Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Reverse (-)

18943447 .. 18945812

Gene Structure 2366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAATCAGAATTCCAGCAACATCACTTCCTTCTCCACGATCATCAACACCAGAGACCAAGAAACTCAGGATTGATTCGTTACCAATCAGCACCAAGTTCGTACTTTTCGAGTTTCGGTGAATCAATCGAAGAGTTTTTAGATCGACCCACAAGTCCTGAAACTGAGCGAATCTTATCTGGCTTTTTACAAACCACCGACACAAGCGACAACGTTGATAGTTTCCTTCACCATACTTTTAACAGTGATGGAACTGAGAAGAAACCTCCGGAAGTTAAAACAGAGGACGAAGATGCTGAAATTCCGGTGACTGCGACGGCGACGGCGATGGAGGTTGTTGTTTCCGGTGATGGTGAAATCTCAGTGAATCCTGAAGTATCGATTGGGTATGTGGCTTCGGTTTCGAGGAATAAGAGACCAAGAGAGAAAGATGATCGGACTCCGGTGAATAATCTAGCTCGTCATAATAGTTCACCGGCCGGATTATTTTCATCCATTGATGTTGAAACAGCTTATGCAGCTGTAATGAAAAGTATGGGAGGTTTTGGAGGAAGTAATGTGATGAGTACAAGCAATACTGAAGCTTCGTCTCTTACTCCTAGAAGCAAGTTACTTCCTCCTACTTCTAGAGCGATGAGTCCGATCTCTGAGGTTGATGTTAAACCCGGTTTCTCGTCTAGATTGCCTCCTCGGACGCTTTCCGGTGGGTTTAATCGTTCTTTTGGGAATGAAGGGTCTGCTTCTTCCAAGCTTACAGCTCTTGCTAGGACCCAATCTGGAGGTCTAGATCAATACAAAACCAAGGATGAGGATTCAGCAAGTAGACGTCCTCCTTTGGCACATCACATGAGTTTGCCCAAGTCTTTATCAGATATTGAACAGTTACTGTCAGATTCTATCCCATGTAAGATCAGAGCCAAGCGGGGTTGTGCAACTCATCCTCGAAGCATAGCCGAGAGGGTGAGAAGAACCAAGATCAGTGAAAGAATGAGGAAGCTGCAAGACCTTGTTCCAAACATGGACACGCAAACAAACACAGCAGACATGTTGGATCTTGCGGTTCAATACATCAAGGACCTGCAAGAACAAGTGAAGGCGCTCGAAGAGAGTCGGGCAAGATGTAGATGCTCTAGTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

379

Amino Acids

41.72

Weight (kDa)

