Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004984

Physical Location & Seq

Genomic Coordinates Forward (+)

15872425 .. 15875010

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGTGTGCACAGTCATCTAACCAGAGAGGAATTCCTAGAGGTGAGTGGCACTGCATGAGATGCCTGTCACTGAGCAATGGAAAGCCCTTGCCTCCGAAGTATGGACGTGTGATGAGAAGTAATATACAAGTAAAAGTTCCTTCTAACACAGCTGGAATTCAAACGTCCTTGGAGAATAAACTGGAAAATTTAGATCCAAGGGTCAACCAGCCGAAGATAGCTGCAAATGGAAGTTCTGTTTTGCAGAATACTGCTGGTATAGGTGGTGGGAGCAGCAATCACATTGAGTCAGCACCAGATCTAAAGATTTTAACTGCAAAAGAATCTCAACGGAAGAATCTCGTATCAAGCAGTAAAAATAGGGATGAGAAACCTCTTTCTGGAAGTTACCCGTCAAGTGAAAGATCTGAGGAGAAATGTTCTGAATCAGACCCTCATTCTGAACCAAAAGAAACTACTGAATCATCTAGAGTTGAAGATTCTGAATCAATTGCAGAATCTCCTGCTGAGTCAAAACCTCCTCTTGAACCAAAAGAAACTACTGAATCATCTGGAGTTGAAGAGAGACCTTCTGAATCAAAAGCAGAACCTGCTGCTGAATCAAAAGCGGAGTGCCCTGCTGAATCAAAAGCAGAGCCTACTGCTGAACCAAAAGAAACTACTGGATCATTTAGAGTTGAAGAGATACCTGGATCAAAAGCAGAACATCCTTCTGAATCAAAAGCGGAGCTTCCTGCTGAATCAAAAGCAGAGCCTCTTGCTGAACCAAAAGAAACTACTGAATCATCTAGAGTTGAAGAGAGACCTTCTGATTCAAAAGCAGAGCCTCCTGTTGAACCAAAAGAAACTACTGAACCATCTAGAGTTGAAGAGATACATTTTGAATCAAAACCAGAAGCTTCTGCTGATTTTTCCAACAAAGATACTGATAAGTCCGATCATTCCCAACCCCCTTCCAACACACAAGTTGTGGACGGTGCTGGGCTGCCCAACTCTTCAGAAGTTCCATCAATGATATTCCATGACCAGAATTCTGCATTGGAAGACTCAGATACTTCTCACTCTGTAGGAAACTCTGGCTCCTCTTTAAGATATGACATCAAACGGAATGACCAAAGTGGTGCACAAGCAAATACTTGTGAAATTTCTGTAGCTAGTGGTAGGTCTCTAGAGCATTTCGGTTTTTCTTCAGATGGCTTGAAAGCTGTTCAATGGATTGGCGATGCAGTTCAAGGTGGTGATGAAAAAATATATTACCATACTTGTTGCATTGATGGGGTAACATATCAACTGCGAGATCATGCTCTTTTCCAGTCTAGTCATGGAAAATTGATACCCTCGAAGCTTCAGTCCATGTGGGAGGATAGAAAAACTGGGTCAAAGTGGGCTATTGTCAACAGGTGCTACTTTCCTGGTGACTTACCAGAGAACGTTGGTCGCCCATCTACACCTGAAAGCAATGAGGTCTATGAGTCTAATCATGATAGCAATGTAATGGCTGGTTTGATTCGTGGTCCTTGTGAAGTTCTTTCTCCTGCTAAGTTCAGTGTAGAAACTGAAAGACGGAGCCAGTTAGGACATGAGGCAGATAATGAATTACAACCAATCTTCCTCTGCAAATGGATTTATGATGAGTTTAAAGGGGTATTGGAGCCTGTTCCCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

556

Amino Acids

60.49

Weight (kDa)

