PHD zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G50620 AT3G20280 AT3G20280 AT3G20280 AT3G20280 AT3G20280 |
| fragaria_vesca | FvH4_3g23572 FvH4_3g23572 FvH4_3g23572 FvH4_3g23572 |
| malus_domestica | MD03G1193000.v1.1 MD11G1209200.v1.1 |
| prunus_persica | Prupe.4G224000_v2.0.a1 Prupe.4G224000_v2.0.a1 |
| pyrus_communis | pycom03g14530 pycom03g14540 pycom11g18420 |
| rosa_chinensis | RchiOBHm_Chr5g0041571 |
| rosa_laevigata | RLG00000034083 |
| rosa_multiflora | Rmu_sc0003051.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00038930 |
| rosa_rugosa | Rorug05G0193800 Rorug05G0193900 Rorug05G0193900 |
| rosa_samantha | Rh5AG279500 Rh5BG283900 Rh5BG284800 Rh5CG316800 Rh5DG293600 |
| rosa_wichuraiana | Rw5G026310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 1263 |
| Acc16I | TGCGCA | 2 cut(s) | 429, 2547 |
| AccB1I | GGYRCC | 2 cut(s) | 56, 856 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 971, 2501 |
| AccI | GTMKAC | 1 cut(s) | 158 |
| AcoI | YGGCCR | 1 cut(s) | 9 |
| AcsI | RAATTY | 7 cut(s) | 171, 781, 940, 1257, 1899, 2235, 2509 |
| AcuI | CTGAAG | 3 cut(s) | 1014, 1875, 2753 |
| AcyI | GRCGYC | 1 cut(s) | 57 |
| AfaI | GTAC | 6 cut(s) | 774, 1384, 1429, 1459, 2095, 2891 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 101, 102, 206, 971, 1328, 1700, 2114, 2309, 2501 |
| AflIII | ACRYGT | 2 cut(s) | 1229, 1552 |
| AgeI | ACCGGT | 1 cut(s) | 802 |
| AhlI | ACTAGT | 1 cut(s) | 2558 |
| AjnI | CCWGG | 3 cut(s) | 664, 982, 2308 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 83, 115, 853, 885 |
| Alw21I | GWGCWC | 3 cut(s) | 814, 1237, 2494 |
| Alw26I | GTCTC | 3 cut(s) | 573, 1765, 1972 |
| Alw44I | GTGCAC | 1 cut(s) | 1233 |
| Ama87I | CYCGRG | 2 cut(s) | 1263, 2145 |
| AoxI | GGCC | 5 cut(s) | 9, 41, 74, 104, 821 |
| ApaI | GGGCCC | 2 cut(s) | 78, 108 |
| ApaLI | GTGCAC | 1 cut(s) | 1233 |
| ApeKI | GCWGC | 7 cut(s) | 425, 437, 479, 563, 926, 1090, 2280 |
| ApoI | RAATTY | 7 cut(s) | 171, 781, 940, 1257, 1899, 2235, 2509 |
| AsiGI | ACCGGT | 1 cut(s) | 802 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 685, 2072, 2949 |
| AspA2I | CCTAGG | 1 cut(s) | 26 |
| AspLEI | GCGC | 3 cut(s) | 59, 430, 2548 |
| AspS9I | GGNCC | 7 cut(s) | 74, 75, 104, 105, 356, 842, 2936 |
| AsuHPI | GGTGA | 6 cut(s) | 725, 1233, 1280, 1937, 1995, 2654 |
| AvaI | CYCGRG | 2 cut(s) | 1263, 2145 |
| AvaII | GGWCC | 3 cut(s) | 356, 842, 2936 |
| AvrII | CCTAGG | 1 cut(s) | 26 |
| AxyI | CCTNAGG | 1 cut(s) | 1495 |
| BaeGI | GKGCMC | 5 cut(s) | 78, 108, 1237, 1601, 2590 |