6.43

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	316 - 361	2.7e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	153
AatII	GACGTC	1 cut(s)	829
Acc36I	ACCTGC	1 cut(s)	1086
AccI	GTMKAC	1 cut(s)	823
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	2 cut(s)	922, 1058
AclI	AACGTT	1 cut(s)	213
AclWI	GGATC	1 cut(s)	1059
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	2 cut(s)	11, 300
AcuI	CTGAAG	2 cut(s)	393, 600
AcyI	GRCGYC	1 cut(s)	826
AfaI	GTAC	2 cut(s)	104, 568
AflIII	ACRYGT	1 cut(s)	1044
AgsI	TTSAA	3 cut(s)	506, 878, 1064
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AluBI	AGCT	7 cut(s)	458, 512, 521, 584, 751, 758, 997
AluI	AGCT	7 cut(s)	458, 512, 521, 584, 751, 758, 997
Alw26I	GTCTC	3 cut(s)	49, 409, 594
AlwI	GGATC	1 cut(s)	1059
AlwNI	CAGNNNCTG	1 cut(s)	886
Aor13HI	TCCGGA	1 cut(s)	268
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	2 cut(s)	518, 997
ApoI	RAATTY	2 cut(s)	11, 300
AspLEI	GCGC	1 cut(s)	1099
AspS9I	GGNCC	2 cut(s)	768, 1075
AsuC2I	CCSGG	1 cut(s)	666
AsuHPI	GGTGA	8 cut(s)	131, 221, 319, 359, 365, 457, 465, 973
AvaII	GGWCC	2 cut(s)	768, 1075
BbvI	GCAGC	2 cut(s)	530, 984
BccI	CCATC	3 cut(s)	242, 322, 344
BceAI	ACGGC	2 cut(s)	333, 339
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BcnI	CCSGG	1 cut(s)	666
BcoDI	GTCTC	3 cut(s)	49, 409, 594
BfaI	CTAG	7 cut(s)	455, 600, 627, 678, 765, 785, 1131
BfoI	RGCGCY	1 cut(s)	1100
BfuAI	ACCTGC	1 cut(s)	1086
BisI	GCNGC	2 cut(s)	519, 998
BlsI	GCNGC	2 cut(s)	520, 999
Bme1390I	CCNGG	1 cut(s)	666
Bme18I	GGWCC	2 cut(s)	768, 1075
BmgT120I	GGNCC	2 cut(s)	768, 1075
BmiI	GGNNCC	1 cut(s)	770
BmrFI	CCNGG	1 cut(s)	666
BmsI	GCATC	2 cut(s)	283, 1115
BpmI	CTGGAG	1 cut(s)	798
BpuMI	CCSGG	1 cut(s)	666
Bsa29I	ATCGAT	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	826
BsaI	GGTCTC	2 cut(s)	49, 409
BsaJI	CCNNGG	2 cut(s)	689, 801
BsaWI	WCCGGW	5 cut(s)	268, 304, 344, 442, 701
Bse118I	RCCGGY	1 cut(s)	475
BseAI	TCCGGA	1 cut(s)	268
BseCI	ATCGAT	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	689, 801
BseGI	GGATG	3 cut(s)	491, 811, 937
BseMII	CTCAG	5 cut(s)	81, 156, 246, 375, 639
BseRI	GAGGAG	1 cut(s)	678
BseX3I	CGGCCG	1 cut(s)	477
BseXI	GCAGC	2 cut(s)	530, 984
Bsh1285I	CGRYCG	1 cut(s)	480
BshFI	GGCC	1 cut(s)	479
BshVI	ATCGAT	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	480
BsiSI	CCGG	8 cut(s)	269, 305, 345, 443, 476, 480, 666, 702
BsmAI	GTCTC	3 cut(s)	49, 409, 594
BsmBI	CGTCTC	1 cut(s)	594
BsnI	GGCC	1 cut(s)	479
Bso31I	GGTCTC	2 cut(s)	49, 409
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	8 cut(s)	40, 142, 433, 642, 787, 909, 975, 1051
BspACI	CCGC	2 cut(s)	922, 1058
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	5 cut(s)	80, 157, 247, 374, 640
BspDI	ATCGAT	1 cut(s)	380
BspEI	TCCGGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	770
BspMI	ACCTGC	1 cut(s)	1086
BspPI	GGATC	1 cut(s)	1059
BspTNI	GGTCTC	2 cut(s)	49, 409
BsrFI	RCCGGY	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	689, 801
BssMI	GATC	8 cut(s)	40, 142, 433, 642, 787, 909, 975, 1051
BssNI	GRCGYC	1 cut(s)	826