4.96

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50620 AT3G20280 AT3G20280 AT3G20280 AT3G20280 AT3G20280
fragaria_vesca	FvH4_3g23572 FvH4_3g23572 FvH4_3g23572 FvH4_3g23572
malus_domestica	MD03G1193000.v1.1 MD11G1209200.v1.1
prunus_persica	Prupe.4G224000_v2.0.a1 Prupe.4G224000_v2.0.a1
pyrus_communis	pycom03g14530 pycom03g14540 pycom11g18420
rosa_chinensis	RchiOBHm_Chr5g0041571
rosa_laevigata	RLG00000034083
rosa_multiflora	Rmu_sc0003051.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038930
rosa_rugosa	Rorug05G0193800 Rorug05G0193900 Rorug05G0193900
rosa_samantha	Rh5AG279500 Rh5BG283900 Rh5BG284800 Rh5CG316800 Rh5DG293600
rosa_wichuraiana	Rw5G026310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	598
AciI	CCGC	2 cut(s)	608, 725
AclI	AACGTT	1 cut(s)	1431
AclWI	GGATC	3 cut(s)	188, 673, 700
AcsI	RAATTY	5 cut(s)	30, 156, 187, 1030, 1143
AcuI	CTGAAG	3 cut(s)	981, 1173, 1331
AfiI	CCNNNNNNNGG	2 cut(s)	101, 380
AflIII	ACRYGT	1 cut(s)	106
AjiI	CACGTC	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	688, 1411
AjuI	GAANNNNNNNTTGG	2 cut(s)	1022, 1054
AluBI	AGCT	7 cut(s)	152, 221, 730, 899, 1154, 1205, 1345
AluI	AGCT	7 cut(s)	152, 221, 730, 899, 1154, 1205, 1345
Alw21I	GWGCWC	2 cut(s)	10, 1126
Alw26I	GTCTC	3 cut(s)	559, 796, 1170
Alw44I	GTGCAC	2 cut(s)	6, 1122
AlwI	GGATC	3 cut(s)	188, 673, 700
AlwNI	CAGNNNCTG	1 cut(s)	590
Ama87I	CYCGRG	1 cut(s)	1661
ApaLI	GTGCAC	2 cut(s)	6, 1122
ApeKI	GCWGC	4 cut(s)	221, 273, 593, 985
ApoI	RAATTY	5 cut(s)	30, 156, 187, 1030, 1143
ArsI	GACNNNNNNTTYG	2 cut(s)	1334, 1366
AspS9I	GGNCC	1 cut(s)	1514
AsuHPI	GGTGA	3 cut(s)	53, 1250, 1427
AvaI	CYCGRG	1 cut(s)	1661
AvaII	GGWCC	1 cut(s)	1514
BaeGI	GKGCMC	3 cut(s)	10, 617, 1126
BbsI	GAAGAC	1 cut(s)	1050
Bbv12I	GWGCWC	2 cut(s)	10, 1126
BbvI	GCAGC	4 cut(s)	208, 285, 580, 972
BccI	CCATC	5 cut(s)	865, 1015, 1187, 1268, 1450
BciT130I	CCWGG	2 cut(s)	690, 1413
BcoDI	GTCTC	3 cut(s)	559, 796, 1170
BfaI	CTAG	7 cut(s)	36, 468, 789, 861, 1155, 1169, 1317
BfmI	CTRYAG	2 cut(s)	1065, 1149
BfuAI	ACCTGC	1 cut(s)	598
BglII	AGATCT	2 cut(s)	298, 404
BisI	GCNGC	4 cut(s)	222, 274, 594, 986
BlsI	GCNGC	4 cut(s)	223, 275, 595, 987
Bme1390I	CCNGG	2 cut(s)	690, 1413
Bme18I	GGWCC	1 cut(s)	1514
BmeT110I	CYCGRG	1 cut(s)	1661
BmgBI	CACGTC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	1514
BmiI	GGNNCC	3 cut(s)	1081, 1568, 1653
BmrFI	CCNGG	2 cut(s)	690, 1413
