Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004984

Physical Location & Seq

Genomic Coordinates Reverse (-)

37016860 .. 37022650

Gene Structure 5791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG293600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

ATGGATCTGGCCGCAGACGAGCCGCCTAGGGTTGAGAAGAGGCCGATTCAGAACGGCGCCGGCGGAGAATTGGGGCCCCAGCTGAGCAAGAAGCCCAGATTGGGGCCCGATTGCGAGAGGGACTTGAAGAGAGTGGCGGAGATTGTGCTGGCTTTGTCGACCATGGCGAAAATTCGAGGCGGAGAGAAGCCGACGGAGCCGGAGATTGGGCTTATGGAGGAGGCTAGGGCAAAGCTGGTGGAGCTGTGCGAGGGTTTGCCGCCCAAGGAGATTGTGGCGAAGGATGCGATTTCGGCTGTGATTGAGGATTTGGGGCTTAATGCCAAGCTCAATGAACAGAGATTAGGGTTTCGGGGTCCCAAGTTGACGATTGCGGAGAAGTTTGCACTCACTAAGAGGAAGATGGATGAATCCAAGAAATACGCTGCGCAAACCGCTGCATATCCATCTCAACCATTAAAAACAAGCTTCAATGTAGCAGCTGAAAACCATGGGTTGCCACATACTGTTCGTATTTCAACAGATAACCCAAACCATGCACCTATTTCAACTGGTGGTTTCGCAGCGTCTCCTCTTGTTCATGTTTCCACAGTAACTCCTACATCTGCACAGTATCAGTTGCCCACCAGCGAAATTAGAACAACTATGGTTTCTGGCAGTGTGCCTGGTAGTCATCTGGGAAGAGATTCATCTTCCCCAGCATTTCCTAGAGGTGAAAGAGTGCAATTAAGAACTGATGGAGGATCCAATGGATCTTCTTATGCATATCAAGTACAAGCAAATTCTTCGGCAAATCATCCACCGGTTAGTGCTCCAACTTGGCCTACACAAACTCAAGGTGGACCAGAAAACAAGGTGCCAAATCATACTTCTGTCAAGGTTGAAGGAACCACTGGTATGAGTAAACCATCAGTGACTCCTCTAGCAGCACGAGATCAGAATTCTAGGTCATTTGCCTCTCAACCATCTTCTGGACATTTGCCTGGTGGACACCAGTCTTCACAAAAGATTCGCTTTGTTCAAGCTTCTTCAGTTCCTAATAATCACACTGAAATTGCGAGAATTATTCAGAAATTATTGCAACCACAGCTGCCTGATCATCCCACATGGATCCCTCCATCAAGGGATTATATGAGTAAGGCTTTGACTTGCCAAACTTGCCAGATTAGCATCAATGAGGTAGATAATGTTCTTATTTGTGATGCATGTGAGAAAGGATATCACATTACGTGTGCACAATCACCTAACCAGAGAGGAATTCCTCGAGGTGAATGGCACTGCACAAGATGCTTGTCACTAAGCAATGGAAAGCCTTTGCCTCCTAAGTATGGGCGTGTTATGAGAAGCAATATACAATTAAAAGCCGGCACGATCCCTTCCAGTACAGTCGCTTCCAGCACAGTCCCCTCCAGCACAGTCCCTTCCAGTACGATCGCTTCCAGCACAGCCCCTTCCAGTACTGTCCCTTCCAGCATGGCTGTAGTTCAGATGTCCTCAGGGAATAAAGTGGGAGCTTTAGATCCAAAGGTCTATGAGCAGAAGATAAATGCACATGTAAGCTCTGTTTTCCAGAATCCTGCTCATTTGGTTGGTGTGGGCACAAACAATATTAAGTCGGCAACAGATTCAAAAGTTTCATTTGCAATGCAAGGGAATAATTTACCATCCAGCAGTGTAAATGCGGATGAGAAACCTCTTTCTGGAAGTTTCCTGTTAAGTGAAACATCATCTCAACAAATAGGTAATTCTGAATTATCTACATCGGACAAGAGACCTATGGAATCAAGAGCAGAACCTTCTTCTGATTTGTCAAACAAAGATGCTGATCCCAAGATTTCAACTGCAAGTGAAACTGAAGGGACTAATTTTCCATCAAGCAGTAAAACTACGGATGAGAAAATTCTTTCTGGAAGTTTCCAGTCTGGTGAAAGGACATCTCAACAGAGAGATATTTCTGAATCATTCAAATCTGACAAGAGACCTTCTGAATCAAGAGCAGAATCACCTACTGATTTACCCAACAAAGATTCTGATCCAAATATTTTAAGTGCAACAGAAACACAAGGGAATAATTTCCCATCAAGCAGTCAAAGTACAGATGAGAAACCTGTTTCTGGAAGTTTCATGTCTAGTGAAAGATCCTCTCGAGAAATAGATAATTCTGAATCATCTAGACTATTTGAATCAAGCACAGAGCCTCCTGCTGATTTATCCAACAAAGATGCTGATTCAAAAATTTCAAATGCAAGAGAAATGCAAGGTAATAATTTCTCAACAAGCAGCAAGGGTATAAATGAGAAACCGCTTCCTGGAAGTTTCCCGTCTAGCGAAAGTTCATCTCAACAAACTGATAATTCTGAATTATCTATATTAGATAAGATACCTTATGAATCAAAAACAGAGCCTCCTGCTGATTTACCCAATGAAGATATTGATAAGTCTGTTCCTTCTCAGCCAGTTTCTAACTCAGAAGTTGTTGATCGAGCAGGAGCTCCAAACTGTGGAGAAAATTCTAGCTGTTCTATTAGAGATGACCAAGGTCTTGCGCAAGAACATACTAGTGAAGGTCTTGTAGTCAGTGGTGGGGCACTAGAGCATACTGGATTTACTTCTGATGGCTTGCGACCTGTTGAATGGATCGGTGATTCAATTCAAGATGTCAGTGAAAAAAACTTCTATCGTTCTTGTCGCATTGATGGAGTAACATATGAGCTACAAGAACATGCTCTCTTCCAGTCTAGTCATGGCAAATTGATACCCTCTAAGCTTCAGTCAATGTGGGAGGACAGGAAAACTGGGTCAAAGTGGGTTATAGTTAACAGTTGCTACTTTCCTAGTGACTTACCAGAGCATGTTAGTCGTCCATCTACACCTGAAAGTAATGAGGTACACTGTCTTCTTGTATACATATTATTGTTTTTGTATTTATGTTTTGCAAAAGTTTCGTATCATATTAAAGTTAAGTGGTTGCCTTGTTGGGATAATATCTGTTACTACACGAGTGGGGCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

1004

Amino Acids

108.21

Weight (kDa)

5.94

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7797	PF25073	29 - 85	7.4e-23	Domain of unknown function (DUF7797)
PHD	PF00628	384 - 430	2.1e-06	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50620 AT3G20280 AT3G20280 AT3G20280 AT3G20280 AT3G20280
fragaria_vesca	FvH4_3g23572 FvH4_3g23572 FvH4_3g23572 FvH4_3g23572
malus_domestica	MD03G1193000.v1.1 MD11G1209200.v1.1
prunus_persica	Prupe.4G224000_v2.0.a1 Prupe.4G224000_v2.0.a1
pyrus_communis	pycom03g14530 pycom03g14540 pycom11g18420
rosa_chinensis	RchiOBHm_Chr5g0041571
rosa_laevigata	RLG00000034083
rosa_multiflora	Rmu_sc0003051.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038930
rosa_rugosa	Rorug05G0193800 Rorug05G0193900 Rorug05G0193900
rosa_samantha	Rh5AG279500 Rh5BG283900 Rh5BG284800 Rh5CG316800 Rh5DG293600
rosa_wichuraiana	Rw5G026310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1263
Acc16I	TGCGCA	2 cut(s)	429, 2547
AccB1I	GGYRCC	2 cut(s)	56, 856
