Rorug05G0193900

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004984
Physical Location & Seq
Forward (+)
19059534 .. 19064739
5206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0193900.1

Sequence Viewer

Length: 1107 bp
ATGGGGGAGATAACCAACGTCAGTGAGTATGAGGCAATTGCAAAGCAGAAATTGCCAAAGATGGTGTATGACTATTATGCATCAGGAGCAGAGGACCAGTGGACTCTGGCTGAAAACAGAAATGCTTTCTCCAAGATTCTGTTTCGACCCCGTATTCTTATTGATGTAAGCAACATCGACATGACCACTACCGTTTTAGGCTTCAAAATTTCCATGCCAATCATGATTGCCCCAACAGCCATGCAGAAAATGGCTCATCCTGAAGGTGAATATGCTACTGCACGAGCAGCATCAGCAGCGGGAACGATTATGACTTTATCATCATGGGCTACTTCAAGTGTTGAAGAGGTCGCTTCAACTGGACCTGGAATCCGTTTTTTCCAGCTCTATGTATACAAGGATAGGCATGTAGTTGCTCAACTAGTGAGAAGAGCTGAAAGGGCTGGGTTCAAGGCTATTGCTCTTACAGTTGATACTCCAAGGCTGGGTCGCAGAGAAGCTGACATCAAGAACAGATTTACTTTACCTCCATTTCTGACACTGAAGAACTTTGAAGGTTTGGAACTTGGAAAGATGGACAAAGCTAATGACTCCGGACTTGCTTCATACGTTGCTGGTCAAATTGATCGTTCTCTTAGCTGGAAGGATGTAAAGTGGCTTCAGACAATCACCAAACTTCCTATTCTGGTCAAGGGTGTTCTCACTGCTGAAGATGCAAGGCTTGCTGTACAATCTGGAGCAGCTGGGATCATTGTATCCAATCATGGTGCTCGACAACTTGACTATGTCCCTTCAACTATCATGGCCTTAGAAGAGGTTGTTAAAGCTGCGCAAGGACGTGTTCCTGTTTTCTTGGATGGTGGTGTTCGTCGTGGAACAGATGTCTTTAAAGCATTAGCGTTGGGTGCCTCTGGAATATTTTTTGGACGCCCTGTACTGTACTCTTTGGCTGCTGAAGGAGAGGCTGGCGTTAGAAAAGTACTCCAAATGTTGCGTGAGGAGTTTGAGCTAACCATGGCATTAAGTGGATGCCGTTCACTCAAAGAAATCACCCGCAATCACATTGTGACTGAGTGGGACGCTCCTCGCCCAGTACCCAGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

368

Amino Acids

40.46

Weight (kDa)

