Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004984

Physical Location & Seq

Genomic Coordinates Reverse (-)

36467632 .. 36472792

Gene Structure 5161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034083

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3111 bp

ATGGATCTGGCCGCAGACGAGGCGCCTAGGGTTGAGAAGAGGCCGATTCAGAACGGCGCCAGCGGAGAATTGGGGCCCCAGCTGAGCAAGAAGCCCAGATTGGGGCCCGATTGCGAGAGGGACTTGAAGAGAGTGGCGGAGATTGTGCTGGCTTTGTCGACCATGGCGAAAATTCGAGGCGGAGAGAAGCCGACGGAGCCGGAGATTGGACTTATGGAGGAGGCTAGGGCAAAGCTGGTGGAGCTGTGCGAGGGTTTGCCGCCCAAGGAGATTGTGGCGAAGGATGCGATTTCGGCTGTGATTGAGGATTTGGGGCTTAATGCCAAGCTCAATGAACAGAGATTAGGGTTTCGGGGTCCCAAGTTGACGATTGCGGAGAAGTTTGCACTCACTAAGAGGAAGATGGATGAATCCAAGAAATATGCTGCGCAAACCGCTGCATATCCATCTCAACCATTAAAAACAAGCTTCAATGTATCAGCTGAAAACCATGGGTTGCCACATACTGTTCGTATTTCAACAGATAACCCAAACCATGCACCTATTTCAACTGGTGGTTTCGCAGCGTCTCCTCTTGTTCATGTTTCCACAGTAACTCCTACATCTGCACAGTATCAGTTGCCCACCAGCGAAATTAGAACAACTATGGTTTCTGGCAGTGTGCCTGGTAGTCATCTGGGAAGAGATTCATCTTCCCCAGCATTTCCTAGAGGTGAAAGAGTGCAGTTAAGAACTGATGGAGGATCCAATGGATCTTCTTATGCATATCAAGTACAAGCAAATTCTTCGGCAAATCATCCACCGGTTAGTGCTCCAACTTGGTCTACACAAACTCAAGGTGGACCAGAAAGCAAGGTGCCAAATCATACTTCTGTCAAGGTTGAAGGAACCGCTGGTATGAGTAAGCCATCAGTGACTCCTCTAGCAGCACGAGATCAGAATTCTAGGCCATTTGCCTCTCAACCATCTTCTGGACATTTGCCTGGTGGACACCAGTCTTCACAAAAGATTCGCTTTGTTCAAGCTTCTTCAGTTCCTAATAATCACACTGAAATTGCGAGAATTATTCAGAAATTATTGCAACCACAGCTGCCTGATCATCCCACATGGATCCCTCCATCAAGGGATTATATGAGTAAGGCTTTGACTTGCCAAACTTGCCAGATTAGCATCAATGAGGTAGATAATGTTCTTATTTGTGATGCATGTGAGAAAGGATATCACATTACATGTGCACAATCACCTAACCAGAGAGGAATTCCTCGAGGTGAATGGCACTGCACAAGATGCTTGTCACTAAGCAATGGAAAGCCTTTGCCTCCTAAGTATGGGCGTGTTATGAGAAGTAATATACAATTAAAAGCCGGCACGGTCCCTTCCAGTACAGTCGCTTCCAGCACAGTTCCTTCCAGTACGGTCGCGTCCAGCACAGTCCCTTCCAGTACGGTCGCATCCAGCACAGTCCCTTCCAGTACTGTCCCTTCCAGCATGGCTGTAGTTCAGATGTCCTCAGGGAATAAAGTGGGAGCTTTAGATCCAAAGGTCTATGAGCAGAAGATAAATGCACATGTAAGCTCTGTTTTCCAGAATCCTACTCATTTGGTTCGTGTGGGCACAAACAATATTAAGTCAGCAGCAGATTCAAAAGTTTCATTTGCAAGAGAAATGCAAGGGAATAATTTACCATCCAGCAGTGTAAATACGGATGAGAAACCTCTTTCTGGAAGTTTCCTGTTAAGTGAAACATCATCTCAACAAATAGGTAATTCTGAATTATCTACGTCGGACAAGAGACCTATGGAATCAAGAGCAGAACCTTCTTCTGATTTGTCAAACAAAGATGCTGATCCCAAGATTTCAACTGCAAGTGAAACTGAAGGGACTAATTTTCCATCGAGCAGTAAAACTACGGATGAGAAAATTCTTTCTGGAAGTTTCCAGTCTGGTGAAAGGACATCTCAACAGAGAGATATTTCTGAATCATCCAAATCTGACCAGAGACCTTCTGAATCAAGAGCAGAATCACCTACTGATTTACCCAACAAAGATTCTGATCCAAATATTTTAAGTGCAACAGAAACACAAGGGAATAATTTCCCATCAAGCAGTCAAAGTACAGATGAGAAACCTCTTTCTGGAAGTTTCATGTCTAGTGAAAGATCCTCTCGAGAAATAAATAATTCTGAATCATCTAGACTATTTGAATCAAGCACAGAGCCTCCTGCTGATTTATCCAACAAAGATGCTGATTCAAAAATTTCAAATGCAAGAGAAATGCAAGGTAATAATTTCTCAACAAGCAGCAAGGGTATAAATGAGAAACCTTTTCCTGGAAGTTTCCCGTCCAGCGAAAGTTCATCTCAACAAACTGATAATTCTGAATTATCTATATTAGATAAGATACCTTATGAATCAAAAACAGAGCCTCCTGCTGATTTACCCAATGAAGATATTGATAAGTCTGTTCATTCTCAGCCAGTTTCTAACTCAGAAGTTGTTGATCGAGCAGGAGCTCCAAACTGTGGAGAAAATTCTAGCTGTTCTATTAGAGACGACCAAGGTCTTGCGCAGGAAAATACTAGTGAAAGTCTTGTAGTCAGTGGTGGGGCGCTAGAGCATACTGGATTTACTTCTGATGGCTTGCGACCTGTTGAATGGATCGGTGATTCAATTCAAGATGTTAGTGAAAAAAACTTCTATCGTTCTTGTCGCATTGATGGAGTAACATATGAGCTACAAGAACATGCTCTCTTCCAGTCTAGTCATGGCAAATTGATACCCTCTAAGCTTCAGTCAATGTGGGAGGATAGGAAAACTGGGTCAAAGTGGGTTATAGTTAACAGTTGCTACTTTCCTAGTGACTTACCAGAGCATGTTAGTCGTCCATCTACACCTGAAAGTAATGAGGTGTACGAATCTAATCATGAAACAACTGTAATGGCGGGCTTAATTCAAGGTCCATGTGAAGTTCTTCCTCCTGCTAAGTTCAGTGAAGAAATTGAAAGACGGAGCCAATTAGGACATGATACAAATAATGAACTACGACCAGTTTTCCTGTGCAAATGGAATTATGATGAGTTCGAAGGGTTATTGCAGACTGTTTCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

1037

Amino Acids

111.7

Weight (kDa)

5.63

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7797	PF25073	29 - 85	7.7e-23	Domain of unknown function (DUF7797)
PHD	PF00628	384 - 430	2.2e-06	PHD-finger
BAH	PF01426	929 - 1026	2.3e-09	BAH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50620 AT3G20280 AT3G20280 AT3G20280 AT3G20280 AT3G20280
fragaria_vesca	FvH4_3g23572 FvH4_3g23572 FvH4_3g23572 FvH4_3g23572
malus_domestica	MD03G1193000.v1.1 MD11G1209200.v1.1
prunus_persica	Prupe.4G224000_v2.0.a1 Prupe.4G224000_v2.0.a1
pyrus_communis	pycom03g14530 pycom03g14540 pycom11g18420
rosa_chinensis	RchiOBHm_Chr5g0041571
rosa_laevigata	RLG00000034083
rosa_multiflora	Rmu_sc0003051.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038930
rosa_rugosa	Rorug05G0193800 Rorug05G0193900 Rorug05G0193900
rosa_samantha	Rh5AG279500 Rh5BG283900 Rh5BG284800 Rh5CG316800 Rh5DG293600
rosa_wichuraiana	Rw5G026310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1263
Acc16I	TGCGCA	2 cut(s)	429, 2568
AccB1I	GGYRCC	3 cut(s)	22, 56, 856
AccB7I	CCANNNNNTGG	2 cut(s)	971, 2522
AccI	GTMKAC	2 cut(s)	158, 824
AccII	CGCG	1 cut(s)	1421
