Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Reverse (-)

1871476 .. 1873104

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGGGGAAGTCATTTGCCTCCTATGAAAACCGGTGGTGGTGTCGCGAATTCCAATCTCATTCGGCATAGTAGCTCACCTGCTGGATGGTTCTCCAATGTGAACATTGATGTGGCAGGCTATGCTGCATTGAGAGGAATGGGAAACTTCGGAGCACGTGATAGCACTAATGAAGAAGCATCTTTTTCTCCTGCAAGCAGGTTGAAAAATTTCTCTTCAGTTCCACCATCTACATCGGGGCTAATTAGTCCGATTTCTGAAATTGGGAACAAAAGAATGCGATCGAATAGTCAAGATGCTGGAGCTTTTGGGGATGGCCGCGGTAACAATTATGTGACTGGTTTCCCAATGGATTCATGGGATGACTCTGCAATTCTAGGTGATGATATCAGCGGTTCAACAGGCTTTAGGGATGACGATGTGAAAGCATACACTGGTTTAAGTCCATCCGAAACTCAGGATGTAGAGGCTGGAAGTCGCCCTCCTACACTTCTAGCTCATCACTTGAGCTTGCCAAAAACAGCCACTGAGATGGCTGCCATTGAAAAGTTTTTACAGCTCCAAGATTCTGTTCCTTGTAAGATTCGAGCAAAGCGGGGCTGTGCAACACACCCAAGAAGCATTGCTGAGAGGGTGAGAAGAACTCGAATTAGCGAACGAATGAGGAAACTGCAAGAGCTTGTACCGAACATGGACAAGCAAACAAACACTTCAGACATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTTAAAACTCAAGTCCAGACGCTCTCTGAAAATCGTGCCAAGTGTACCTGTTCAAACAAGCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

273

Amino Acids

29.51

Weight (kDa)