AccB7I	CCANNNNNTGG	2 cut(s)	971, 2501
AccI	GTMKAC	2 cut(s)	158, 2904
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	7 cut(s)	171, 781, 940, 1257, 1899, 2235, 2509
AcuI	CTGAAG	3 cut(s)	1014, 1875, 2753
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	6 cut(s)	774, 1384, 1429, 1459, 2095, 2889
AfiI	CCNNNNNNNGG	9 cut(s)	101, 102, 206, 971, 1328, 1700, 2114, 2309, 2501
AflIII	ACRYGT	2 cut(s)	1229, 1552
AgeI	ACCGGT	1 cut(s)	802
AhlI	ACTAGT	1 cut(s)	2558
AjnI	CCWGG	3 cut(s)	664, 982, 2308
AjuI	GAANNNNNNNTTGG	4 cut(s)	83, 115, 853, 885
Alw21I	GWGCWC	3 cut(s)	814, 1237, 2494
Alw26I	GTCTC	3 cut(s)	573, 1765, 1972
Alw44I	GTGCAC	1 cut(s)	1233
Ama87I	CYCGRG	2 cut(s)	1263, 2145
AoxI	GGCC	6 cut(s)	9, 41, 74, 104, 821, 3006
ApaI	GGGCCC	2 cut(s)	78, 108
ApaLI	GTGCAC	1 cut(s)	1233
ApeKI	GCWGC	7 cut(s)	425, 437, 479, 563, 926, 1090, 2280
ApoI	RAATTY	7 cut(s)	171, 781, 940, 1257, 1899, 2235, 2509
AsiGI	ACCGGT	1 cut(s)	802
Asp700I	GAANNNNTTC	2 cut(s)	685, 2072
AspA2I	CCTAGG	1 cut(s)	26
AspLEI	GCGC	3 cut(s)	59, 430, 2548
AspS9I	GGNCC	7 cut(s)	74, 75, 104, 105, 356, 842, 3006
AsuHPI	GGTGA	6 cut(s)	725, 1233, 1280, 1937, 1995, 2654
AvaI	CYCGRG	2 cut(s)	1263, 2145
AvaII	GGWCC	2 cut(s)	356, 842
AvrII	CCTAGG	1 cut(s)	26
AxyI	CCTNAGG	1 cut(s)	1495
BaeGI	GKGCMC	5 cut(s)	78, 108, 1237, 1601, 2590
BamHI	GGATCC	2 cut(s)	743, 1110
BanI	GGYRCC	2 cut(s)	56, 856
BanII	GRGCYC	3 cut(s)	78, 108, 2494
BarI	GAAGNNNNNNTAC	8 cut(s)	1375, 1407, 1420, 1450, 1452, 1482, 2880, 2912
BauI	CACGAG	2 cut(s)	930, 2998
BbsI	GAAGAC	2 cut(s)	990, 2888
Bbv12I	GWGCWC	3 cut(s)	814, 1237, 2494
BbvI	GCAGC	7 cut(s)	412, 424, 491, 575, 938, 1077, 2292
BceAI	ACGGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	6 cut(s)	768, 802, 2840, 2874, 2925, 2959
BciT130I	CCWGG	3 cut(s)	666, 984, 2310
BclI	TGATCA	1 cut(s)	1096
BcoDI	GTCTC	3 cut(s)	573, 1765, 1972
BcuI	ACTAGT	1 cut(s)	2558
BfmI	CTRYAG	1 cut(s)	1479
BfoI	RGCGCY	1 cut(s)	60
BlnI	CCTAGG	1 cut(s)	26
BlpI	GCTNAGC	1 cut(s)	83
BmcAI	AGTACT	1 cut(s)	1459
Bme1390I	CCNGG	3 cut(s)	666, 984, 2310
Bme18I	GGWCC	2 cut(s)	356, 842
BmeT110I	CYCGRG	2 cut(s)	1263, 2145
BmgT120I	GGNCC	7 cut(s)	74, 75, 104, 105, 356, 842, 3006
BmrFI	CCNGG	3 cut(s)	666, 984, 2310