AciI	CCGC	9 cut(s)	12, 63, 137, 180, 260, 374, 435, 891, 2942
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	7 cut(s)	171, 781, 940, 1257, 1920, 2256, 2530
AcuI	CTGAAG	3 cut(s)	1014, 1896, 2774
AcyI	GRCGYC	2 cut(s)	23, 57
AfaI	GTAC	7 cut(s)	774, 1384, 1414, 1444, 1474, 2116, 2912
AfiI	CCNNNNNNNGG	9 cut(s)	101, 102, 206, 971, 1328, 1721, 2135, 2330, 2522
AflIII	ACRYGT	2 cut(s)	1229, 1567
AgeI	ACCGGT	1 cut(s)	802
AhlI	ACTAGT	1 cut(s)	2579
AjnI	CCWGG	3 cut(s)	664, 982, 2329
AjuI	GAANNNNNNNTTGG	4 cut(s)	83, 115, 853, 885
Alw21I	GWGCWC	3 cut(s)	814, 1237, 2515
Alw26I	GTCTC	4 cut(s)	573, 1786, 1993, 2544
Alw44I	GTGCAC	1 cut(s)	1233
Ama87I	CYCGRG	2 cut(s)	1263, 2166
AoxI	GGCC	5 cut(s)	9, 41, 74, 104, 947
ApaI	GGGCCC	2 cut(s)	78, 108
ApaLI	GTGCAC	1 cut(s)	1233
ApeKI	GCWGC	7 cut(s)	425, 437, 563, 926, 1090, 1634, 2301
ApoI	RAATTY	7 cut(s)	171, 781, 940, 1257, 1920, 2256, 2530
AsiGI	ACCGGT	1 cut(s)	802
Asp700I	GAANNNNTTC	3 cut(s)	685, 2093, 2970
AspA2I	CCTAGG	1 cut(s)	26
AspLEI	GCGC	5 cut(s)	25, 59, 430, 2569, 2611
AspS9I	GGNCC	8 cut(s)	74, 75, 104, 105, 356, 842, 1372, 2957
AsuHPI	GGTGA	6 cut(s)	725, 1233, 1280, 1958, 2016, 2675
AsuII	TTCGAA	1 cut(s)	3081
AvaI	CYCGRG	2 cut(s)	1263, 2166
AvaII	GGWCC	4 cut(s)	356, 842, 1372, 2957
AvrII	CCTAGG	1 cut(s)	26
AxyI	CCTNAGG	1 cut(s)	1510
BaeGI	GKGCMC	4 cut(s)	78, 108, 1237, 1616
BamHI	GGATCC	2 cut(s)	743, 1110
BanI	GGYRCC	3 cut(s)	22, 56, 856
BanII	GRGCYC	3 cut(s)	78, 108, 2515
BarI	GAAGNNNNNNTAC	4 cut(s)	1375, 1407, 1465, 1497
BauI	CACGAG	1 cut(s)	930
BbsI	GAAGAC	1 cut(s)	990
Bbv12I	GWGCWC	3 cut(s)	814, 1237, 2515
BbvI	GCAGC	7 cut(s)	412, 424, 575, 938, 1077, 1646, 2313
BceAI	ACGGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	4 cut(s)	768, 802, 2861, 2895
BciT130I	CCWGG	3 cut(s)	666, 984, 2331
BclI	TGATCA	1 cut(s)	1096
BcoDI	GTCTC	4 cut(s)	573, 1786, 1993, 2544
BcuI	ACTAGT	1 cut(s)	2579
BfmI	CTRYAG	1 cut(s)	1494
BfoI	RGCGCY	3 cut(s)	26, 60, 2612
BisI	GCNGC	9 cut(s)	12, 260, 426, 438, 564, 927, 1091, 1635, 2302
BlnI	CCTAGG	1 cut(s)	26
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	9 cut(s)	13, 261, 427, 439, 565, 928, 1092, 1636, 2303
BmcAI	AGTACT	1 cut(s)	1474
Bme1390I	CCNGG	3 cut(s)	666, 984, 2331
Bme18I	GGWCC	4 cut(s)	356, 842, 1372, 2957
BmeT110I	CYCGRG	2 cut(s)	1263, 2166
BmgT120I	GGNCC	8 cut(s)	74, 75, 104, 105, 356, 842, 1372, 2957