BssT1I	CCWWGG	1 cut(s)	801
Bst4CI	ACNGT	3 cut(s)	245, 882, 888
Bst6I	CTCTTC	2 cut(s)	126, 1098
BstACI	GRCGYC	1 cut(s)	826
BstDEI	CTNAG	5 cut(s)	67, 165, 255, 361, 648
BstF5I	GGATG	3 cut(s)	491, 811, 937
BstH2I	RGCGCY	1 cut(s)	1100
BstHHI	GCGC	1 cut(s)	1099
BstKTI	GATC	8 cut(s)	43, 145, 436, 645, 790, 912, 978, 1054
BstMAI	GTCTC	3 cut(s)	49, 409, 594
BstMBI	GATC	8 cut(s)	40, 142, 433, 642, 787, 909, 975, 1051
BstMCI	CGRYCG	1 cut(s)	480
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNSI	RCATGY	1 cut(s)	1048
BstSCI	CCNGG	1 cut(s)	664
BstV1I	GCAGC	2 cut(s)	530, 984
BstX2I	RGATCY	1 cut(s)	1051
BstYI	RGATCY	1 cut(s)	1051
BstZI	CGGCCG	1 cut(s)	477
Bsu15I	ATCGAT	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	479
BsuTUI	ATCGAT	1 cut(s)	380
BtgZI	GCGATG	2 cut(s)	341, 647
BtsCI	GGATG	3 cut(s)	491, 811, 937
BtsIMutI	CAGTG	3 cut(s)	250, 369, 985
BveI	ACCTGC	1 cut(s)	1086
CaiI	CAGNNNCTG	1 cut(s)	886
CfoI	GCGC	1 cut(s)	1099
Cfr10I	RCCGGY	1 cut(s)	475
Cfr13I	GGNCC	2 cut(s)	768, 1075
ClaI	ATCGAT	1 cut(s)	380
CseI	GACGC	1 cut(s)	703
Csp6I	GTAC	2 cut(s)	103, 567
CviAII	CATG	4 cut(s)	847, 903, 1018, 1045
CviQI	GTAC	2 cut(s)	103, 567
DdeI	CTNAG	5 cut(s)	67, 165, 255, 361, 648
DpnI	GATC	8 cut(s)	42, 144, 435, 644, 789, 911, 977, 1053
DpnII	GATC	8 cut(s)	40, 142, 433, 642, 787, 909, 975, 1051
DrdI	GACNNNNNNGTC	1 cut(s)	153
DseDI	GACNNNNNNGTC	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	477
EagI	CGGCCG	1 cut(s)	477
Eam1104I	CTCTTC	2 cut(s)	126, 1098
EarI	CTCTTC	2 cut(s)	126, 1098
EclXI	CGGCCG	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	801
Eco31I	GGTCTC	2 cut(s)	49, 409
Eco47I	GGWCC	2 cut(s)	768, 1075
Eco52I	CGGCCG	1 cut(s)	477
Eco57I	CTGAAG	2 cut(s)	393, 600
EcoO109I	RGGNCCY	2 cut(s)	768, 1075
EcoRI	GAATTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	801
ErhI	CCWWGG	1 cut(s)	801
Esp3I	CGTCTC	1 cut(s)	594
FaeI	CATG	4 cut(s)	850, 906, 1021, 1048
FatI	CATG	4 cut(s)	846, 902, 1017, 1044
FauI	CCCGC	1 cut(s)	915
FblI	GTMKAC	1 cut(s)	823
Fnu4HI	GCNGC	2 cut(s)	519, 998
FokI	GGATG	3 cut(s)	478, 818, 924
Fsp4HI	GCNGC	2 cut(s)	519, 998
FspBI	CTAG	7 cut(s)	455, 600, 627, 678, 765, 785, 1131
GlaI	GCGC	1 cut(s)	1098
GluI	GCNGC	2 cut(s)	519, 998
GsuI	CTGGAG	1 cut(s)	798
HaeII	RGCGCY	1 cut(s)	1100
HaeIII	GGCC	1 cut(s)	479
HapII	CCGG	8 cut(s)	269, 305, 345, 443, 476, 480, 666, 702
HgaI	GACGC	1 cut(s)	703
HhaI	GCGC	1 cut(s)	1099
Hin1I	GRCGYC	1 cut(s)	826
Hin1II	CATG	4 cut(s)	850, 906, 1021, 1048
Hin6I	GCGC	1 cut(s)	1097
HinP1I	GCGC	1 cut(s)	1097
HindIII	AAGCTT	2 cut(s)	582, 749
HpaII	CCGG	8 cut(s)	269, 305, 345, 443, 476, 480, 666, 702
HphI	GGTGA	8 cut(s)	131, 221, 319, 359, 365, 457, 465, 973
Hpy166II	GTNNAC	2 cut(s)	473, 824
Hpy188I	TCNGA	8 cut(s)	10, 438, 642, 649, 693, 871, 892, 914
Hpy188III	TCNNGA	8 cut(s)	69, 158, 269, 371, 627, 678, 777, 785
Hpy8I	GTNNAC	2 cut(s)	473, 824
Hpy99I	CGWCG	2 cut(s)	319, 325
HpyAV	CCTTC	4 cut(s)	41, 236, 725, 1087
HpyCH4III	ACNGT	3 cut(s)	245, 882, 888
HpyCH4IV	ACGT	2 cut(s)	213, 826
HpyCH4V	TGCA	4 cut(s)	518, 932, 1000, 1081