| BamHI | GGATCC | 2 cut(s) | 743, 1110 |
| BanI | GGYRCC | 2 cut(s) | 56, 856 |
| BanII | GRGCYC | 3 cut(s) | 78, 108, 2494 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 1375, 1407, 1420, 1450, 1452, 1482 |
| BauI | CACGAG | 1 cut(s) | 930 |
| BbsI | GAAGAC | 1 cut(s) | 990 |
| Bbv12I | GWGCWC | 3 cut(s) | 814, 1237, 2494 |
| BbvI | GCAGC | 7 cut(s) | 412, 424, 491, 575, 938, 1077, 2292 |
| BceAI | ACGGC | 1 cut(s) | 70 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 768, 802, 2840, 2874 |
| BciT130I | CCWGG | 3 cut(s) | 666, 984, 2310 |
| BclI | TGATCA | 1 cut(s) | 1096 |
| BcoDI | GTCTC | 3 cut(s) | 573, 1765, 1972 |
| BcuI | ACTAGT | 1 cut(s) | 2558 |
| BfmI | CTRYAG | 1 cut(s) | 1479 |
| BfoI | RGCGCY | 1 cut(s) | 60 |
| BlnI | CCTAGG | 1 cut(s) | 26 |
| BlpI | GCTNAGC | 1 cut(s) | 83 |
| BmcAI | AGTACT | 1 cut(s) | 1459 |
| Bme1390I | CCNGG | 3 cut(s) | 666, 984, 2310 |
| Bme18I | GGWCC | 3 cut(s) | 356, 842, 2936 |
| BmeT110I | CYCGRG | 2 cut(s) | 1263, 2145 |
| BmgT120I | GGNCC | 7 cut(s) | 74, 75, 104, 105, 356, 842, 2936 |
| BmrFI | CCNGG | 3 cut(s) | 666, 984, 2310 |
| BmrI | ACTGGG | 2 cut(s) | 2805, 3079 |
| BmsI | GCATC | 6 cut(s) | 274, 1179, 1192, 1277, 1810, 2212 |
| BmuI | ACTGGG | 2 cut(s) | 2805, 3079 |
| BoxI | GACNNNNGTC | 2 cut(s) | 994, 2538 |
| BpiI | GAAGAC | 1 cut(s) | 990 |
| BpmI | CTGGAG | 1 cut(s) | 1393 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 83 |
| BpuEI | CTTGAG | 1 cut(s) | 819 |
| BsaAI | YACGTR | 1 cut(s) | 1230 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1169, 1824, 2031 |
| BsaHI | GRCGYC | 1 cut(s) | 57 |
| BsaI | GGTCTC | 2 cut(s) | 1765, 1972 |
| BsaJI | CCNNGG | 5 cut(s) | 26, 162, 264, 490, 2536 |
| BsaWI | WCCGGW | 1 cut(s) | 802 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 580, 610, 2182, 2212, 2389, 2419 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 101, 102, 206, 971, 1328, 1700, 2114, 2309, 2501 |
| Bse118I | RCCGGY | 3 cut(s) | 59, 802, 1364 |
| Bse21I | CCTNAGG | 1 cut(s) | 1495 |
| Bse3DI | GCAATG | 2 cut(s) | 1309, 1650 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1169, 1824, 2031 |
| BseBI | CCWGG | 3 cut(s) | 666, 984, 2310 |
| BseDI | CCNNGG | 5 cut(s) | 26, 162, 264, 490, 2536 |
| BseGI | GGATG | 7 cut(s) | 289, 412, 796, 1099, 1664, 1690, 1897 |
| BseJI | GATNNNNATC | 3 cut(s) | 1169, 1824, 2031 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 101, 102, 206, 971, 1328, 1700, 2114, 2309, 2501 |
| BseMI | GCAATG | 2 cut(s) | 1309, 1650 |
| BseMII | CTCAG | 4 cut(s) | 74, 1509, 2465, 2481 |