BmrFI	CCNGG	3 cut(s)	666, 984, 2331
BmrI	ACTGGG	2 cut(s)	2826, 3100
BmsI	GCATC	7 cut(s)	274, 1179, 1192, 1277, 1460, 1831, 2233
BmuI	ACTGGG	2 cut(s)	2826, 3100
BoxI	GACNNNNGTC	2 cut(s)	994, 2559
BpiI	GAAGAC	1 cut(s)	990
Bpu1102I	GCTNAGC	1 cut(s)	83
Bpu14I	TTCGAA	1 cut(s)	3081
BpuEI	CTTGAG	1 cut(s)	819
BsaBI	GATNNNNATC	3 cut(s)	1169, 1845, 2052
BsaHI	GRCGYC	2 cut(s)	23, 57
BsaI	GGTCTC	2 cut(s)	1786, 1993
BsaJI	CCNNGG	5 cut(s)	26, 162, 264, 490, 2557
BsaWI	WCCGGW	1 cut(s)	802
BsaXI	ACNNNNNCTCC	6 cut(s)	580, 610, 2203, 2233, 2410, 2440
Bsc4I	CCNNNNNNNGG	9 cut(s)	101, 102, 206, 971, 1328, 1721, 2135, 2330, 2522
Bse118I	RCCGGY	2 cut(s)	802, 1364
Bse21I	CCTNAGG	1 cut(s)	1510
Bse3DI	GCAATG	1 cut(s)	1309
Bse8I	GATNNNNATC	3 cut(s)	1169, 1845, 2052
BseBI	CCWGG	3 cut(s)	666, 984, 2331
BseDI	CCNNGG	5 cut(s)	26, 162, 264, 490, 2557
BseGI	GGATG	9 cut(s)	289, 412, 796, 1099, 1451, 1685, 1711, 1918, 1982
BseJI	GATNNNNATC	3 cut(s)	1169, 1845, 2052
BseLI	CCNNNNNNNGG	9 cut(s)	101, 102, 206, 971, 1328, 1721, 2135, 2330, 2522
BseMI	GCAATG	1 cut(s)	1309
BseMII	CTCAG	4 cut(s)	74, 1524, 2486, 2502
BseRI	GAGGAG	3 cut(s)	233, 561, 909
BseSI	GKGCMC	4 cut(s)	78, 108, 1237, 1616
BseXI	GCAGC	7 cut(s)	412, 424, 575, 938, 1077, 1646, 2313
BseYI	CCCAGC	2 cut(s)	78, 697
BsgI	GTGCAG	3 cut(s)	591, 743, 1264
Bsh1236I	CGCG	1 cut(s)	1421
Bsh1285I	CGRYCG	2 cut(s)	1419, 1449
BshFI	GGCC	5 cut(s)	11, 43, 76, 106, 949
BshNI	GGYRCC	3 cut(s)	22, 56, 856
BshTI	ACCGGT	1 cut(s)	802
BsiEI	CGRYCG	2 cut(s)	1419, 1449
BsiHKAI	GWGCWC	3 cut(s)	814, 1237, 2515
BsiHKCI	CYCGRG	2 cut(s)	1263, 2166
BsiSI	CCGG	3 cut(s)	200, 803, 1365
BslFI	GGGAC	7 cut(s)	134, 342, 1358, 1418, 1448, 1463, 1894
BslI	CCNNNNNNNGG	9 cut(s)	101, 102, 206, 971, 1328, 1721, 2135, 2330, 2522
BsmAI	GTCTC	4 cut(s)	573, 1786, 1993, 2544
BsmBI	CGTCTC	2 cut(s)	573, 2544
BsmFI	GGGAC	7 cut(s)	134, 342, 1358, 1418, 1448, 1463, 1894
BsnI	GGCC	5 cut(s)	11, 43, 76, 106, 949
Bso31I	GGTCTC	2 cut(s)	1786, 1993
BsoBI	CYCGRG	2 cut(s)	1263, 2166
Bsp119I	TTCGAA	1 cut(s)	3081
Bsp120I	GGGCCC	2 cut(s)	74, 104
Bsp1286I	GDGCHC	6 cut(s)	78, 108, 814, 1237, 1616, 2515
Bsp1720I	GCTNAGC	1 cut(s)	83
Bsp19I	CCATGG	2 cut(s)	162, 490
BspACI	CCGC	9 cut(s)	12, 63, 137, 180, 260, 374, 435, 891, 2942
BspANI	GGCC	5 cut(s)	11, 43, 76, 106, 949
BspCNI	CTCAG	4 cut(s)	75, 1523, 2485, 2501
BspFNI	CGCG	1 cut(s)	1421
BspHI	TCATGA	1 cut(s)	2923
BspT104I	TTCGAA	1 cut(s)	3081
BspT107I	GGYRCC	3 cut(s)	22, 56, 856
BspTNI	GGTCTC	2 cut(s)	1786, 1993
BsrDI	GCAATG	1 cut(s)	1309
BsrFI	RCCGGY	2 cut(s)	802, 1364
BssAI	RCCGGY	2 cut(s)	802, 1364
BssECI	CCNNGG	5 cut(s)	26, 162, 264, 490, 2557
BssNI	GRCGYC	2 cut(s)	23, 57
BssSI	CACGAG	1 cut(s)	930
BssT1I	CCWWGG	5 cut(s)	26, 162, 264, 490, 2557
Bst2BI	CACGAG	1 cut(s)	930
Bst2UI	CCWGG	3 cut(s)	666, 984, 2331
Bst6I	CTCTTC	4 cut(s)	32, 122, 676, 2756
BstACI	GRCGYC	2 cut(s)	23, 57
BstAPI	GCANNNNNTGC	1 cut(s)	1287
BstBI	TTCGAA	1 cut(s)	3081
BstC8I	GCNNGC	5 cut(s)	61, 150, 1366, 2642, 2944
BstDEI	CTNAG	9 cut(s)	83, 393, 1298, 1323, 1510, 2472, 2488, 2784, 2982
BstDSI	CCRYGG	2 cut(s)	162, 490
BstF5I	GGATG	9 cut(s)	289, 412, 796, 1099, 1451, 1685, 1711, 1918, 1982
BstFNI	CGCG	1 cut(s)	1421
BstH2I	RGCGCY	3 cut(s)	26, 60, 2612
BstHHI	GCGC	5 cut(s)	25, 59, 430, 2569, 2611
BstMAI	GTCTC	4 cut(s)	573, 1786, 1993, 2544
BstMCI	CGRYCG	2 cut(s)	1419, 1449
BstNI	CCWGG	3 cut(s)	666, 984, 2331
BstNSI	RCATGY	5 cut(s)	1209, 1233, 1571, 2747, 2876
BstPAI	GACNNNNGTC	2 cut(s)	994, 2559
BstSCI	CCNGG	3 cut(s)	664, 982, 2329
BstSFI	CTRYAG	1 cut(s)	1494
BstSLI	GKGCMC	4 cut(s)	78, 108, 1237, 1616
BstUI	CGCG	1 cut(s)	1421
BstV1I	GCAGC	7 cut(s)	412, 424, 575, 938, 1077, 1646, 2313
BstV2I	GAAGAC	1 cut(s)	990
BstX2I	RGATCY	6 cut(s)	4, 743, 752, 1110, 1534, 2159
BstYI	RGATCY	6 cut(s)	4, 743, 752, 1110, 1534, 2159
Bsu36I	CCTNAGG	1 cut(s)	1510
BsuRI	GGCC	5 cut(s)	11, 43, 76, 106, 949
BtgI	CCRYGG	2 cut(s)	162, 490
BtsCI	GGATG	9 cut(s)	289, 412, 796, 1099, 1451, 1685, 1711, 1918, 1982
BtsI	GCAGTG	3 cut(s)	664, 1276, 1699
BtsIMutI	CAGTG	7 cut(s)	664, 918, 1047, 1276, 1699, 2605, 2995
Cac8I	GCNNGC	5 cut(s)	61, 150, 1366, 2642, 2944
CciI	TCATGA	1 cut(s)	2923
CfoI	GCGC	5 cut(s)	25, 59, 430, 2569, 2611
Cfr10I	RCCGGY	2 cut(s)	802, 1364
Cfr13I	GGNCC	8 cut(s)	74, 75, 104, 105, 356, 842, 1372, 2957
CseI	GACGC	2 cut(s)	555, 1410
Csp6I	GTAC	7 cut(s)	773, 1383, 1413, 1443, 1473, 2115, 2911
CspAI	ACCGGT	1 cut(s)	802
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviQI	GTAC	7 cut(s)	773, 1383, 1413, 1443, 1473, 2115, 2911
DdeI	CTNAG	9 cut(s)	83, 393, 1298, 1323, 1510, 2472, 2488, 2784, 2982
DinI	GGCGCC	2 cut(s)	24, 58