BmrI	ACTGGG	1 cut(s)	2805
BmsI	GCATC	6 cut(s)	274, 1179, 1192, 1277, 1810, 2212
BmuI	ACTGGG	1 cut(s)	2805
BoxI	GACNNNNGTC	2 cut(s)	994, 2538
BpiI	GAAGAC	2 cut(s)	990, 2888
BpmI	CTGGAG	1 cut(s)	1393
Bpu1102I	GCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	819
BsaAI	YACGTR	1 cut(s)	1230
BsaBI	GATNNNNATC	3 cut(s)	1169, 1824, 2031
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	2 cut(s)	1765, 1972
BsaJI	CCNNGG	5 cut(s)	26, 162, 264, 490, 2536
BsaWI	WCCGGW	1 cut(s)	802
BsaXI	ACNNNNNCTCC	6 cut(s)	580, 610, 2182, 2212, 2389, 2419
Bsc4I	CCNNNNNNNGG	9 cut(s)	101, 102, 206, 971, 1328, 1700, 2114, 2309, 2501
Bse118I	RCCGGY	3 cut(s)	59, 802, 1364
Bse21I	CCTNAGG	1 cut(s)	1495
Bse3DI	GCAATG	2 cut(s)	1309, 1650
Bse8I	GATNNNNATC	3 cut(s)	1169, 1824, 2031
BseBI	CCWGG	3 cut(s)	666, 984, 2310
BseDI	CCNNGG	5 cut(s)	26, 162, 264, 490, 2536
BseGI	GGATG	7 cut(s)	289, 412, 796, 1099, 1664, 1690, 1897
BseJI	GATNNNNATC	3 cut(s)	1169, 1824, 2031
BseLI	CCNNNNNNNGG	9 cut(s)	101, 102, 206, 971, 1328, 1700, 2114, 2309, 2501
BseMI	GCAATG	2 cut(s)	1309, 1650
BseMII	CTCAG	4 cut(s)	74, 1509, 2465, 2481
BseRI	GAGGAG	3 cut(s)	233, 561, 909
BseSI	GKGCMC	5 cut(s)	78, 108, 1237, 1601, 2590
BseXI	GCAGC	7 cut(s)	412, 424, 491, 575, 938, 1077, 2292
BseYI	CCCAGC	2 cut(s)	78, 697
BsgI	GTGCAG	2 cut(s)	591, 1264
Bsh1285I	CGRYCG	1 cut(s)	1434
BshFI	GGCC	6 cut(s)	11, 43, 76, 106, 823, 3008
BshNI	GGYRCC	2 cut(s)	56, 856
BshTI	ACCGGT	1 cut(s)	802
BsiEI	CGRYCG	1 cut(s)	1434
BsiHKAI	GWGCWC	3 cut(s)	814, 1237, 2494
BsiHKCI	CYCGRG	2 cut(s)	1263, 2145
BsiSI	CCGG	4 cut(s)	60, 200, 803, 1365
BslFI	GGGAC	6 cut(s)	134, 342, 1388, 1403, 1448, 1873
BslI	CCNNNNNNNGG	9 cut(s)	101, 102, 206, 971, 1328, 1700, 2114, 2309, 2501
BsmAI	GTCTC	3 cut(s)	573, 1765, 1972
BsmBI	CGTCTC	1 cut(s)	573
BsmFI	GGGAC	6 cut(s)	134, 342, 1388, 1403, 1448, 1873
BsnI	GGCC	6 cut(s)	11, 43, 76, 106, 823, 3008
Bso31I	GGTCTC	2 cut(s)	1765, 1972
BsoBI	CYCGRG	2 cut(s)	1263, 2145
Bsp120I	GGGCCC	2 cut(s)	74, 104
Bsp1286I	GDGCHC	7 cut(s)	78, 108, 814, 1237, 1601, 2494, 2590
Bsp1720I	GCTNAGC	1 cut(s)	83
Bsp19I	CCATGG	2 cut(s)	162, 490
BspANI	GGCC	6 cut(s)	11, 43, 76, 106, 823, 3008