| BseRI | GAGGAG | 3 cut(s) | 233, 561, 909 |
| BseSI | GKGCMC | 5 cut(s) | 78, 108, 1237, 1601, 2590 |
| BseXI | GCAGC | 7 cut(s) | 412, 424, 491, 575, 938, 1077, 2292 |
| BseYI | CCCAGC | 2 cut(s) | 78, 697 |
| BsgI | GTGCAG | 2 cut(s) | 591, 1264 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1434 |
| BshFI | GGCC | 5 cut(s) | 11, 43, 76, 106, 823 |
| BshNI | GGYRCC | 2 cut(s) | 56, 856 |
| BshTI | ACCGGT | 1 cut(s) | 802 |
| BsiEI | CGRYCG | 1 cut(s) | 1434 |
| BsiHKAI | GWGCWC | 3 cut(s) | 814, 1237, 2494 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1263, 2145 |
| BsiSI | CCGG | 4 cut(s) | 60, 200, 803, 1365 |
| BslFI | GGGAC | 6 cut(s) | 134, 342, 1388, 1403, 1448, 1873 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 101, 102, 206, 971, 1328, 1700, 2114, 2309, 2501 |
| BsmAI | GTCTC | 3 cut(s) | 573, 1765, 1972 |
| BsmBI | CGTCTC | 1 cut(s) | 573 |
| BsmFI | GGGAC | 6 cut(s) | 134, 342, 1388, 1403, 1448, 1873 |
| BsnI | GGCC | 5 cut(s) | 11, 43, 76, 106, 823 |
| Bso31I | GGTCTC | 2 cut(s) | 1765, 1972 |
| BsoBI | CYCGRG | 2 cut(s) | 1263, 2145 |
| Bsp120I | GGGCCC | 2 cut(s) | 74, 104 |
| Bsp1286I | GDGCHC | 7 cut(s) | 78, 108, 814, 1237, 1601, 2494, 2590 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 83 |
| Bsp19I | CCATGG | 2 cut(s) | 162, 490 |
| BspANI | GGCC | 5 cut(s) | 11, 43, 76, 106, 823 |
| BspCNI | CTCAG | 4 cut(s) | 75, 1508, 2464, 2480 |
| BspHI | TCATGA | 1 cut(s) | 2902 |
| BspT107I | GGYRCC | 2 cut(s) | 56, 856 |
| BspTNI | GGTCTC | 2 cut(s) | 1765, 1972 |
| BsrDI | GCAATG | 2 cut(s) | 1309, 1650 |
| BsrFI | RCCGGY | 3 cut(s) | 59, 802, 1364 |
| BssAI | RCCGGY | 3 cut(s) | 59, 802, 1364 |
| BssECI | CCNNGG | 5 cut(s) | 26, 162, 264, 490, 2536 |
| BssNI | GRCGYC | 1 cut(s) | 57 |
| BssSI | CACGAG | 1 cut(s) | 930 |
| BssT1I | CCWWGG | 5 cut(s) | 26, 162, 264, 490, 2536 |
| Bst2BI | CACGAG | 1 cut(s) | 930 |
| Bst2UI | CCWGG | 3 cut(s) | 666, 984, 2310 |
| Bst6I | CTCTTC | 4 cut(s) | 32, 122, 676, 2735 |
| BstACI | GRCGYC | 1 cut(s) | 57 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1287 |
| BstBAI | YACGTR | 1 cut(s) | 1230 |
| BstC8I | GCNNGC | 5 cut(s) | 61, 150, 1366, 2621, 2923 |
| BstDEI | CTNAG | 9 cut(s) | 83, 393, 1298, 1323, 1495, 2451, 2467, 2763, 2961 |
| BstDSI | CCRYGG | 2 cut(s) | 162, 490 |
| BstF5I | GGATG | 7 cut(s) | 289, 412, 796, 1099, 1664, 1690, 1897 |
| BstH2I | RGCGCY | 1 cut(s) | 60 |
| BstHHI | GCGC | 3 cut(s) | 59, 430, 2548 |
| BstMAI | GTCTC | 3 cut(s) | 573, 1765, 1972 |