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	4 cut(s)	32, 122, 676, 2756
EarI	CTCTTC	4 cut(s)	32, 122, 676, 2756
EciI	GGCGGA	2 cut(s)	152, 195
Ecl136II	GAGCTC	1 cut(s)	2513
Eco130I	CCWWGG	5 cut(s)	26, 162, 264, 490, 2557
Eco24I	GRGCYC	3 cut(s)	78, 108, 2515
Eco31I	GGTCTC	2 cut(s)	1786, 1993
Eco32I	GATATC	1 cut(s)	1220
Eco47I	GGWCC	4 cut(s)	356, 842, 1372, 2957
Eco53kI	GAGCTC	1 cut(s)	2513
Eco57I	CTGAAG	3 cut(s)	1014, 1896, 2774
Eco81I	CCTNAGG	1 cut(s)	1510
Eco88I	CYCGRG	2 cut(s)	1263, 2166
EcoICRI	GAGCTC	1 cut(s)	2513
EcoO109I	RGGNCCY	4 cut(s)	74, 75, 104, 356
EcoRI	GAATTC	2 cut(s)	940, 1257
EcoRII	CCWGG	3 cut(s)	664, 982, 2329
EcoRV	GATATC	1 cut(s)	1220
EcoT14I	CCWWGG	5 cut(s)	26, 162, 264, 490, 2557
EcoT22I	ATGCAT	2 cut(s)	766, 1207
EcoT38I	GRGCYC	3 cut(s)	78, 108, 2515
EgeI	GGCGCC	2 cut(s)	24, 58
EheI	GGCGCC	2 cut(s)	24, 58
ErhI	CCWWGG	5 cut(s)	26, 162, 264, 490, 2557
Esp3I	CGTCTC	2 cut(s)	573, 2544
FalI	AAGNNNNNCTT	2 cut(s)	998, 1030
FaqI	GGGAC	7 cut(s)	134, 342, 1358, 1418, 1448, 1463, 1894
FauI	CCCGC	1 cut(s)	2935
FauNDI	CATATG	1 cut(s)	2728
FbaI	TGATCA	1 cut(s)	1096
FblI	GTMKAC	2 cut(s)	158, 824
Fnu4HI	GCNGC	9 cut(s)	12, 260, 426, 438, 564, 927, 1091, 1635, 2302
FokI	GGATG	9 cut(s)	296, 419, 783, 1086, 1438, 1672, 1718, 1925, 1969
FriOI	GRGCYC	3 cut(s)	78, 108, 2515
Fsp4HI	GCNGC	9 cut(s)	12, 260, 426, 438, 564, 927, 1091, 1635, 2302
FspI	TGCGCA	2 cut(s)	429, 2568
GlaI	GCGC	5 cut(s)	24, 58, 429, 2568, 2610
GluI	GCNGC	9 cut(s)	12, 260, 426, 438, 564, 927, 1091, 1635, 2302
GsaI	CCCAGC	2 cut(s)	82, 701
HaeII	RGCGCY	3 cut(s)	26, 60, 2612
HaeIII	GGCC	5 cut(s)	11, 43, 76, 106, 949
HapII	CCGG	3 cut(s)	200, 803, 1365
HgaI	GACGC	2 cut(s)	555, 1410
HhaI	GCGC	5 cut(s)	25, 59, 430, 2569, 2611
Hin1I	GRCGYC	2 cut(s)	23, 57
Hin6I	GCGC	5 cut(s)	23, 57, 428, 2567, 2609
HinP1I	GCGC	5 cut(s)	23, 57, 428, 2567, 2609
HincII	GTYRAC	3 cut(s)	159, 366, 2839
HindII	GTYRAC	3 cut(s)	159, 366, 2839
HindIII	AAGCTT	3 cut(s)	466, 1023, 2786
HpaI	GTTAAC	1 cut(s)	2839
HpaII	CCGG	3 cut(s)	200, 803, 1365
HphI	GGTGA	6 cut(s)	725, 1233, 1280, 1958, 2016, 2675
Hpy166II	GTNNAC	8 cut(s)	159, 366, 825, 842, 989, 1235, 2839, 2911
Hpy8I	GTNNAC	8 cut(s)	159, 366, 825, 842, 989, 1235, 2839, 2911
Hpy99I	CGWCG	2 cut(s)	196, 1786
HpyCH4IV	ACGT	1 cut(s)	1781
HpyF3I	CTNAG	9 cut(s)	83, 393, 1298, 1323, 1510, 2472, 2488, 2784, 2982