BspCNI	CTCAG	4 cut(s)	75, 1508, 2464, 2480
BspT107I	GGYRCC	2 cut(s)	56, 856
BspTNI	GGTCTC	2 cut(s)	1765, 1972
BsrDI	GCAATG	2 cut(s)	1309, 1650
BsrFI	RCCGGY	3 cut(s)	59, 802, 1364
BssAI	RCCGGY	3 cut(s)	59, 802, 1364
BssECI	CCNNGG	5 cut(s)	26, 162, 264, 490, 2536
BssNAI	GTATAC	1 cut(s)	2905
BssNI	GRCGYC	1 cut(s)	57
BssSI	CACGAG	2 cut(s)	930, 2998
BssT1I	CCWWGG	5 cut(s)	26, 162, 264, 490, 2536
Bst1107I	GTATAC	1 cut(s)	2905
Bst2BI	CACGAG	2 cut(s)	930, 2998
Bst2UI	CCWGG	3 cut(s)	666, 984, 2310
Bst6I	CTCTTC	4 cut(s)	32, 122, 676, 2735
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	1287
BstBAI	YACGTR	1 cut(s)	1230
BstC8I	GCNNGC	4 cut(s)	61, 150, 1366, 2621
BstDEI	CTNAG	8 cut(s)	83, 393, 1298, 1323, 1495, 2451, 2467, 2763
BstDSI	CCRYGG	2 cut(s)	162, 490
BstF5I	GGATG	7 cut(s)	289, 412, 796, 1099, 1664, 1690, 1897
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	3 cut(s)	59, 430, 2548
BstMAI	GTCTC	3 cut(s)	573, 1765, 1972
BstMCI	CGRYCG	1 cut(s)	1434
BstMWI	GCNNNNNNNGC	9 cut(s)	196, 241, 284, 293, 434, 1087, 1158, 1167, 1287
BstNI	CCWGG	3 cut(s)	666, 984, 2310
BstNSI	RCATGY	4 cut(s)	1209, 1556, 2726, 2855
BstPAI	GACNNNNGTC	2 cut(s)	994, 2538
BstSCI	CCNGG	3 cut(s)	664, 982, 2308
BstSFI	CTRYAG	1 cut(s)	1479
BstSLI	GKGCMC	5 cut(s)	78, 108, 1237, 1601, 2590
BstV1I	GCAGC	7 cut(s)	412, 424, 491, 575, 938, 1077, 2292
BstV2I	GAAGAC	2 cut(s)	990, 2888
BstX2I	RGATCY	6 cut(s)	4, 743, 752, 1110, 1519, 2138
BstYI	RGATCY	6 cut(s)	4, 743, 752, 1110, 1519, 2138
BstZ17I	GTATAC	1 cut(s)	2905
Bsu36I	CCTNAGG	1 cut(s)	1495
BsuRI	GGCC	6 cut(s)	11, 43, 76, 106, 823, 3008
BtgI	CCRYGG	2 cut(s)	162, 490
BtsCI	GGATG	7 cut(s)	289, 412, 796, 1099, 1664, 1690, 1897
BtsI	GCAGTG	3 cut(s)	664, 1276, 1678
BtsIMutI	CAGTG	9 cut(s)	664, 891, 918, 1047, 1276, 1678, 2584, 2668, 2890
Cac8I	GCNNGC	4 cut(s)	61, 150, 1366, 2621
CfoI	GCGC	3 cut(s)	59, 430, 2548
Cfr10I	RCCGGY	3 cut(s)	59, 802, 1364
Cfr13I	GGNCC	7 cut(s)	74, 75, 104, 105, 356, 842, 3006
CseI	GACGC	1 cut(s)	555
Csp6I	GTAC	6 cut(s)	773, 1383, 1428, 1458, 2094, 2888
CspAI	ACCGGT	1 cut(s)	802
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviQI	GTAC	6 cut(s)	773, 1383, 1428, 1458, 2094, 2888
