Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Reverse (-)

6281716 .. 6285374

Gene Structure 3659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGAGTCAGATCTTCAGCAGCCACATCATAAAACCCAGCAGCATATGAACTCCAGCTTGTTGCGGTATCGATCAGCACCGAGTTCTTATTTCGCAAATGTTTTGGACACAGAATTCAATGAGCCTTTCTTCCGAGCCACTAGCCCCGAAACTGAGCGAATTTTAGCTCGATTCATGAGTAGTCAAGGTGGTGATGGTGGAGGAACAGAAGAAATTGTACCACATCAGAAAGTAGCAACAGATCAGCAACCACAGTTTTTGGTGCCTAAGGTGGACAATGAAGCAGCAATGATTCAACAACAACAACAGCAACAACAGCAGCAGCAGCAGCAGAGTCATATAAACAACTATACATCTCAGGGCTTTTACCAAATTCCATCTTCGAAACCGCCTTTGCCGAATCAGAATATGGCTTCATCTAATGAAGGAGCATCTGCTGCTGCTTATCCAATGGGGTCAAATCAGTTGCCTCCAATGAAAACTGGTGGTGTAACTCACTCGAATCTTATTAGGCATAGTAGCTCTCCTGCTGGACTTTTCGCCAATATCAATATTGATGTGGCAGGGTATGCTGCATTGAGAGGCATGGGAAATTTCGGAGTGAGTAATAGCACCAATGAAGAAGCATCATTTTCTCCTGCAAGCAGGTTGAAGAACTTCTCATCAGGGCCACCACCATCTACGTCCGGCATAATGAGTCCAATTTCCCAAATTGGGGAGAAAAGAATGCGATCGAATAATCAAGAACCCACCGGATCCGGAGGTCGCTTTAGTGAAGGTCATAGTAACAATTATGTCTCAGGTTTCCCCATTGGTTCATGGGAAGACTCTTCTCTTTTGGGGGATGATATCATTGGTTCAACTAGCTTTAGGGATGATGATGATGATGTGAAAACAATTACAGGTCTAAGTGCTTCAGAAACTCAGAATATGGAAGCAAGAAGTCGCCCTCTGTCTCATCACTTAAGCTTGCCAAAAACATCAGCAGAAATGGCTGCCATTGAAAATTTCTTGCAGTTTCAAGATTCTGTGCCTTGTAAGATTCGAGCAAAGCGGGGTTGTGCCACACATCCTCGAAGCATTGCTGAGAGGGTGAGAAGAACCCGAATCAGTGAAAGAATGAGGAAACTACAAGAGCTTGTACCTAACATGGACAAGCAAACCAACACTGCAGACATGTTAGATTTGGCTGTTGACTACATCAAAGACCTTCAAACTGAAGTCCAGACGCTGTCAGAAGCTCGTGTTAAGTGTACGTGTTCAAGCAAGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

425

Amino Acids

46.71

Weight (kDa)

6.28

Isoelectric Point (pI)