HpySE526I	ACGT	1 cut(s)	1781
Hsp92I	GRCGYC	2 cut(s)	23, 57
HspAI	GCGC	5 cut(s)	23, 57, 428, 2567, 2609
KasI	GGCGCC	2 cut(s)	22, 56
KflI	GGGWCCC	1 cut(s)	356
KroI	GCCGGC	1 cut(s)	1364
KroNI	GCCGGC	1 cut(s)	1366
Ksp22I	TGATCA	1 cut(s)	1096
KspAI	GTTAAC	1 cut(s)	2839
LmnI	GCTCC	7 cut(s)	196, 241, 817, 1526, 2510, 2518, 3009
Lsp1109I	GCAGC	7 cut(s)	412, 424, 575, 938, 1077, 1646, 2313
LweI	GCATC	7 cut(s)	274, 1179, 1192, 1277, 1460, 1831, 2233
MaeII	ACGT	1 cut(s)	1781
MaeIII	GTNAC	5 cut(s)	592, 913, 1293, 2722, 2858
MflI	RGATCY	6 cut(s)	4, 743, 752, 1110, 1534, 2159
MhlI	GDGCHC	6 cut(s)	78, 108, 814, 1237, 1616, 2515
Mly113I	GGCGCC	2 cut(s)	23, 57
MlyI	GAGTC	1 cut(s)	910
MmeI	TCCRAC	3 cut(s)	839, 1764, 2259
Mph1103I	ATGCAT	2 cut(s)	766, 1207
MroNI	GCCGGC	1 cut(s)	1364
MroXI	GAANNNNTTC	3 cut(s)	685, 2093, 2970
MseI	TTAA	9 cut(s)	318, 458, 728, 1358, 1626, 1736, 2066, 2838, 2948
MspA1I	CMGCKG	6 cut(s)	63, 82, 437, 482, 893, 1090
MspI	CCGG	3 cut(s)	200, 803, 1365
MspR9I	CCNGG	3 cut(s)	666, 984, 2331
MvaI	CCWGG	3 cut(s)	666, 984, 2331
MvnI	CGCG	1 cut(s)	1421
NaeI	GCCGGC	1 cut(s)	1366
NarI	GGCGCC	2 cut(s)	23, 57
NcoI	CCATGG	2 cut(s)	162, 490
NdeI	CATATG	1 cut(s)	2728
NgoMIV	GCCGGC	1 cut(s)	1364
NmuCI	GTSAC	3 cut(s)	913, 1293, 2858
NsbI	TGCGCA	2 cut(s)	429, 2568
NsiI	ATGCAT	2 cut(s)	766, 1207
NspI	RCATGY	5 cut(s)	1209, 1233, 1571, 2747, 2876
NspV	TTCGAA	1 cut(s)	3081
PaeR7I	CTCGAG	2 cut(s)	1263, 2166
PagI	TCATGA	1 cut(s)	2923
PciI	ACATGT	2 cut(s)	1229, 1567
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PdiI	GCCGGC	1 cut(s)	1366
PdmI	GAANNNNTTC	3 cut(s)	685, 2093, 2970
PflMI	CCANNNNNTGG	2 cut(s)	971, 2522
PfoI	TCCNGGA	1 cut(s)	2329
PinAI	ACCGGT	1 cut(s)	802
PkrI	GCNGC	9 cut(s)	13, 261, 427, 439, 565, 928, 1092, 1636, 2303
PleI	GAGTC	1 cut(s)	910
PluTI	GGCGCC	2 cut(s)	26, 60
PpsI	GAGTC	1 cut(s)	910
PpuMI	RGGWCCY	1 cut(s)	356
PscI	ACATGT	2 cut(s)	1229, 1567
PshAI	GACNNNNGTC	2 cut(s)	994, 2559
Psp124BI	GAGCTC	1 cut(s)	2515
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	3 cut(s)	664, 982, 2329
PspFI	CCCAGC	2 cut(s)	78, 697
PspGI	CCWGG	3 cut(s)	664, 982, 2329
PspOMI	GGGCCC	2 cut(s)	74, 104
PspPI	GGNCC	8 cut(s)	74, 75, 104, 105, 356, 842, 1372, 2957
PspPPI	RGGWCCY	1 cut(s)	356
PspXI	VCTCGAGB	1 cut(s)	1263
PsrI	GAACNNNNNNTAC	2 cut(s)	1173, 1205