BmrI	ACTGGG	1 cut(s)	1383
BmsI	GCATC	2 cut(s)	50, 1213
BmuI	ACTGGG	1 cut(s)	1383
BpiI	GAAGAC	1 cut(s)	1050
BpmI	CTGGAG	1 cut(s)	573
BsaI	GGTCTC	3 cut(s)	559, 796, 1170
BsaJI	CCNNGG	2 cut(s)	168, 197
BsaXI	ACNNNNNCTCC	2 cut(s)	1064, 1094
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 380
Bse1I	ACTGG	5 cut(s)	186, 667, 1312, 1378, 1570
Bse3DI	GCAATG	3 cut(s)	82, 1465, 1495
BseBI	CCWGG	2 cut(s)	690, 1413
BseDI	CCNNGG	2 cut(s)	168, 197
BseGI	GGATG	2 cut(s)	370, 706
BseLI	CCNNNNNNNGG	2 cut(s)	101, 380
BseMI	GCAATG	3 cut(s)	82, 1465, 1495
BseMII	CTCAG	4 cut(s)	62, 399, 498, 1062
BseNI	ACTGG	5 cut(s)	186, 667, 1312, 1378, 1570
BseRI	GAGGAG	3 cut(s)	425, 510, 1072
BseSI	GKGCMC	3 cut(s)	10, 617, 1126
BseXI	GCAGC	4 cut(s)	208, 285, 580, 972
BseYI	CCCAGC	1 cut(s)	980
BsiHKAI	GWGCWC	2 cut(s)	10, 1126
BsiHKCI	CYCGRG	1 cut(s)	1661
BslI	CCNNNNNNNGG	2 cut(s)	101, 380
BsmAI	GTCTC	3 cut(s)	559, 796, 1170
Bso31I	GGTCTC	3 cut(s)	559, 796, 1170
BsoBI	CYCGRG	1 cut(s)	1661
Bsp1286I	GDGCHC	3 cut(s)	10, 617, 1126
Bsp143I	GATC	7 cut(s)	193, 298, 404, 665, 692, 937, 1297
BspACI	CCGC	2 cut(s)	608, 725
BspCNI	CTCAG	4 cut(s)	63, 400, 499, 1061
BspHI	TCATGA	1 cut(s)	1480
BspLI	GGNNCC	3 cut(s)	1081, 1568, 1653
BspMI	ACCTGC	1 cut(s)	598
BspPI	GGATC	3 cut(s)	188, 673, 700
BspTNI	GGTCTC	3 cut(s)	559, 796, 1170
BsrDI	GCAATG	3 cut(s)	82, 1465, 1495
BsrI	ACTGG	5 cut(s)	186, 667, 1312, 1378, 1570
BssECI	CCNNGG	2 cut(s)	168, 197
BssMI	GATC	7 cut(s)	193, 298, 404, 665, 692, 937, 1297
BssT1I	CCWWGG	2 cut(s)	168, 197
Bst2UI	CCWGG	2 cut(s)	690, 1413
Bst4CI	ACNGT	2 cut(s)	12, 977
Bst6I	CTCTTC	5 cut(s)	555, 675, 792, 864, 1000
BstAPI	GCANNNNNTGC	2 cut(s)	60, 590
BstDEI	CTNAG	5 cut(s)	71, 408, 507, 1048, 1539
BstF5I	GGATG	2 cut(s)	370, 706
BstKTI	GATC	7 cut(s)	196, 301, 407, 668, 695, 940, 1300
BstMAI	GTCTC	3 cut(s)	559, 796, 1170
BstMBI	GATC	7 cut(s)	193, 298, 404, 665, 692, 937, 1297
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 590
BstNI	CCWGG	2 cut(s)	690, 1413
BstSCI	CCNGG	2 cut(s)	688, 1411
BstSFI	CTRYAG	2 cut(s)	1065, 1149
BstSLI	GKGCMC	3 cut(s)	10, 617, 1126
BstV1I	GCAGC	4 cut(s)	208, 285, 580, 972
BstV2I	GAAGAC	1 cut(s)	1050
BstX2I	RGATCY	3 cut(s)	193, 298, 404
BstYI	RGATCY	3 cut(s)	193, 298, 404
BtgZI	GCGATG	1 cut(s)	1236
BtrI	CACGTC	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	370, 706