| BstMCI | CGRYCG | 1 cut(s) | 1434 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 196, 241, 284, 293, 434, 1087, 1158, 1167, 1287 |
| BstNI | CCWGG | 3 cut(s) | 666, 984, 2310 |
| BstNSI | RCATGY | 4 cut(s) | 1209, 1556, 2726, 2855 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 994, 2538 |
| BstSCI | CCNGG | 3 cut(s) | 664, 982, 2308 |
| BstSFI | CTRYAG | 1 cut(s) | 1479 |
| BstSLI | GKGCMC | 5 cut(s) | 78, 108, 1237, 1601, 2590 |
| BstV1I | GCAGC | 7 cut(s) | 412, 424, 491, 575, 938, 1077, 2292 |
| BstV2I | GAAGAC | 1 cut(s) | 990 |
| BstX2I | RGATCY | 6 cut(s) | 4, 743, 752, 1110, 1519, 2138 |
| BstYI | RGATCY | 6 cut(s) | 4, 743, 752, 1110, 1519, 2138 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1495 |
| BsuRI | GGCC | 5 cut(s) | 11, 43, 76, 106, 823 |
| BtgI | CCRYGG | 2 cut(s) | 162, 490 |
| BtsCI | GGATG | 7 cut(s) | 289, 412, 796, 1099, 1664, 1690, 1897 |
| BtsI | GCAGTG | 3 cut(s) | 664, 1276, 1678 |
| BtsIMutI | CAGTG | 9 cut(s) | 664, 891, 918, 1047, 1276, 1678, 2584, 2668, 2974 |
| Cac8I | GCNNGC | 5 cut(s) | 61, 150, 1366, 2621, 2923 |
| CciI | TCATGA | 1 cut(s) | 2902 |
| CfoI | GCGC | 3 cut(s) | 59, 430, 2548 |
| Cfr10I | RCCGGY | 3 cut(s) | 59, 802, 1364 |
| Cfr13I | GGNCC | 7 cut(s) | 74, 75, 104, 105, 356, 842, 2936 |
| CseI | GACGC | 1 cut(s) | 555 |
| Csp6I | GTAC | 6 cut(s) | 773, 1383, 1428, 1458, 2094, 2890 |
| CspAI | ACCGGT | 1 cut(s) | 802 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 219, 254 |
| CviQI | GTAC | 6 cut(s) | 773, 1383, 1428, 1458, 2094, 2890 |
| DdeI | CTNAG | 9 cut(s) | 83, 393, 1298, 1323, 1495, 2451, 2467, 2763, 2961 |
| DinI | GGCGCC | 1 cut(s) | 58 |
| EaeI | YGGCCR | 1 cut(s) | 9 |
| Eam1104I | CTCTTC | 4 cut(s) | 32, 122, 676, 2735 |
| EarI | CTCTTC | 4 cut(s) | 32, 122, 676, 2735 |
| EciI | GGCGGA | 3 cut(s) | 78, 152, 195 |
| Ecl136II | GAGCTC | 1 cut(s) | 2492 |
| Eco130I | CCWWGG | 5 cut(s) | 26, 162, 264, 490, 2536 |
| Eco24I | GRGCYC | 3 cut(s) | 78, 108, 2494 |
| Eco31I | GGTCTC | 2 cut(s) | 1765, 1972 |
| Eco32I | GATATC | 1 cut(s) | 1220 |
| Eco47I | GGWCC | 3 cut(s) | 356, 842, 2936 |
| Eco53kI | GAGCTC | 1 cut(s) | 2492 |
| Eco57I | CTGAAG | 3 cut(s) | 1014, 1875, 2753 |
| Eco81I | CCTNAGG | 1 cut(s) | 1495 |
| Eco88I | CYCGRG | 2 cut(s) | 1263, 2145 |
| EcoICRI | GAGCTC | 1 cut(s) | 2492 |
| EcoO109I | RGGNCCY | 4 cut(s) | 74, 75, 104, 356 |
| EcoRI | GAATTC | 2 cut(s) | 940, 1257 |
| EcoRII | CCWGG | 3 cut(s) | 664, 982, 2308 |
| EcoRV | GATATC | 1 cut(s) | 1220 |
| EcoT14I | CCWWGG | 5 cut(s) | 26, 162, 264, 490, 2536 |