PsuI	RGATCY	6 cut(s)	4, 743, 752, 1110, 1534, 2159
PvuII	CAGCTG	3 cut(s)	82, 482, 1090
RsaI	GTAC	7 cut(s)	774, 1384, 1414, 1444, 1474, 2116, 2912
RsaNI	GTAC	7 cut(s)	773, 1383, 1413, 1443, 1473, 2115, 2911
SacI	GAGCTC	1 cut(s)	2515
SalI	GTCGAC	1 cut(s)	157
SaqAI	TTAA	9 cut(s)	318, 458, 728, 1358, 1626, 1736, 2066, 2838, 2948
SatI	GCNGC	9 cut(s)	12, 260, 426, 438, 564, 927, 1091, 1635, 2302
Sau96I	GGNCC	8 cut(s)	74, 75, 104, 105, 356, 842, 1372, 2957
ScaI	AGTACT	1 cut(s)	1474
SchI	GAGTC	1 cut(s)	910
ScrFI	CCNGG	3 cut(s)	666, 984, 2331
SduI	GDGCHC	6 cut(s)	78, 108, 814, 1237, 1616, 2515
SfaNI	GCATC	7 cut(s)	274, 1179, 1192, 1277, 1460, 1831, 2233
SfcI	CTRYAG	1 cut(s)	1494
SfoI	GGCGCC	2 cut(s)	24, 58
Sfr274I	CTCGAG	2 cut(s)	1263, 2166
SfuI	TTCGAA	1 cut(s)	3081
SinI	GGWCC	4 cut(s)	356, 842, 1372, 2957
SlaI	CTCGAG	2 cut(s)	1263, 2166
SmlI	CTYRAG	3 cut(s)	834, 1263, 2166
SmoI	CTYRAG	3 cut(s)	834, 1263, 2166
SpeI	ACTAGT	1 cut(s)	2579
SsiI	CCGC	9 cut(s)	12, 63, 137, 180, 260, 374, 435, 891, 2942
SspDI	GGCGCC	2 cut(s)	22, 56
SspI	AATATT	2 cut(s)	1624, 2062
SstI	GAGCTC	1 cut(s)	2515
StyD4I	CCNGG	3 cut(s)	664, 982, 2329
StyI	CCWWGG	5 cut(s)	26, 162, 264, 490, 2557
TaiI	ACGT	1 cut(s)	1784
TaqI	TCGA	7 cut(s)	158, 175, 1264, 1895, 2167, 2503, 3081
TatI	WGTACW	4 cut(s)	772, 1382, 1472, 2114
TauI	GCSGC	2 cut(s)	14, 262
Tru1I	TTAA	9 cut(s)	318, 458, 728, 1358, 1626, 1736, 2066, 2838, 2948
Tru9I	TTAA	9 cut(s)	318, 458, 728, 1358, 1626, 1736, 2066, 2838, 2948
TscAI	CASTG	7 cut(s)	664, 918, 1054, 1283, 1699, 2605, 2995
TseFI	GTSAC	3 cut(s)	913, 1293, 2858
TseI	GCWGC	7 cut(s)	425, 437, 563, 926, 1090, 1634, 2301
Tsp45I	GTSAC	3 cut(s)	913, 1293, 2858
TspGWI	ACGGA	4 cut(s)	209, 1718, 1925, 3022
TspRI	CASTG	7 cut(s)	664, 918, 1054, 1283, 1699, 2605, 2995
Van91I	CCANNNNNTGG	2 cut(s)	971, 2522
VneI	GTGCAC	1 cut(s)	1233
VpaK11BI	GGWCC	4 cut(s)	356, 842, 1372, 2957
XapI	RAATTY	7 cut(s)	171, 781, 940, 1257, 1920, 2256, 2530
XbaI	TCTAGA	1 cut(s)	2192
XceI	RCATGY	5 cut(s)	1209, 1233, 1571, 2747, 2876
XcmI	CCANNNNNNNNNTGG	3 cut(s)	67, 271, 2762
XhoI	CTCGAG	2 cut(s)	1263, 2166
XmaJI	CCTAGG	1 cut(s)	26
XmiI	GTMKAC	2 cut(s)	158, 824
XmnI	GAANNNNTTC	3 cut(s)	685, 2093, 2970
ZrmI	AGTACT	1 cut(s)	1474
Zsp2I	ATGCAT	2 cut(s)	766, 1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.