 2090, 2285, 2477
BseMI	GCAATG	1 cut(s)	1309
BseMII	CTCAG	4 cut(s)	74, 1479, 2441, 2457
BseRI	GAGGAG	3 cut(s)	233, 561, 909
BseSI	GKGCMC	3 cut(s)	108, 1237, 1571
BseXI	GCAGC	6 cut(s)	412, 424, 491, 938, 1077, 2268
BseYI	CCCAGC	2 cut(s)	78, 697
BsgI	GTGCAG	2 cut(s)	591, 1264
BshFI	GGCC	2 cut(s)	43, 106
BshNI	GGYRCC	2 cut(s)	56, 856
BshTI	ACCGGT	1 cut(s)	802
BsiHKAI	GWGCWC	3 cut(s)	814, 1237, 2470
BsiHKCI	CYCGRG	2 cut(s)	1263, 2121
BsiSI	CCGG	4 cut(s)	60, 200, 803, 1365
BslFI	GGGAC	7 cut(s)	134, 342, 1279, 1358, 1388, 1418, 1849
BslI	CCNNNNNNNGG	9 cut(s)	101, 102, 206, 971, 1328, 1676, 2090, 2285, 2477
BsmAI	GTCTC	3 cut(s)	573, 1741, 1948
BsmBI	CGTCTC	1 cut(s)	573
BsmFI	GGGAC	7 cut(s)	134, 342, 1279, 1358, 1388, 1418, 1849
BsnI	GGCC	2 cut(s)	43, 106
Bso31I	GGTCTC	2 cut(s)	1741, 1948
BsoBI	CYCGRG	2 cut(s)	1263, 2121
Bsp120I	GGGCCC	1 cut(s)	104
Bsp1286I	GDGCHC	5 cut(s)	108, 814, 1237, 1571, 2470
Bsp1720I	GCTNAGC	1 cut(s)	83
Bsp19I	CCATGG	2 cut(s)	162, 490
BspANI	GGCC	2 cut(s)	43, 106
BspCNI	CTCAG	4 cut(s)	75, 1478, 2440, 2456
BspHI	TCATGA	1 cut(s)	2878
BspT107I	GGYRCC	2 cut(s)	56, 856
BspTNI	GGTCTC	2 cut(s)	1741, 1948
BsrDI	GCAATG	1 cut(s)	1309
BsrFI	RCCGGY	3 cut(s)	59, 802, 1364
BssAI	RCCGGY	3 cut(s)	59, 802, 1364
BssECI	CCNNGG	6 cut(s)	26, 162, 264, 490, 2397, 2512
BssNI	GRCGYC	1 cut(s)	57
BssSI	CACGAG	1 cut(s)	930
BssT1I	CCWWGG	6 cut(s)	26, 162, 264, 490, 2397, 2512
Bst2BI	CACGAG	1 cut(s)	930
Bst2UI	CCWGG	3 cut(s)	666, 984, 2286
Bst6I	CTCTTC	5 cut(s)	32, 122, 676, 2286, 2711
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	1287
BstC8I	GCNNGC	5 cut(s)	61, 150, 1366, 2597, 2899
BstDEI	CTNAG	9 cut(s)	83, 393, 1298, 1323, 1465, 2427, 2443, 2739, 2937
BstDSI	CCRYGG	2 cut(s)	162, 490
BstF5I	GGATG	9 cut(s)	289, 412, 796, 1099, 1640, 1666, 1873, 1937, 3044
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	3 cut(s)	59, 430, 2524
BstMAI	GTCTC	3 cut(s)	573, 1741, 1948
BstMWI	GCNNNNNNNGC	9 cut(s)	196, 241, 284, 293, 434, 1087, 1158, 1167, 1287
BstNI	CCWGG	3 cut(s)	666, 984, 2286
BstNSI	RCATGY	5 cut(s)	1209, 1526, 2702, 2831, 3043
BstPAI	GACNNNNGTC	2 cut(s)	994, 2514
BstSCI	CCNGG	3 cut(s)	664, 982, 2284
BstSFI	CTRYAG	1 cut(s)	519
BstSLI	GKGCMC	3 cut(s)	108, 1237, 1571
BstV1I	GCAGC	6 cut(s)	412, 424, 491, 938, 1077, 2268
BstV2I	GAAGAC	1 cut(s)	990
BstX2I	RGATCY	6 cut(s)	4, 743, 752, 1110, 1489, 2114
BstYI	RGATCY	6 cut(s)	4, 743, 752, 1110, 1489, 2114
Bsu36I	CCTNAGG	1 cut(s)	1465
BsuRI	GGCC	2 cut(s)	43, 106