| EcoT22I | ATGCAT | 2 cut(s) | 766, 1207 |
| EcoT38I | GRGCYC | 3 cut(s) | 78, 108, 2494 |
| EgeI | GGCGCC | 1 cut(s) | 58 |
| EheI | GGCGCC | 1 cut(s) | 58 |
| ErhI | CCWWGG | 5 cut(s) | 26, 162, 264, 490, 2536 |
| Esp3I | CGTCTC | 1 cut(s) | 573 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 998, 1030 |
| FaqI | GGGAC | 6 cut(s) | 134, 342, 1388, 1403, 1448, 1873 |
| FauI | CCCGC | 1 cut(s) | 2914 |
| FauNDI | CATATG | 1 cut(s) | 2707 |
| FbaI | TGATCA | 1 cut(s) | 1096 |
| FblI | GTMKAC | 1 cut(s) | 158 |
| FokI | GGATG | 7 cut(s) | 296, 419, 783, 1086, 1651, 1697, 1904 |
| FriOI | GRGCYC | 3 cut(s) | 78, 108, 2494 |
| FspI | TGCGCA | 2 cut(s) | 429, 2547 |
| GlaI | GCGC | 3 cut(s) | 58, 429, 2547 |
| GsaI | CCCAGC | 2 cut(s) | 82, 701 |
| GsuI | CTGGAG | 1 cut(s) | 1393 |
| HaeII | RGCGCY | 1 cut(s) | 60 |
| HaeIII | GGCC | 5 cut(s) | 11, 43, 76, 106, 823 |
| HapII | CCGG | 4 cut(s) | 60, 200, 803, 1365 |
| HgaI | GACGC | 1 cut(s) | 555 |
| HhaI | GCGC | 3 cut(s) | 59, 430, 2548 |
| Hin1I | GRCGYC | 1 cut(s) | 57 |
| Hin6I | GCGC | 3 cut(s) | 57, 428, 2546 |
| HinP1I | GCGC | 3 cut(s) | 57, 428, 2546 |
| HincII | GTYRAC | 3 cut(s) | 159, 366, 2818 |
| HindII | GTYRAC | 3 cut(s) | 159, 366, 2818 |
| HindIII | AAGCTT | 3 cut(s) | 466, 1023, 2765 |
| HpaI | GTTAAC | 1 cut(s) | 2818 |
| HpaII | CCGG | 4 cut(s) | 60, 200, 803, 1365 |
| HphI | GGTGA | 6 cut(s) | 725, 1233, 1280, 1937, 1995, 2654 |
| Hpy166II | GTNNAC | 8 cut(s) | 159, 366, 842, 905, 989, 1235, 2818, 2890 |
| Hpy8I | GTNNAC | 8 cut(s) | 159, 366, 842, 905, 989, 1235, 2818, 2890 |
| Hpy99I | CGWCG | 1 cut(s) | 196 |
| HpyCH4IV | ACGT | 1 cut(s) | 1229 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 196, 241, 284, 293, 434, 1087, 1158, 1167, 1287 |
| HpyF3I | CTNAG | 9 cut(s) | 83, 393, 1298, 1323, 1495, 2451, 2467, 2763, 2961 |
| HpySE526I | ACGT | 1 cut(s) | 1229 |
| Hsp92I | GRCGYC | 1 cut(s) | 57 |
| HspAI | GCGC | 3 cut(s) | 57, 428, 2546 |
| KasI | GGCGCC | 1 cut(s) | 56 |
| KflI | GGGWCCC | 1 cut(s) | 356 |
| KroI | GCCGGC | 2 cut(s) | 59, 1364 |
| KroNI | GCCGGC | 2 cut(s) | 61, 1366 |
| Ksp22I | TGATCA | 1 cut(s) | 1096 |
| KspAI | GTTAAC | 1 cut(s) | 2818 |
| LmnI | GCTCC | 7 cut(s) | 196, 241, 817, 1511, 2489, 2497, 2988 |
| Lsp1109I | GCAGC | 7 cut(s) | 412, 424, 491, 575, 938, 1077, 2292 |
| LweI | GCATC | 6 cut(s) | 274, 1179, 1192, 1277, 1810, 2212 |
| MaeII | ACGT | 1 cut(s) | 1229 |
| MaeIII | GTNAC | 5 cut(s) | 592, 913, 1293, 2701, 2837 |
| MflI | RGATCY | 6 cut(s) | 4, 743, 752, 1110, 1519, 2138 |