9.33

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 14 - 356 6.9e-140 FMN-dependent dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 831
AccB1I GGYRCC 1 cut(s) 905
AccI GTMKAC 1 cut(s) 393
AccIII TCCGGA 1 cut(s) 593
AciI CCGC 2 cut(s) 299, 1054
AclWI GGATC 1 cut(s) 755
AcsI RAATTY 1 cut(s) 207
AcuI CTGAAG 5 cut(s) 282, 563, 644, 729, 975
AcyI GRCGYC 1 cut(s) 928
AdeI CACNNNGTG 1 cut(s) 1066
AfaI GTAC 5 cut(s) 729, 936, 941, 981, 1095
AfiI CCNNNNNNNGG 1 cut(s) 485
AflIII ACRYGT 1 cut(s) 838
AgsI TTSAA 7 cut(s) 205, 336, 344, 357, 451, 554, 795
AhlI ACTAGT 1 cut(s) 421
AjiI CACGTC 1 cut(s) 839
AjnI CCWGG 2 cut(s) 364, 1097
AluBI AGCT 8 cut(s) 385, 434, 500, 584, 639, 743, 827, 1009
AluI AGCT 8 cut(s) 385, 434, 500, 584, 639, 743, 827, 1009
Alw21I GWGCWC 1 cut(s) 772
AlwI GGATC 1 cut(s) 755
Aor13HI TCCGGA 1 cut(s) 593
AoxI GGCC 1 cut(s) 804
ApeKI GCWGC 5 cut(s) 287, 296, 740, 827, 950
ApoI RAATTY 1 cut(s) 207
AspLEI GCGC 1 cut(s) 832
AspS9I GGNCC 2 cut(s) 94, 362
AsuHPI GGTGA 3 cut(s) 278, 661, 1042
AvaII GGWCC 2 cut(s) 94, 362
BanI GGYRCC 1 cut(s) 905
BarI GAAGNNNNNNTAC 2 cut(s) 642, 674
BauI CACGAG 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 772
BbvI GCAGC 5 cut(s) 299, 308, 752, 814, 937
BccI CCATC 3 cut(s) 55, 568, 851
BceAI ACGGC 1 cut(s) 1017
BciT130I CCWGG 2 cut(s) 366, 1099
BciVI GTATCC 1 cut(s) 766
BcuI ACTAGT 1 cut(s) 421
BfaI CTAG 1 cut(s) 422
BfuI GTATCC 1 cut(s) 766
BisI GCNGC 5 cut(s) 288, 297, 741, 828, 951
BlsI GCNGC 5 cut(s) 289, 298, 742, 829, 952
BmcAI AGTACT 1 cut(s) 981
Bme1390I CCNGG 2 cut(s) 366, 1099
Bme18I GGWCC 2 cut(s) 94, 362
BmgBI CACGTC 1 cut(s) 839
BmgT120I GGNCC 2 cut(s) 94, 362
BmiI GGNNCC 1 cut(s) 907
BmrFI CCNGG 2 cut(s) 366, 1099
BmrI ACTGGG 1 cut(s) 1085
BmsI GCATC 4 cut(s) 89, 299, 703, 1019
BmuI ACTGGG 1 cut(s) 1085
BpmI CTGGAG 1 cut(s) 756
BsaHI GRCGYC 1 cut(s) 928
BsaJI CCNNGG 3 cut(s) 479, 1014, 1097
BsaWI WCCGGW 1 cut(s) 593
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse1I ACTGG 3 cut(s) 97, 364, 1091
BseAI TCCGGA 1 cut(s) 593
BseBI CCWGG 2 cut(s) 366, 1099
BseDI CCNNGG 3 cut(s) 479, 1014, 1097
BseGI GGATG 4 cut(s) 256, 652, 862, 1034
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMII CTCAG 1 cut(s) 1062
BseNI ACTGG 3 cut(s) 97, 364, 1091
BseRI GAGGAG 2 cut(s) 1013, 1074
BseXI GCAGC 5 cut(s) 299, 308, 752, 814, 937
BseYI CCCAGC 3 cut(s) 443, 484, 743
BsgI GTGCAG 1 cut(s) 264
BshFI GGCC 1 cut(s) 806
BshNI GGYRCC 1 cut(s) 905
BsiHKAI GWGCWC 1 cut(s) 772
BsiSI CCGG 1 cut(s) 594
BslFI GGGAC 2 cut(s) 773, 1091
BslI CCNNNNNNNGG 1 cut(s) 485
BsmFI GGGAC 2 cut(s) 773, 1091
BsnI GGCC 1 cut(s) 806
Bsp1286I GDGCHC 1 cut(s) 772
Bsp13I TCCGGA 1 cut(s) 593
Bsp1407I TGTACA 1 cut(s) 727
Bsp143I GATC 2 cut(s) 625, 747
Bsp19I CCATGG 1 cut(s) 1014
BspACI CCGC 2 cut(s) 299, 1054
BspANI GGCC 1 cut(s) 806
BspCNI CTCAG 1 cut(s) 1063
BspEI TCCGGA 1 cut(s) 593
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 907
BspPI GGATC 1 cut(s) 755
BspQI GCTCTTC 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 905
BsrGI TGTACA 1 cut(s) 727
BsrI ACTGG 3 cut(s) 97, 364, 1091
BssECI CCNNGG 3 cut(s) 479, 1014, 1097