BtgI	CCRYGG	2 cut(s)	162, 490
BtsCI	GGATG	9 cut(s)	289, 412, 796, 1099, 1640, 1666, 1873, 1937, 3044
BtsI	GCAGTG	3 cut(s)	664, 1276, 1654
BtsIMutI	CAGTG	9 cut(s)	664, 918, 1047, 1276, 1654, 2560, 2644, 2818, 2950
Cac8I	GCNNGC	5 cut(s)	61, 150, 1366, 2597, 2899
CciI	TCATGA	1 cut(s)	2878
CfoI	GCGC	3 cut(s)	59, 430, 2524
Cfr10I	RCCGGY	3 cut(s)	59, 802, 1364
Cfr13I	GGNCC	6 cut(s)	104, 105, 356, 842, 1372, 2912
Csp6I	GTAC	4 cut(s)	773, 1383, 2070, 2866
CspAI	ACCGGT	1 cut(s)	802
CviQI	GTAC	4 cut(s)	773, 1383, 2070, 2866
DdeI	CTNAG	9 cut(s)	83, 393, 1298, 1323, 1465, 2427, 2443, 2739, 2937
DinI	GGCGCC	1 cut(s)	58
Eam1104I	CTCTTC	5 cut(s)	32, 122, 676, 2286, 2711
EarI	CTCTTC	5 cut(s)	32, 122, 676, 2286, 2711
EciI	GGCGGA	4 cut(s)	29, 78, 152, 195
Ecl136II	GAGCTC	1 cut(s)	2468
Eco130I	CCWWGG	6 cut(s)	26, 162, 264, 490, 2397, 2512
Eco24I	GRGCYC	2 cut(s)	108, 2470
Eco31I	GGTCTC	2 cut(s)	1741, 1948
Eco32I	GATATC	1 cut(s)	1220
Eco47I	GGWCC	4 cut(s)	356, 842, 1372, 2912
Eco53kI	GAGCTC	1 cut(s)	2468
Eco57I	CTGAAG	3 cut(s)	1014, 1851, 2729
Eco81I	CCTNAGG	1 cut(s)	1465
Eco88I	CYCGRG	2 cut(s)	1263, 2121
EcoICRI	GAGCTC	1 cut(s)	2468
EcoO109I	RGGNCCY	2 cut(s)	104, 356
EcoRI	GAATTC	2 cut(s)	940, 1257
EcoRII	CCWGG	3 cut(s)	664, 982, 2284
EcoRV	GATATC	1 cut(s)	1220
EcoT14I	CCWWGG	6 cut(s)	26, 162, 264, 490, 2397, 2512
EcoT22I	ATGCAT	2 cut(s)	766, 1207
EcoT38I	GRGCYC	2 cut(s)	108, 2470
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	6 cut(s)	26, 162, 264, 490, 2397, 2512
Esp3I	CGTCTC	1 cut(s)	573
FalI	AAGNNNNNCTT	2 cut(s)	998, 1030
FaqI	GGGAC	7 cut(s)	134, 342, 1279, 1358, 1388, 1418, 1849
FauI	CCCGC	1 cut(s)	2890
FauNDI	CATATG	1 cut(s)	2683
FbaI	TGATCA	1 cut(s)	1096
FblI	GTMKAC	2 cut(s)	158, 824
Fnu4HI	GCNGC	8 cut(s)	23, 260, 426, 438, 480, 927, 1091, 2257
FokI	GGATG	9 cut(s)	296, 419, 783, 1086, 1627, 1673, 1880, 1924, 3031
FriOI	GRGCYC	2 cut(s)	108, 2470
Fsp4HI	GCNGC	8 cut(s)	23, 260, 426, 438, 480, 927, 1091, 2257
FspI	TGCGCA	2 cut(s)	429, 2523
GlaI	GCGC	3 cut(s)	58, 429, 2523
GluI	GCNGC	8 cut(s)	23, 260, 426, 438, 480, 927, 1091, 2257
GsaI	CCCAGC	2 cut(s)	82, 701
GsuI	CTGGAG	1 cut(s)	1393
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	43, 106
HapII	CCGG	4 cut(s)	60, 200, 803, 1365
HhaI	GCGC	3 cut(s)	59, 430, 2524
Hin1I	GRCGYC	1 cut(s)	57
Hin6I	GCGC	3 cut(s)	57, 428, 2522
HinP1I	GCGC	3 cut(s)	57, 428, 2522
HincII	GTYRAC	3 cut(s)	159, 366, 2794
HindII	GTYRAC	3 cut(s)	159, 366, 2794
HindIII	AAGCTT	3 cut(s)	466, 1023, 2741
HpaI	GTTAAC	1 cut(s)	2794