| MhlI | GDGCHC | 7 cut(s) | 78, 108, 814, 1237, 1601, 2494, 2590 |
| Mly113I | GGCGCC | 1 cut(s) | 57 |
| MlyI | GAGTC | 1 cut(s) | 910 |
| MmeI | TCCRAC | 2 cut(s) | 839, 2238 |
| Mph1103I | ATGCAT | 2 cut(s) | 766, 1207 |
| MreI | CGCCGGCG | 1 cut(s) | 59 |
| MroNI | GCCGGC | 2 cut(s) | 59, 1364 |
| MroXI | GAANNNNTTC | 3 cut(s) | 685, 2072, 2949 |
| MseI | TTAA | 9 cut(s) | 318, 458, 728, 1358, 1611, 1715, 2045, 2817, 2927 |
| MslI | CAYNNNNRTG | 2 cut(s) | 896, 2559 |
| MspA1I | CMGCKG | 4 cut(s) | 82, 437, 482, 1090 |
| MspI | CCGG | 4 cut(s) | 60, 200, 803, 1365 |
| MspR9I | CCNGG | 3 cut(s) | 666, 984, 2310 |
| MvaI | CCWGG | 3 cut(s) | 666, 984, 2310 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 196, 241, 284, 293, 434, 1087, 1158, 1167, 1287 |
| NaeI | GCCGGC | 2 cut(s) | 61, 1366 |
| NarI | GGCGCC | 1 cut(s) | 57 |
| NcoI | CCATGG | 2 cut(s) | 162, 490 |
| NdeI | CATATG | 1 cut(s) | 2707 |
| NgoMIV | GCCGGC | 2 cut(s) | 59, 1364 |
| NmuCI | GTSAC | 3 cut(s) | 913, 1293, 2837 |
| NsbI | TGCGCA | 2 cut(s) | 429, 2547 |
| NsiI | ATGCAT | 2 cut(s) | 766, 1207 |
| NspI | RCATGY | 4 cut(s) | 1209, 1556, 2726, 2855 |
| PaeR7I | CTCGAG | 2 cut(s) | 1263, 2145 |
| PagI | TCATGA | 1 cut(s) | 2902 |
| PciI | ACATGT | 1 cut(s) | 1552 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 164 |
| PdiI | GCCGGC | 2 cut(s) | 61, 1366 |
| PdmI | GAANNNNTTC | 3 cut(s) | 685, 2072, 2949 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 971, 2501 |
| PfoI | TCCNGGA | 1 cut(s) | 2308 |
| PinAI | ACCGGT | 1 cut(s) | 802 |
| Ple19I | CGATCG | 1 cut(s) | 1434 |
| PleI | GAGTC | 1 cut(s) | 910 |
| PluTI | GGCGCC | 1 cut(s) | 60 |
| PpsI | GAGTC | 1 cut(s) | 910 |
| Ppu21I | YACGTR | 1 cut(s) | 1230 |
| PpuMI | RGGWCCY | 1 cut(s) | 356 |
| PscI | ACATGT | 1 cut(s) | 1552 |
| PshAI | GACNNNNGTC | 2 cut(s) | 994, 2538 |
| Psp124BI | GAGCTC | 1 cut(s) | 2494 |
| Psp5II | RGGWCCY | 1 cut(s) | 356 |
| Psp6I | CCWGG | 3 cut(s) | 664, 982, 2308 |
| PspFI | CCCAGC | 2 cut(s) | 78, 697 |
| PspGI | CCWGG | 3 cut(s) | 664, 982, 2308 |
| PspOMI | GGGCCC | 2 cut(s) | 74, 104 |
| PspPI | GGNCC | 7 cut(s) | 74, 75, 104, 105, 356, 842, 2936 |
| PspPPI | RGGWCCY | 1 cut(s) | 356 |
| PspXI | VCTCGAGB | 1 cut(s) | 1263 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1173, 1205 |
| PsuI | RGATCY | 6 cut(s) | 4, 743, 752, 1110, 1519, 2138 |
| PvuI | CGATCG | 1 cut(s) | 1434 |
| PvuII | CAGCTG | 3 cut(s) | 82, 482, 1090 |
| RsaI | GTAC | 6 cut(s) | 774, 1384, 1429, 1459, 2095, 2891 |