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	5 cut(s)	67, 165, 255, 361, 648
HpySE526I	ACGT	2 cut(s)	213, 826
Hsp92I	GRCGYC	1 cut(s)	826
Hsp92II	CATG	4 cut(s)	850, 906, 1021, 1048
HspAI	GCGC	1 cut(s)	1097
Kpn2I	TCCGGA	1 cut(s)	268
Kzo9I	GATC	8 cut(s)	40, 142, 433, 642, 787, 909, 975, 1051
Lsp1109I	GCAGC	2 cut(s)	530, 984
LweI	GCATC	2 cut(s)	283, 1115
MaeI	CTAG	7 cut(s)	455, 600, 627, 678, 765, 785, 1131
MaeII	ACGT	2 cut(s)	213, 826
MaeIII	GTNAC	4 cut(s)	80, 307, 609, 882
MalI	GATC	8 cut(s)	42, 144, 435, 644, 789, 911, 977, 1053
MboI	GATC	8 cut(s)	40, 142, 433, 642, 787, 909, 975, 1051
MboII	GAAGA	6 cut(s)	143, 271, 302, 735, 978, 1115
MflI	RGATCY	1 cut(s)	1051
MluCI	AATT	2 cut(s)	11, 300
MlyI	GAGTC	3 cut(s)	433, 646, 1117
MmeI	TCCRAC	1 cut(s)	1029
MroI	TCCGGA	1 cut(s)	268
MseI	TTAA	4 cut(s)	240, 276, 660, 711
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	8 cut(s)	269, 305, 345, 443, 476, 480, 666, 702
MspR9I	CCNGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	1 cut(s)	518
NciI	CCSGG	1 cut(s)	666
NdeII	GATC	8 cut(s)	40, 142, 433, 642, 787, 909, 975, 1051
NlaIII	CATG	4 cut(s)	850, 906, 1021, 1048
NlaIV	GGNNCC	1 cut(s)	770
NmeAIII	GCCGAG	1 cut(s)	979
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	1048
PciI	ACATGT	1 cut(s)	1044
PcsI	WCGNNNNNNNCGW	2 cut(s)	107, 323
PfeI	GAWTC	7 cut(s)	5, 76, 122, 171, 367, 812, 893
PkrI	GCNGC	2 cut(s)	520, 999
PleI	GAGTC	3 cut(s)	433, 645, 1116
PpsI	GAGTC	3 cut(s)	433, 645, 1116
PpuMI	RGGWCCY	2 cut(s)	768, 1075
PscI	ACATGT	1 cut(s)	1044
Psp1406I	AACGTT	1 cut(s)	213
Psp5II	RGGWCCY	2 cut(s)	768, 1075
PspN4I	GGNNCC	1 cut(s)	770
PspPI	GGNCC	2 cut(s)	768, 1075
PspPPI	RGGWCCY	2 cut(s)	768, 1075
PstNI	CAGNNNCTG	1 cut(s)	886
PsuI	RGATCY	1 cut(s)	1051
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	2 cut(s)	104, 568
RsaNI	GTAC	2 cut(s)	103, 567
SaqAI	TTAA	4 cut(s)	240, 276, 660, 711
SatI	GCNGC	2 cut(s)	519, 998
Sau3AI	GATC	8 cut(s)	40, 142, 433, 642, 787, 909, 975, 1051
Sau96I	GGNCC	2 cut(s)	768, 1075
SchI	GAGTC	3 cut(s)	433, 646, 1117
ScrFI	CCNGG	1 cut(s)	666
SfaNI	GCATC	2 cut(s)	283, 1115
SinI	GGWCC	2 cut(s)	768, 1075
Sse9I	AATT	2 cut(s)	11, 300
SsiI	CCGC	2 cut(s)	922, 1058
SspMI	CTAG	7 cut(s)	455, 600, 627, 678, 765, 785, 1131
StyD4I	CCNGG	1 cut(s)	664
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	3 cut(s)	245, 882, 888
TaiI	ACGT	2 cut(s)	216, 829
TaqI	TCGA	7 cut(s)	110, 129, 145, 380, 404, 943, 1101
TasI	AATT	2 cut(s)	11, 300
TatI	WGTACW	1 cut(s)	566
TfiI	GAWTC	7 cut(s)	5, 76, 122, 171, 367, 812, 893
Tru1I	TTAA	4 cut(s)	240, 276, 660, 711
Tru9I	TTAA	4 cut(s)	240, 276, 660, 711
TscAI	CASTG	3 cut(s)	250, 369, 985
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	518, 997
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	480, 542, 744
TspRI	CASTG	3 cut(s)	250, 369, 985
VpaK11BI	GGWCC	2 cut(s)	768, 1075
XapI	RAATTY	2 cut(s)	11, 300
XbaI	TCTAGA	3 cut(s)	626, 677, 784
XceI	RCATGY	1 cut(s)	1048
XmiI	GTMKAC	1 cut(s)	823
XspI	CTAG	7 cut(s)	455, 600, 627, 678, 765, 785, 1131
ZraI	GACGTC	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.