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	3 cut(s)	49, 68, 1552
BveI	ACCTGC	1 cut(s)	598
CaiI	CAGNNNCTG	1 cut(s)	590
CciI	TCATGA	1 cut(s)	1480
Cfr13I	GGNCC	1 cut(s)	1514
CviAII	CATG	7 cut(s)	55, 1022, 1301, 1322, 1354, 1481, 1580
DdeI	CTNAG	5 cut(s)	71, 408, 507, 1048, 1539
DpnI	GATC	7 cut(s)	195, 300, 406, 667, 694, 939, 1299
DpnII	GATC	7 cut(s)	193, 298, 404, 665, 692, 937, 1297
DraI	TTTAAA	1 cut(s)	1639
Eam1104I	CTCTTC	5 cut(s)	555, 675, 792, 864, 1000
EarI	CTCTTC	5 cut(s)	555, 675, 792, 864, 1000
Eco130I	CCWWGG	2 cut(s)	168, 197
Eco31I	GGTCTC	3 cut(s)	559, 796, 1170
Eco47I	GGWCC	1 cut(s)	1514
Eco57I	CTGAAG	3 cut(s)	981, 1173, 1331
Eco88I	CYCGRG	1 cut(s)	1661
EcoRI	GAATTC	3 cut(s)	30, 156, 1030
EcoRII	CCWGG	2 cut(s)	688, 1411
EcoT14I	CCWWGG	2 cut(s)	168, 197
ErhI	CCWWGG	2 cut(s)	168, 197
FaeI	CATG	7 cut(s)	58, 1025, 1304, 1325, 1357, 1484, 1583
FalI	AAGNNNNNCTT	2 cut(s)	714, 746
FatI	CATG	7 cut(s)	54, 1021, 1300, 1321, 1353, 1480, 1579
Fnu4HI	GCNGC	4 cut(s)	222, 274, 594, 986
FokI	GGATG	2 cut(s)	377, 693
Fsp4HI	GCNGC	4 cut(s)	222, 274, 594, 986
FspBI	CTAG	7 cut(s)	36, 468, 789, 861, 1155, 1169, 1317
GluI	GCNGC	4 cut(s)	222, 274, 594, 986
GsaI	CCCAGC	1 cut(s)	984
GsuI	CTGGAG	1 cut(s)	573
Hin1II	CATG	7 cut(s)	58, 1025, 1304, 1325, 1357, 1484, 1583
HincII	GTYRAC	2 cut(s)	205, 1396
HindII	GTYRAC	2 cut(s)	205, 1396
HindIII	AAGCTT	2 cut(s)	897, 1343
HphI	GGTGA	3 cut(s)	53, 1250, 1427
Hpy166II	GTNNAC	5 cut(s)	8, 205, 973, 1124, 1396
Hpy188III	TCNNGA	9 cut(s)	381, 468, 524, 552, 789, 861, 1169, 1481, 1661
Hpy8I	GTNNAC	5 cut(s)	8, 205, 973, 1124, 1396
HpyAV	CCTTC	5 cut(s)	150, 579, 720, 816, 963
HpyCH4III	ACNGT	2 cut(s)	12, 977
HpyCH4IV	ACGT	3 cut(s)	106, 164, 1431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 590
HpyF3I	CTNAG	5 cut(s)	71, 408, 507, 1048, 1539
HpySE526I	ACGT	3 cut(s)	106, 164, 1431
Hsp92II	CATG	7 cut(s)	58, 1025, 1304, 1325, 1357, 1484, 1583
Kzo9I	GATC	7 cut(s)	193, 298, 404, 665, 692, 937, 1297
LmnI	GCTCC	5 cut(s)	270, 727, 1085, 1566, 1651
Lsp1109I	GCAGC	4 cut(s)	208, 285, 580, 972
LweI	GCATC	2 cut(s)	50, 1213
MaeI	CTAG	7 cut(s)	36, 468, 789, 861, 1155, 1169, 1317
MaeII	ACGT	3 cut(s)	106, 164, 1431
MaeIII	GTNAC	4 cut(s)	66, 386, 1279, 1415
MalI	GATC	7 cut(s)	195, 300, 406, 667, 694, 939, 1299
MboI	GATC	7 cut(s)	193, 298, 404, 665, 692, 937, 1297
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	3 cut(s)	193, 298, 404