BssMI GATC 2 cut(s) 625, 747
BssNAI GTATAC 1 cut(s) 394
BssNI GRCGYC 1 cut(s) 928
BssSI CACGAG 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 479, 1014
Bst1107I GTATAC 1 cut(s) 394
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 366, 1099
Bst4CI ACNGT 3 cut(s) 193, 469, 939
Bst6I CTCTTC 3 cut(s) 339, 424, 807
BstACI GRCGYC 1 cut(s) 928
BstAPI GCANNNNNTGC 2 cut(s) 52, 722
BstAUI TGTACA 1 cut(s) 727
BstC8I GCNNGC 2 cut(s) 723, 967
BstDEI CTNAG 3 cut(s) 635, 808, 1071
BstDSI CCRYGG 1 cut(s) 1014
BstF5I GGATG 4 cut(s) 256, 652, 862, 1034
BstHHI GCGC 1 cut(s) 832
BstKTI GATC 2 cut(s) 628, 750
BstMBI GATC 2 cut(s) 625, 747
BstNI CCWGG 2 cut(s) 366, 1099
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 2 cut(s) 364, 1097
BstV1I GCAGC 5 cut(s) 299, 308, 752, 814, 937
BstZ17I GTATAC 1 cut(s) 394
BsuI GTATCC 1 cut(s) 766
BsuRI GGCC 1 cut(s) 806
BtgI CCRYGG 1 cut(s) 1014
BtrI CACGTC 1 cut(s) 839
BtsCI GGATG 4 cut(s) 256, 652, 862, 1034
BtsI GCAGTG 1 cut(s) 702
BtsIMutI CAGTG 4 cut(s) 28, 104, 539, 702
Cac8I GCNNGC 2 cut(s) 723, 967
CciI TCATGA 1 cut(s) 222
CfoI GCGC 1 cut(s) 832
Cfr13I GGNCC 2 cut(s) 94, 362
CseI GACGC 2 cut(s) 936, 1088
Csp6I GTAC 5 cut(s) 728, 935, 940, 980, 1094
CviAII CATG 9 cut(s) 181, 214, 223, 241, 324, 407, 764, 802, 1015
CviQI GTAC 5 cut(s) 728, 935, 940, 980, 1094
DdeI CTNAG 3 cut(s) 635, 808, 1071
DpnI GATC 2 cut(s) 627, 749
DpnII GATC 2 cut(s) 625, 747
DraI TTTAAA 1 cut(s) 889
DraIII CACNNNGTG 1 cut(s) 1066
Eam1104I CTCTTC 3 cut(s) 339, 424, 807
EarI CTCTTC 3 cut(s) 339, 424, 807
Eco130I CCWWGG 2 cut(s) 479, 1014
Eco47I GGWCC 2 cut(s) 94, 362
Eco57I CTGAAG 5 cut(s) 282, 563, 644, 729, 975
EcoRII CCWGG 2 cut(s) 364, 1097
EcoT14I CCWWGG 2 cut(s) 479, 1014
EcoT22I ATGCAT 1 cut(s) 82
ErhI CCWWGG 2 cut(s) 479, 1014
FaeI CATG 9 cut(s) 184, 217, 226, 244, 327, 410, 767, 805, 1018
FaqI GGGAC 2 cut(s) 773, 1091
FatI CATG 9 cut(s) 180, 213, 222, 240, 323, 406, 763, 801, 1014
FauI CCCGC 2 cut(s) 292, 1061
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 5 cut(s) 288, 297, 741, 828, 951
FokI GGATG 4 cut(s) 243, 659, 869, 1041
Fsp4HI GCNGC 5 cut(s) 288, 297, 741, 828, 951
FspBI CTAG 1 cut(s) 422
FspI TGCGCA 1 cut(s) 831
GlaI GCGC 1 cut(s) 831
GluI GCNGC 5 cut(s) 288, 297, 741, 828, 951
GsaI CCCAGC 3 cut(s) 447, 488, 747
GsuI CTGGAG 1 cut(s) 756
HaeIII GGCC 1 cut(s) 806
HapII CCGG 1 cut(s) 594
HgaI GACGC 2 cut(s) 936, 1088
HhaI GCGC 1 cut(s) 832
Hin1I GRCGYC 1 cut(s) 928
Hin1II CATG 9 cut(s) 184, 217, 226, 244, 327, 410, 767, 805, 1018
Hin6I GCGC 1 cut(s) 830
HinP1I GCGC 1 cut(s) 830
HinfI GANTC 4 cut(s) 103, 136, 369, 590
HpaII CCGG 1 cut(s) 594
HphI GGTGA 3 cut(s) 278, 661, 1042
Hpy166II GTNNAC 3 cut(s) 102, 394, 1037
Hpy188I TCNGA 2 cut(s) 537, 663
Hpy188III TCNNGA 7 cut(s) 84, 223, 260, 508, 594, 735, 912
Hpy8I GTNNAC 3 cut(s) 102, 394, 1037
Hpy99I CGWCG 1 cut(s) 873
HpyAV CCTTC 5 cut(s) 257, 548, 637, 801, 950
HpyCH4III ACNGT 3 cut(s) 193, 469, 939
HpyCH4IV ACGT 3 cut(s) 18, 609, 838
HpyCH4V TGCA 5 cut(s) 41, 80, 244, 281, 716
HpyF3I CTNAG 3 cut(s) 635, 808, 1071
HpySE526I ACGT 3 cut(s) 18, 609, 838
Hsp92I GRCGYC 1 cut(s) 928