8.88

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	207 - 252	4.9e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
Acc36I	ACCTGC	2 cut(s)	88, 189
AccII	CGCG	2 cut(s)	47, 321
AciI	CCGC	4 cut(s)	319, 321, 393, 595
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	2 cut(s)	49, 208
AcuI	CTGAAG	2 cut(s)	201, 696
AcvI	CACGTG	1 cut(s)	158
AfaI	GTAC	3 cut(s)	684, 740, 796
AflIII	ACRYGT	1 cut(s)	717
AgeI	ACCGGT	1 cut(s)	32
AgsI	TTSAA	4 cut(s)	205, 399, 545, 804
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AluBI	AGCT	6 cut(s)	75, 305, 497, 510, 559, 679
AluI	AGCT	6 cut(s)	75, 305, 497, 510, 559, 679
Alw21I	GWGCWC	1 cut(s)	157
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	3 cut(s)	125, 536, 811
ApoI	RAATTY	2 cut(s)	49, 208
AsiGI	ACCGGT	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	209
AsuHPI	GGTGA	3 cut(s)	69, 392, 646
BbrPI	CACGTG	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	112, 523
BccI	CCATC	5 cut(s)	81, 235, 308, 454, 526
BfaI	CTAG	2 cut(s)	377, 494
BfuAI	ACCTGC	2 cut(s)	88, 189
BisI	GCNGC	4 cut(s)	126, 319, 537, 812
BlsI	GCNGC	4 cut(s)	127, 320, 538, 813
BmsI	GCATC	2 cut(s)	188, 286
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
BpmI	CTGGAG	1 cut(s)	321
BpuEI	CTTGAG	2 cut(s)	526, 744
BsaAI	YACGTR	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	32
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	343, 439
Bse3DI	GCAATG	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	6 cut(s)	92, 319, 367, 418, 446, 466
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	3 cut(s)	470, 519, 618
BseNI	ACTGG	2 cut(s)	343, 439
BseXI	GCAGC	2 cut(s)	112, 523
Bsh1236I	CGCG	2 cut(s)	47, 321
Bsh1285I	CGRYCG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	318
BshTI	ACCGGT	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	281
Bsp68I	TCGCGA	1 cut(s)	47
BspACI	CCGC	4 cut(s)	319, 321, 393, 595
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	3 cut(s)	469, 520, 619
BspFNI	CGCG	2 cut(s)	47, 321
BspMI	ACCTGC	2 cut(s)	88, 189
BsrDI	GCAATG	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	343, 439
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	158
BstC8I	GCNNGC	3 cut(s)	118, 196, 512
BstDEI	CTNAG	3 cut(s)	456, 528, 627
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	6 cut(s)	92, 319, 367, 418, 446, 466
BstFNI	CGCG	2 cut(s)	47, 321
BstKTI	GATC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	281
BstMCI	CGRYCG	1 cut(s)	284
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	721
BstUI	CGCG	2 cut(s)	47, 321
BstV1I	GCAGC	2 cut(s)	112, 523
BstXI	CCANNNNNNTGG	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	6 cut(s)	92, 319, 367, 418, 446, 466
BtsIMutI	CAGTG	2 cut(s)	432, 525
BtuMI	TCGCGA	1 cut(s)	47
BveI	ACCTGC	2 cut(s)	88, 189
Cac8I	GCNNGC	3 cut(s)	118, 196, 512
CaiI	CAGNNNCTG	1 cut(s)	527
Cfr10I	RCCGGY	1 cut(s)	32
Cfr42I	CCGCGG	1 cut(s)	322
CseI	GACGC	1 cut(s)	778
Csp6I	GTAC	3 cut(s)	683, 739, 795
CspAI	ACCGGT	1 cut(s)	32
CviAII	CATG	3 cut(s)	357, 691, 718
CviQI	GTAC	3 cut(s)	683, 739, 795
DdeI	CTNAG	3 cut(s)	456, 528, 627
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	388
Eco57I	CTGAAG	2 cut(s)	201, 696
Eco72I	CACGTG	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	388
FaeI	CATG	3 cut(s)	360, 694, 721
FaiI	YATR	8 cut(s)	26, 69, 123, 333, 358, 430, 692, 719
FatI	CATG	3 cut(s)	356, 690, 717
FauI	CCCGC	1 cut(s)	588
Fnu4HI	GCNGC	4 cut(s)	126, 319, 537, 812
FokI	GGATG	6 cut(s)	99, 326, 374, 425, 433, 473
Fsp4HI	GCNGC	4 cut(s)	126, 319, 537, 812
FspBI	CTAG	2 cut(s)	377, 494
GluI	GCNGC	4 cut(s)	126, 319, 537, 812
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	778
Hin1II	CATG	3 cut(s)	360, 694, 721
HinfI	GANTC	4 cut(s)	353, 365, 566, 583
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	3 cut(s)	69, 392, 646
Hpy166II	GTNNAC	2 cut(s)	103, 795
Hpy188I	TCNGA	6 cut(s)	152, 252, 259, 451, 715, 778
Hpy188III	TCNNGA	4 cut(s)	46, 293, 458, 766
Hpy8I	GTNNAC	2 cut(s)	103, 795
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	5 cut(s)	128, 194, 371, 605, 673
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	3 cut(s)	456, 528, 627
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	3 cut(s)	360, 694, 721
KspI	CCGCGG	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	281
LmnI	GCTCC	3 cut(s)	152, 302, 564
Lsp1109I	GCAGC	2 cut(s)	112, 523
LweI	GCATC	2 cut(s)	188, 286
MaeI	CTAG	2 cut(s)	377, 494
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	323, 334
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	3 cut(s)	185, 207, 651
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	7 cut(s)	49, 208, 243, 261, 328, 372, 648
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	6 cut(s)	30, 128, 460, 492, 624, 657
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	3 cut(s)	440, 744, 753
MslI	CAYNNNNRTG	2 cut(s)	110, 530
MspA1I	CMGCKG	2 cut(s)	321, 393
MspI	CCGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	282
MvnI	CGCG	2 cut(s)	47, 321
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	3 cut(s)	360, 694, 721
NmuCI	GTSAC	1 cut(s)	334
NruI	TCGCGA	1 cut(s)	47
NspI	RCATGY	1 cut(s)	721
PaqCI	CACCTGC	1 cut(s)	88
PciI	ACATGT	1 cut(s)	717
PctI	GAATGC	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	3 cut(s)	353, 566, 583
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	127, 320, 538, 813
Ple19I	CGATCG	1 cut(s)	284
PleI	GAGTC	1 cut(s)	359
PmaCI	CACGTG	1 cut(s)	158
PmlI	CACGTG	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	359
Ppu21I	YACGTR	1 cut(s)	158
PscI	ACATGT	1 cut(s)	717
PspCI	CACGTG	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	527
PvuI	CGATCG	1 cut(s)	284
RruI	TCGCGA	1 cut(s)	47
RsaI	GTAC	3 cut(s)	684, 740, 796
RsaNI	GTAC	3 cut(s)	683, 739, 795
RseI	CAYNNNNRTG	2 cut(s)	110, 530
SacII	CCGCGG	1 cut(s)	322
SaqAI	TTAA	3 cut(s)	440, 744, 753
SatI	GCNGC	4 cut(s)	126, 319, 537, 812
Sau3AI	GATC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	2 cut(s)	188, 286
Sfr303I	CCGCGG	1 cut(s)	322
SgrBI	CCGCGG	1 cut(s)	322
SmiMI	CAYNNNNRTG	2 cut(s)	110, 530
SmlI	CTYRAG	2 cut(s)	505, 759
SmoI	CTYRAG	2 cut(s)	505, 759
Sse9I	AATT	7 cut(s)	49, 208, 243, 261, 328, 372, 648
SsiI	CCGC	4 cut(s)	319, 321, 393, 595
SspMI	CTAG	2 cut(s)	377, 494
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	3 cut(s)	284, 586, 646
TasI	AATT	7 cut(s)	49, 208, 243, 261, 328, 372, 648
TatI	WGTACW	1 cut(s)	738
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	3 cut(s)	353, 566, 583
Tru1I	TTAA	3 cut(s)	440, 744, 753
Tru9I	TTAA	3 cut(s)	440, 744, 753
TscAI	CASTG	2 cut(s)	439, 532
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	3 cut(s)	125, 536, 811
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	41, 186, 345
TspRI	CASTG	2 cut(s)	439, 532
XapI	RAATTY	2 cut(s)	49, 208
XceI	RCATGY	1 cut(s)	721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	2 cut(s)	377, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.