MhlI	GDGCHC	3 cut(s)	10, 617, 1126
MluCI	AATT	8 cut(s)	30, 156, 187, 489, 1030, 1143, 1328, 1595
MlyI	GAGTC	4 cut(s)	296, 518, 1040, 1481
MmeI	TCCRAC	2 cut(s)	939, 981
MseI	TTAA	3 cut(s)	311, 1088, 1638
MspA1I	CMGCKG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	690, 1413
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	2 cut(s)	690, 1413
MwoI	GCNNNNNNNGC	2 cut(s)	60, 590
NdeII	GATC	7 cut(s)	193, 298, 404, 665, 692, 937, 1297
NlaIII	CATG	7 cut(s)	58, 1025, 1304, 1325, 1357, 1484, 1583
NlaIV	GGNNCC	3 cut(s)	1081, 1568, 1653
NmuCI	GTSAC	2 cut(s)	66, 1415
PagI	TCATGA	1 cut(s)	1480
PkrI	GCNGC	4 cut(s)	223, 275, 595, 987
PleI	GAGTC	4 cut(s)	295, 517, 1040, 1480
PpsI	GAGTC	4 cut(s)	295, 517, 1040, 1480
Psp1406I	AACGTT	1 cut(s)	1431
Psp6I	CCWGG	2 cut(s)	688, 1411
PspFI	CCCAGC	1 cut(s)	980
PspGI	CCWGG	2 cut(s)	688, 1411
PspN4I	GGNNCC	3 cut(s)	1081, 1568, 1653
PspPI	GGNCC	1 cut(s)	1514
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	3 cut(s)	193, 298, 404
PvuII	CAGCTG	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	311, 1088, 1638
SatI	GCNGC	4 cut(s)	222, 274, 594, 986
Sau3AI	GATC	7 cut(s)	193, 298, 404, 665, 692, 937, 1297
Sau96I	GGNCC	1 cut(s)	1514
SchI	GAGTC	4 cut(s)	296, 518, 1040, 1481
ScrFI	CCNGG	2 cut(s)	690, 1413
SduI	GDGCHC	3 cut(s)	10, 617, 1126
SfaNI	GCATC	2 cut(s)	50, 1213
SfcI	CTRYAG	2 cut(s)	1065, 1149
SinI	GGWCC	1 cut(s)	1514
Sse9I	AATT	8 cut(s)	30, 156, 187, 489, 1030, 1143, 1328, 1595
SsiI	CCGC	2 cut(s)	608, 725
SspMI	CTAG	7 cut(s)	36, 468, 789, 861, 1155, 1169, 1317
StyD4I	CCNGG	2 cut(s)	688, 1411
StyI	CCWWGG	2 cut(s)	168, 197
TaaI	ACNGT	2 cut(s)	12, 977
TaiI	ACGT	3 cut(s)	109, 167, 1434
TaqI	TCGA	1 cut(s)	1340
TasI	AATT	8 cut(s)	30, 156, 187, 489, 1030, 1143, 1328, 1595
Tru1I	TTAA	3 cut(s)	311, 1088, 1638
Tru9I	TTAA	3 cut(s)	311, 1088, 1638
TscAI	CASTG	3 cut(s)	56, 75, 1552
TseFI	GTSAC	2 cut(s)	66, 1415
TseI	GCWGC	4 cut(s)	221, 273, 593, 985
Tsp45I	GTSAC	2 cut(s)	66, 1415
TspDTI	ATGAA	2 cut(s)	1257, 1608
TspGWI	ACGGA	3 cut(s)	346, 1120, 1579
TspRI	CASTG	3 cut(s)	56, 75, 1552
VneI	GTGCAC	2 cut(s)	6, 1122
VpaK11BI	GGWCC	1 cut(s)	1514
XapI	RAATTY	5 cut(s)	30, 156, 187, 1030, 1143
XbaI	TCTAGA	4 cut(s)	467, 788, 860, 1168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1319
XspI	CTAG	7 cut(s)	36, 468, 789, 861, 1155, 1169, 1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.