HpaII	CCGG	4 cut(s)	60, 200, 803, 1365
HphI	GGTGA	7 cut(s)	725, 1233, 1280, 1913, 1971, 2570, 2630
Hpy166II	GTNNAC	8 cut(s)	159, 366, 825, 842, 989, 1235, 2794, 2866
Hpy8I	GTNNAC	8 cut(s)	159, 366, 825, 842, 989, 1235, 2794, 2866
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	9 cut(s)	274, 878, 1386, 1446, 1782, 1826, 1968, 2433, 3037
HpyF10VI	GCNNNNNNNGC	9 cut(s)	196, 241, 284, 293, 434, 1087, 1158, 1167, 1287
HpyF3I	CTNAG	9 cut(s)	83, 393, 1298, 1323, 1465, 2427, 2443, 2739, 2937
Hsp92I	GRCGYC	1 cut(s)	57
HspAI	GCGC	3 cut(s)	57, 428, 2522
KasI	GGCGCC	1 cut(s)	56
KflI	GGGWCCC	1 cut(s)	356
KroI	GCCGGC	2 cut(s)	59, 1364
KroNI	GCCGGC	2 cut(s)	61, 1366
Ksp22I	TGATCA	1 cut(s)	1096
KspAI	GTTAAC	1 cut(s)	2794
LmnI	GCTCC	6 cut(s)	196, 817, 1481, 2465, 2473, 2964
Lsp1109I	GCAGC	6 cut(s)	412, 424, 491, 938, 1077, 2268
LweI	GCATC	6 cut(s)	274, 1179, 1192, 1277, 1786, 2188
MaeIII	GTNAC	4 cut(s)	592, 913, 2677, 2813
MfeI	CAATTG	2 cut(s)	1815, 2625
MflI	RGATCY	6 cut(s)	4, 743, 752, 1110, 1489, 2114
MhlI	GDGCHC	5 cut(s)	108, 814, 1237, 1571, 2470
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	2 cut(s)	910, 3032
MmeI	TCCRAC	2 cut(s)	839, 2214
Mph1103I	ATGCAT	2 cut(s)	766, 1207
MreI	CGCCGGCG	1 cut(s)	59
MroNI	GCCGGC	2 cut(s)	59, 1364
MroXI	GAANNNNTTC	3 cut(s)	685, 2048, 2925
MseI	TTAA	9 cut(s)	318, 458, 728, 1358, 1581, 1691, 2021, 2793, 2903
MspA1I	CMGCKG	5 cut(s)	82, 437, 482, 893, 1090
MspI	CCGG	4 cut(s)	60, 200, 803, 1365
MspR9I	CCNGG	3 cut(s)	666, 984, 2286
MunI	CAATTG	2 cut(s)	1815, 2625
MvaI	CCWGG	3 cut(s)	666, 984, 2286
MwoI	GCNNNNNNNGC	9 cut(s)	196, 241, 284, 293, 434, 1087, 1158, 1167, 1287
NaeI	GCCGGC	2 cut(s)	61, 1366
NarI	GGCGCC	1 cut(s)	57
NcoI	CCATGG	2 cut(s)	162, 490
NdeI	CATATG	1 cut(s)	2683
NgoMIV	GCCGGC	2 cut(s)	59, 1364
NmuCI	GTSAC	2 cut(s)	913, 2813
NsbI	TGCGCA	2 cut(s)	429, 2523
NsiI	ATGCAT	2 cut(s)	766, 1207
NspI	RCATGY	5 cut(s)	1209, 1526, 2702, 2831, 3043
PaeR7I	CTCGAG	2 cut(s)	1263, 2121
PagI	TCATGA	1 cut(s)	2878
PciI	ACATGT	2 cut(s)	1522, 3039
PcsI	WCGNNNNNNNCGW	2 cut(s)	164, 246
PdiI	GCCGGC	2 cut(s)	61, 1366
PdmI	GAANNNNTTC	3 cut(s)	685, 2048, 2925
PflMI	CCANNNNNTGG	2 cut(s)	971, 2477
PfoI	TCCNGGA	1 cut(s)	2284
PinAI	ACCGGT	1 cut(s)	802
PkrI	GCNGC	8 cut(s)	24, 261, 427, 439, 481, 928, 1092, 2258
PleI	GAGTC	2 cut(s)	910, 3031
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	2 cut(s)	910, 3031
PpuMI	RGGWCCY	1 cut(s)	356
PscI	ACATGT	2 cut(s)	1522, 3039
PshAI	GACNNNNGTC	2 cut(s)	994, 2514