DdeI	CTNAG	8 cut(s)	83, 393, 1298, 1323, 1495, 2451, 2467, 2763
DinI	GGCGCC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	4 cut(s)	32, 122, 676, 2735
EarI	CTCTTC	4 cut(s)	32, 122, 676, 2735
EciI	GGCGGA	3 cut(s)	78, 152, 195
Ecl136II	GAGCTC	1 cut(s)	2492
Eco130I	CCWWGG	5 cut(s)	26, 162, 264, 490, 2536
Eco24I	GRGCYC	3 cut(s)	78, 108, 2494
Eco31I	GGTCTC	2 cut(s)	1765, 1972
Eco32I	GATATC	1 cut(s)	1220
Eco47I	GGWCC	2 cut(s)	356, 842
Eco53kI	GAGCTC	1 cut(s)	2492
Eco57I	CTGAAG	3 cut(s)	1014, 1875, 2753
Eco81I	CCTNAGG	1 cut(s)	1495
Eco88I	CYCGRG	2 cut(s)	1263, 2145
EcoICRI	GAGCTC	1 cut(s)	2492
EcoO109I	RGGNCCY	5 cut(s)	74, 75, 104, 356, 3006
EcoRI	GAATTC	2 cut(s)	940, 1257
EcoRII	CCWGG	3 cut(s)	664, 982, 2308
EcoRV	GATATC	1 cut(s)	1220
EcoT14I	CCWWGG	5 cut(s)	26, 162, 264, 490, 2536
EcoT22I	ATGCAT	2 cut(s)	766, 1207
EcoT38I	GRGCYC	3 cut(s)	78, 108, 2494
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	5 cut(s)	26, 162, 264, 490, 2536
Esp3I	CGTCTC	1 cut(s)	573
FalI	AAGNNNNNCTT	2 cut(s)	998, 1030
FaqI	GGGAC	6 cut(s)	134, 342, 1388, 1403, 1448, 1873
FauNDI	CATATG	1 cut(s)	2707
FbaI	TGATCA	1 cut(s)	1096
FblI	GTMKAC	2 cut(s)	158, 2904
FokI	GGATG	7 cut(s)	296, 419, 783, 1086, 1651, 1697, 1904
FriOI	GRGCYC	3 cut(s)	78, 108, 2494
FspI	TGCGCA	2 cut(s)	429, 2547
GlaI	GCGC	3 cut(s)	58, 429, 2547
GsaI	CCCAGC	2 cut(s)	82, 701
GsuI	CTGGAG	1 cut(s)	1393
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	6 cut(s)	11, 43, 76, 106, 823, 3008
HapII	CCGG	4 cut(s)	60, 200, 803, 1365
HgaI	GACGC	1 cut(s)	555
HhaI	GCGC	3 cut(s)	59, 430, 2548
Hin1I	GRCGYC	1 cut(s)	57
Hin6I	GCGC	3 cut(s)	57, 428, 2546
HinP1I	GCGC	3 cut(s)	57, 428, 2546
HincII	GTYRAC	3 cut(s)	159, 366, 2818
HindII	GTYRAC	3 cut(s)	159, 366, 2818
HindIII	AAGCTT	3 cut(s)	466, 1023, 2765
HpaI	GTTAAC	1 cut(s)	2818
HpaII	CCGG	4 cut(s)	60, 200, 803, 1365
HphI	GGTGA	6 cut(s)	725, 1233, 1280, 1937, 1995, 2654
Hpy166II	GTNNAC	9 cut(s)	159, 366, 842, 905, 989, 1235, 2818, 2890, 2905
Hpy8I	GTNNAC	9 cut(s)	159, 366, 842, 905, 989, 1235, 2818, 2890, 2905
Hpy99I	CGWCG	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	1229
HpyF10VI	GCNNNNNNNGC	9 cut(s)	196, 241, 284, 293, 434, 1087, 1158, 1167, 1287