Hsp92II CATG 9 cut(s) 184, 217, 226, 244, 327, 410, 767, 805, 1018
HspAI GCGC 1 cut(s) 830
Kpn2I TCCGGA 1 cut(s) 593
Kzo9I GATC 2 cut(s) 625, 747
LguI GCTCTTC 1 cut(s) 424
LmnI GCTCC 3 cut(s) 86, 737, 1087
Lsp1109I GCAGC 5 cut(s) 299, 308, 752, 814, 937
LweI GCATC 4 cut(s) 89, 299, 703, 1019
MaeI CTAG 1 cut(s) 422
MaeII ACGT 3 cut(s) 18, 609, 838
MaeIII GTNAC 1 cut(s) 1066
MalI GATC 2 cut(s) 627, 749
MboI GATC 2 cut(s) 625, 747
MboII GAAGA 5 cut(s) 356, 441, 556, 722, 824
MfeI CAATTG 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 772
MluCI AATT 4 cut(s) 36, 50, 207, 621
MlyI GAGTC 2 cut(s) 97, 584
MnlI CCTC 9 cut(s) 25, 85, 340, 537, 808, 919, 955, 991, 1095
Mph1103I ATGCAT 1 cut(s) 82
MroI TCCGGA 1 cut(s) 593
MseI TTAA 3 cut(s) 822, 888, 1022
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 2 cut(s) 299, 743
MspI CCGG 1 cut(s) 594
MspR9I CCNGG 2 cut(s) 366, 1099
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 2 cut(s) 366, 1099
NcoI CCATGG 1 cut(s) 1014
NdeII GATC 2 cut(s) 625, 747
NlaIII CATG 9 cut(s) 184, 217, 226, 244, 327, 410, 767, 805, 1018
NlaIV GGNNCC 1 cut(s) 907
NmuCI GTSAC 1 cut(s) 1066
NsbI TGCGCA 1 cut(s) 831
NsiI ATGCAT 1 cut(s) 82
NspI RCATGY 1 cut(s) 410
PagI TCATGA 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 424
PfeI GAWTC 2 cut(s) 136, 369
PflFI GACNNNGTC 1 cut(s) 785
PkrI GCNGC 5 cut(s) 289, 298, 742, 829, 952
PleI GAGTC 2 cut(s) 97, 584
PpsI GAGTC 2 cut(s) 97, 584
Psp6I CCWGG 2 cut(s) 364, 1097
PspFI CCCAGC 3 cut(s) 443, 484, 743
PspGI CCWGG 2 cut(s) 364, 1097
PspN4I GGNNCC 1 cut(s) 907
PspPI GGNCC 2 cut(s) 94, 362
PsyI GACNNNGTC 1 cut(s) 785
PvuII CAGCTG 1 cut(s) 743
RsaI GTAC 5 cut(s) 729, 936, 941, 981, 1095
RsaNI GTAC 5 cut(s) 728, 935, 940, 980, 1094
RseI CAYNNNNRTG 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 424
SaqAI TTAA 3 cut(s) 822, 888, 1022
SatI GCNGC 5 cut(s) 288, 297, 741, 828, 951
Sau3AI GATC 2 cut(s) 625, 747
Sau96I GGNCC 2 cut(s) 94, 362
ScaI AGTACT 1 cut(s) 981
SchI GAGTC 2 cut(s) 97, 584
ScrFI CCNGG 2 cut(s) 366, 1099
SduI GDGCHC 1 cut(s) 772
SfaNI GCATC 4 cut(s) 89, 299, 703, 1019
SinI GGWCC 2 cut(s) 94, 362
SmiMI CAYNNNNRTG 1 cut(s) 179
SpeI ACTAGT 1 cut(s) 421
Sse9I AATT 4 cut(s) 36, 50, 207, 621
SsiI CCGC 2 cut(s) 299, 1054
SspI AATATT 1 cut(s) 918
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 2 cut(s) 364, 1097
StyI CCWWGG 2 cut(s) 479, 1014
TaaI ACNGT 3 cut(s) 193, 469, 939
TaiI ACGT 3 cut(s) 21, 612, 841
TaqI TCGA 3 cut(s) 145, 177, 772
TasI AATT 4 cut(s) 36, 50, 207, 621
TatI WGTACW 4 cut(s) 727, 934, 939, 979
TfiI GAWTC 2 cut(s) 136, 369
Tru1I TTAA 3 cut(s) 822, 888, 1022
Tru9I TTAA 3 cut(s) 822, 888, 1022
TscAI CASTG 4 cut(s) 28, 104, 546, 709
TseFI GTSAC 1 cut(s) 1066
TseI GCWGC 5 cut(s) 287, 296, 740, 827, 950
Tsp45I GTSAC 1 cut(s) 1066
TspDTI ATGAA 1 cut(s) 594
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 4 cut(s) 28, 104, 546, 709
Tth111I GACNNNGTC 1 cut(s) 785
VpaK11BI GGWCC 2 cut(s) 94, 362
XapI RAATTY 1 cut(s) 207
XceI RCATGY 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 1 cut(s) 422
ZrmI AGTACT 1 cut(s) 981
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.