Psp124BI	GAGCTC	1 cut(s)	2470
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	3 cut(s)	664, 982, 2284
PspFI	CCCAGC	2 cut(s)	78, 697
PspGI	CCWGG	3 cut(s)	664, 982, 2284
PspOMI	GGGCCC	1 cut(s)	104
PspPI	GGNCC	6 cut(s)	104, 105, 356, 842, 1372, 2912
PspPPI	RGGWCCY	1 cut(s)	356
PspXI	VCTCGAGB	1 cut(s)	1263
PsrI	GAACNNNNNNTAC	2 cut(s)	1173, 1205
PsuI	RGATCY	6 cut(s)	4, 743, 752, 1110, 1489, 2114
PvuII	CAGCTG	3 cut(s)	82, 482, 1090
RsaI	GTAC	4 cut(s)	774, 1384, 2071, 2867
RsaNI	GTAC	4 cut(s)	773, 1383, 2070, 2866
SacI	GAGCTC	1 cut(s)	2470
SalI	GTCGAC	1 cut(s)	157
SaqAI	TTAA	9 cut(s)	318, 458, 728, 1358, 1581, 1691, 2021, 2793, 2903
SatI	GCNGC	8 cut(s)	23, 260, 426, 438, 480, 927, 1091, 2257
Sau96I	GGNCC	6 cut(s)	104, 105, 356, 842, 1372, 2912
SchI	GAGTC	2 cut(s)	910, 3032
ScrFI	CCNGG	3 cut(s)	666, 984, 2286
SduI	GDGCHC	5 cut(s)	108, 814, 1237, 1571, 2470
SfaNI	GCATC	6 cut(s)	274, 1179, 1192, 1277, 1786, 2188
SfcI	CTRYAG	1 cut(s)	519
SfoI	GGCGCC	1 cut(s)	58
Sfr274I	CTCGAG	2 cut(s)	1263, 2121
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	4 cut(s)	356, 842, 1372, 2912
SlaI	CTCGAG	2 cut(s)	1263, 2121
SmlI	CTYRAG	3 cut(s)	834, 1263, 2121
SmoI	CTYRAG	3 cut(s)	834, 1263, 2121
SpeI	ACTAGT	1 cut(s)	2534
SspDI	GGCGCC	1 cut(s)	56
SspI	AATATT	2 cut(s)	1579, 2017
SstI	GAGCTC	1 cut(s)	2470
StyD4I	CCNGG	3 cut(s)	664, 982, 2284
StyI	CCWWGG	6 cut(s)	26, 162, 264, 490, 2397, 2512
TaqI	TCGA	6 cut(s)	158, 175, 240, 1264, 2122, 2458
TatI	WGTACW	3 cut(s)	772, 1382, 2069
TauI	GCSGC	2 cut(s)	25, 262
Tru1I	TTAA	9 cut(s)	318, 458, 728, 1358, 1581, 1691, 2021, 2793, 2903
Tru9I	TTAA	9 cut(s)	318, 458, 728, 1358, 1581, 1691, 2021, 2793, 2903
TscAI	CASTG	9 cut(s)	664, 918, 1054, 1283, 1654, 2560, 2644, 2818, 2950
TseFI	GTSAC	2 cut(s)	913, 2813
TseI	GCWGC	6 cut(s)	425, 437, 479, 926, 1090, 2256
Tsp45I	GTSAC	2 cut(s)	913, 2813
TspGWI	ACGGA	4 cut(s)	209, 1673, 1880, 2977
TspRI	CASTG	9 cut(s)	664, 918, 1054, 1283, 1654, 2560, 2644, 2818, 2950
Van91I	CCANNNNNTGG	2 cut(s)	971, 2477
VneI	GTGCAC	1 cut(s)	1233
VpaK11BI	GGWCC	4 cut(s)	356, 842, 1372, 2912
XapI	RAATTY	7 cut(s)	171, 781, 940, 1257, 1875, 2211, 2485
XbaI	TCTAGA	1 cut(s)	2147
XceI	RCATGY	5 cut(s)	1209, 1526, 2702, 2831, 3043
XcmI	CCANNNNNNNNNTGG	2 cut(s)	271, 2717
XhoI	CTCGAG	2 cut(s)	1263, 2121
XmaJI	CCTAGG	1 cut(s)	26
XmiI	GTMKAC	2 cut(s)	158, 824
XmnI	GAANNNNTTC	3 cut(s)	685, 2048, 2925
Zsp2I	ATGCAT	2 cut(s)	766, 1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.