HpyF3I	CTNAG	8 cut(s)	83, 393, 1298, 1323, 1495, 2451, 2467, 2763
HpySE526I	ACGT	1 cut(s)	1229
Hsp92I	GRCGYC	1 cut(s)	57
HspAI	GCGC	3 cut(s)	57, 428, 2546
KasI	GGCGCC	1 cut(s)	56
KflI	GGGWCCC	1 cut(s)	356
KroI	GCCGGC	2 cut(s)	59, 1364
KroNI	GCCGGC	2 cut(s)	61, 1366
Ksp22I	TGATCA	1 cut(s)	1096
KspAI	GTTAAC	1 cut(s)	2818
LmnI	GCTCC	6 cut(s)	196, 241, 817, 1511, 2489, 2497
Lsp1109I	GCAGC	7 cut(s)	412, 424, 491, 575, 938, 1077, 2292
LweI	GCATC	6 cut(s)	274, 1179, 1192, 1277, 1810, 2212
MaeII	ACGT	1 cut(s)	1229
MaeIII	GTNAC	6 cut(s)	592, 913, 1293, 2701, 2837, 2990
MflI	RGATCY	6 cut(s)	4, 743, 752, 1110, 1519, 2138
MhlI	GDGCHC	7 cut(s)	78, 108, 814, 1237, 1601, 2494, 2590
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	910
MmeI	TCCRAC	2 cut(s)	839, 2238
Mph1103I	ATGCAT	2 cut(s)	766, 1207
MreI	CGCCGGCG	1 cut(s)	59
MroNI	GCCGGC	2 cut(s)	59, 1364
MroXI	GAANNNNTTC	2 cut(s)	685, 2072
MslI	CAYNNNNRTG	2 cut(s)	896, 2559
MspA1I	CMGCKG	4 cut(s)	82, 437, 482, 1090
MspI	CCGG	4 cut(s)	60, 200, 803, 1365
MspR9I	CCNGG	3 cut(s)	666, 984, 2310
MvaI	CCWGG	3 cut(s)	666, 984, 2310
MwoI	GCNNNNNNNGC	9 cut(s)	196, 241, 284, 293, 434, 1087, 1158, 1167, 1287
NaeI	GCCGGC	2 cut(s)	61, 1366
NarI	GGCGCC	1 cut(s)	57
NcoI	CCATGG	2 cut(s)	162, 490
NdeI	CATATG	1 cut(s)	2707
NgoMIV	GCCGGC	2 cut(s)	59, 1364
NmuCI	GTSAC	3 cut(s)	913, 1293, 2837
NsbI	TGCGCA	2 cut(s)	429, 2547
NsiI	ATGCAT	2 cut(s)	766, 1207
NspI	RCATGY	4 cut(s)	1209, 1556, 2726, 2855
PaeR7I	CTCGAG	2 cut(s)	1263, 2145
PciI	ACATGT	1 cut(s)	1552
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PdiI	GCCGGC	2 cut(s)	61, 1366
PdmI	GAANNNNTTC	2 cut(s)	685, 2072
PflMI	CCANNNNNTGG	2 cut(s)	971, 2501
PfoI	TCCNGGA	1 cut(s)	2308
PinAI	ACCGGT	1 cut(s)	802
Ple19I	CGATCG	1 cut(s)	1434
PleI	GAGTC	1 cut(s)	910
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	910
Ppu21I	YACGTR	1 cut(s)	1230
PpuMI	RGGWCCY	1 cut(s)	356
PscI	ACATGT	1 cut(s)	1552
PshAI	GACNNNNGTC	2 cut(s)	994, 2538
Psp124BI	GAGCTC	1 cut(s)	2494
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	3 cut(s)	664, 982, 2308
PspFI	CCCAGC	2 cut(s)	78, 697
PspGI	CCWGG	3 cut(s)	664, 982, 2308
PspOMI	GGGCCC	2 cut(s)	74, 104
PspPI	GGNCC	7 cut(s)	74, 75, 104, 105, 356, 842, 3006