| RsaNI | GTAC | 6 cut(s) | 773, 1383, 1428, 1458, 2094, 2890 |
| RseI | CAYNNNNRTG | 2 cut(s) | 896, 2559 |
| SacI | GAGCTC | 1 cut(s) | 2494 |
| SalI | GTCGAC | 1 cut(s) | 157 |
| SaqAI | TTAA | 9 cut(s) | 318, 458, 728, 1358, 1611, 1715, 2045, 2817, 2927 |
| Sau96I | GGNCC | 7 cut(s) | 74, 75, 104, 105, 356, 842, 2936 |
| ScaI | AGTACT | 1 cut(s) | 1459 |
| SchI | GAGTC | 1 cut(s) | 910 |
| ScrFI | CCNGG | 3 cut(s) | 666, 984, 2310 |
| SduI | GDGCHC | 7 cut(s) | 78, 108, 814, 1237, 1601, 2494, 2590 |
| SfaNI | GCATC | 6 cut(s) | 274, 1179, 1192, 1277, 1810, 2212 |
| SfcI | CTRYAG | 1 cut(s) | 1479 |
| SfoI | GGCGCC | 1 cut(s) | 58 |
| Sfr274I | CTCGAG | 2 cut(s) | 1263, 2145 |
| SgrAI | CRCCGGYG | 1 cut(s) | 59 |
| SinI | GGWCC | 3 cut(s) | 356, 842, 2936 |
| SlaI | CTCGAG | 2 cut(s) | 1263, 2145 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 896, 2559 |
| SmlI | CTYRAG | 3 cut(s) | 834, 1263, 2145 |
| SmoI | CTYRAG | 3 cut(s) | 834, 1263, 2145 |
| SpeI | ACTAGT | 1 cut(s) | 2558 |
| SspDI | GGCGCC | 1 cut(s) | 56 |
| SspI | AATATT | 2 cut(s) | 1609, 2041 |
| SstI | GAGCTC | 1 cut(s) | 2494 |
| StyD4I | CCNGG | 3 cut(s) | 664, 982, 2308 |
| StyI | CCWWGG | 5 cut(s) | 26, 162, 264, 490, 2536 |
| TaiI | ACGT | 1 cut(s) | 1232 |
| TaqI | TCGA | 5 cut(s) | 158, 175, 1264, 2146, 2482 |
| TatI | WGTACW | 4 cut(s) | 772, 1382, 1457, 2093 |
| TauI | GCSGC | 3 cut(s) | 14, 25, 262 |
| Tru1I | TTAA | 9 cut(s) | 318, 458, 728, 1358, 1611, 1715, 2045, 2817, 2927 |
| Tru9I | TTAA | 9 cut(s) | 318, 458, 728, 1358, 1611, 1715, 2045, 2817, 2927 |
| TscAI | CASTG | 9 cut(s) | 664, 898, 918, 1054, 1283, 1678, 2584, 2668, 2974 |
| TseFI | GTSAC | 3 cut(s) | 913, 1293, 2837 |
| TseI | GCWGC | 7 cut(s) | 425, 437, 479, 563, 926, 1090, 2280 |
| Tsp45I | GTSAC | 3 cut(s) | 913, 1293, 2837 |
| TspGWI | ACGGA | 3 cut(s) | 209, 1904, 3001 |
| TspRI | CASTG | 9 cut(s) | 664, 898, 918, 1054, 1283, 1678, 2584, 2668, 2974 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 971, 2501 |
| VneI | GTGCAC | 1 cut(s) | 1233 |
| VpaK11BI | GGWCC | 3 cut(s) | 356, 842, 2936 |
| XapI | RAATTY | 7 cut(s) | 171, 781, 940, 1257, 1899, 2235, 2509 |
| XbaI | TCTAGA | 1 cut(s) | 2171 |
| XceI | RCATGY | 4 cut(s) | 1209, 1556, 2726, 2855 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 271, 2741 |
| XhoI | CTCGAG | 2 cut(s) | 1263, 2145 |
| XmaJI | CCTAGG | 1 cut(s) | 26 |
| XmiI | GTMKAC | 1 cut(s) | 158 |
| XmnI | GAANNNNTTC | 3 cut(s) | 685, 2072, 2949 |
| ZrmI | AGTACT | 1 cut(s) | 1459 |
| Zsp2I | ATGCAT | 2 cut(s) | 766, 1207 |