PspPPI	RGGWCCY	1 cut(s)	356
PspXI	VCTCGAGB	1 cut(s)	1263
PsrI	GAACNNNNNNTAC	2 cut(s)	1173, 1205
PsuI	RGATCY	6 cut(s)	4, 743, 752, 1110, 1519, 2138
PvuI	CGATCG	1 cut(s)	1434
PvuII	CAGCTG	3 cut(s)	82, 482, 1090
RsaI	GTAC	6 cut(s)	774, 1384, 1429, 1459, 2095, 2889
RsaNI	GTAC	6 cut(s)	773, 1383, 1428, 1458, 2094, 2888
RseI	CAYNNNNRTG	2 cut(s)	896, 2559
SacI	GAGCTC	1 cut(s)	2494
SalI	GTCGAC	1 cut(s)	157
Sau96I	GGNCC	7 cut(s)	74, 75, 104, 105, 356, 842, 3006
ScaI	AGTACT	1 cut(s)	1459
SchI	GAGTC	1 cut(s)	910
ScrFI	CCNGG	3 cut(s)	666, 984, 2310
SduI	GDGCHC	7 cut(s)	78, 108, 814, 1237, 1601, 2494, 2590
SfaNI	GCATC	6 cut(s)	274, 1179, 1192, 1277, 1810, 2212
SfcI	CTRYAG	1 cut(s)	1479
SfoI	GGCGCC	1 cut(s)	58
Sfr274I	CTCGAG	2 cut(s)	1263, 2145
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	2 cut(s)	356, 842
SlaI	CTCGAG	2 cut(s)	1263, 2145
SmiMI	CAYNNNNRTG	2 cut(s)	896, 2559
SmlI	CTYRAG	3 cut(s)	834, 1263, 2145
SmoI	CTYRAG	3 cut(s)	834, 1263, 2145
SpeI	ACTAGT	1 cut(s)	2558
SspDI	GGCGCC	1 cut(s)	56
SspI	AATATT	2 cut(s)	1609, 2041
SstI	GAGCTC	1 cut(s)	2494
StyD4I	CCNGG	3 cut(s)	664, 982, 2308
StyI	CCWWGG	5 cut(s)	26, 162, 264, 490, 2536
TaiI	ACGT	1 cut(s)	1232
TaqI	TCGA	5 cut(s)	158, 175, 1264, 2146, 2482
TatI	WGTACW	4 cut(s)	772, 1382, 1457, 2093
TauI	GCSGC	3 cut(s)	14, 25, 262
TscAI	CASTG	9 cut(s)	664, 898, 918, 1054, 1283, 1678, 2584, 2668, 2897
TseFI	GTSAC	3 cut(s)	913, 1293, 2837
TseI	GCWGC	7 cut(s)	425, 437, 479, 563, 926, 1090, 2280
Tsp45I	GTSAC	3 cut(s)	913, 1293, 2837
TspDTI	ATGAA	9 cut(s)	348, 423, 569, 678, 1626, 2113, 2325, 2403, 2439
TspGWI	ACGGA	2 cut(s)	209, 1904
TspRI	CASTG	9 cut(s)	664, 898, 918, 1054, 1283, 1678, 2584, 2668, 2897
Van91I	CCANNNNNTGG	2 cut(s)	971, 2501
VneI	GTGCAC	1 cut(s)	1233
VpaK11BI	GGWCC	2 cut(s)	356, 842
XapI	RAATTY	7 cut(s)	171, 781, 940, 1257, 1899, 2235, 2509
XbaI	TCTAGA	1 cut(s)	2171
XceI	RCATGY	4 cut(s)	1209, 1556, 2726, 2855
XcmI	CCANNNNNNNNNTGG	2 cut(s)	271, 2741
XhoI	CTCGAG	2 cut(s)	1263, 2145
XmaJI	CCTAGG	1 cut(s)	26
XmiI	GTMKAC	2 cut(s)	158, 2904
XmnI	GAANNNNTTC	2 cut(s)	685, 2072
ZrmI	AGTACT	1 cut(s)	1459
Zsp2I	ATGCAT	2 cut(s)	766, 1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.