63.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	360 - 405	9.1e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	636
AccB1I	GGYRCC	1 cut(s)	262
AccIII	TCCGGA	1 cut(s)	758
AciI	CCGC	3 cut(s)	64, 389, 1054
AclWI	GGATC	2 cut(s)	750, 763
AcsI	RAATTY	5 cut(s)	113, 159, 372, 592, 1006
AcuI	CTGAAG	2 cut(s)	900, 1239
AfaI	GTAC	3 cut(s)	219, 1143, 1255
AfiI	CCNNNNNNNGG	2 cut(s)	714, 715
AflII	CTTAAG	1 cut(s)	964
AflIII	ACRYGT	2 cut(s)	1176, 1256
AgsI	TTSAA	8 cut(s)	118, 296, 652, 861, 1004, 1022, 1214, 1263
AluBI	AGCT	7 cut(s)	57, 167, 522, 867, 969, 1138, 1241
AluI	AGCT	7 cut(s)	57, 167, 522, 867, 969, 1138, 1241
Alw26I	GTCTC	2 cut(s)	802, 960
AlwI	GGATC	2 cut(s)	750, 763
AlwNI	CAGNNNCTG	1 cut(s)	1231
Aor13HI	TCCGGA	1 cut(s)	758
AoxI	GGCC	1 cut(s)	668
ApoI	RAATTY	5 cut(s)	113, 159, 372, 592, 1006
Asp700I	GAANNNNTTC	1 cut(s)	656
AspS9I	GGNCC	1 cut(s)	668
AsuHPI	GGTGA	2 cut(s)	203, 1105
AsuII	TTCGAA	1 cut(s)	383
AxyI	CCTNAGG	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	755
BanI	GGYRCC	1 cut(s)	262
BarI	GAAGNNNNNNTAC	2 cut(s)	201, 233
BauI	CACGAG	1 cut(s)	1242
BbsI	GAAGAC	1 cut(s)	831
BccI	CCATC	3 cut(s)	188, 385, 685
BcoDI	GTCTC	2 cut(s)	802, 960
BfaI	CTAG	2 cut(s)	141, 864
BfmI	CTRYAG	1 cut(s)	1170
BfrI	CTTAAG	1 cut(s)	964
BfuAI	ACCTGC	1 cut(s)	636
BglII	AGATCT	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	668
BmiI	GGNNCC	2 cut(s)	264, 757
BmsI	GCATC	2 cut(s)	440, 635
BpiI	GAAGAC	1 cut(s)	831
BpmI	CTGGAG	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	1257
BsaWI	WCCGGW	2 cut(s)	752, 758
Bsc4I	CCNNNNNNNGG	2 cut(s)	714, 715
Bse1I	ACTGG	1 cut(s)	487
Bse21I	CCTNAGG	1 cut(s)	267
Bse3DI	GCAATG	2 cut(s)	294, 1080
BseAI	TCCGGA	1 cut(s)	758
BseCI	ATCGAT	1 cut(s)	70
BseGI	GGATG	3 cut(s)	850, 880, 1069
BseLI	CCNNNNNNNGG	2 cut(s)	714, 715
BseMI	GCAATG	2 cut(s)	294, 1080
BseMII	CTCAG	5 cut(s)	144, 371, 813, 938, 1077
BseNI	ACTGG	1 cut(s)	487
BseYI	CCCAGC	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	734
BshFI	GGCC	1 cut(s)	670
BshNI	GGYRCC	1 cut(s)	262
BshVI	ATCGAT	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	734
BsiSI	CCGG	3 cut(s)	687, 753, 759
BslI	CCNNNNNNNGG	2 cut(s)	714, 715
BsmAI	GTCTC	2 cut(s)	802, 960
BsmI	GAATGC	1 cut(s)	732
BsnI	GGCC	1 cut(s)	670
Bsp119I	TTCGAA	1 cut(s)	383
Bsp13I	TCCGGA	1 cut(s)	758
Bsp143I	GATC	5 cut(s)	10, 71, 241, 731, 755
BspACI	CCGC	3 cut(s)	64, 389, 1054
BspANI	GGCC	1 cut(s)	670
BspCNI	CTCAG	5 cut(s)	145, 370, 812, 937, 1078
BspDI	ATCGAT	1 cut(s)	70
BspEI	TCCGGA	1 cut(s)	758
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	264, 757
BspMAI	CTGCAG	1 cut(s)	1174
BspMI	ACCTGC	1 cut(s)	636
BspPI	GGATC	2 cut(s)	750, 763
BspT104I	TTCGAA	1 cut(s)	383
BspT107I	GGYRCC	1 cut(s)	262
BspTI	CTTAAG	1 cut(s)	964
BsrDI	GCAATG	2 cut(s)	294, 1080
BsrI	ACTGG	1 cut(s)	487
BssMI	GATC	5 cut(s)	10, 71, 241, 731, 755
BssSI	CACGAG	1 cut(s)	1242
Bst2BI	CACGAG	1 cut(s)	1242
Bst4CI	ACNGT	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	835
BstAFI	CTTAAG	1 cut(s)	964
BstAPI	GCANNNNNTGC	2 cut(s)	437, 569
BstBAI	YACGTR	1 cut(s)	1257
BstBI	TTCGAA	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	643, 971, 1268
BstDEI	CTNAG	7 cut(s)	153, 267, 357, 799, 908, 924, 1086
BstF5I	GGATG	3 cut(s)	850, 880, 1069
BstKTI	GATC	5 cut(s)	13, 74, 244, 734, 758
BstMAI	GTCTC	2 cut(s)	802, 960
BstMBI	GATC	5 cut(s)	10, 71, 241, 731, 755
BstMCI	CGRYCG	1 cut(s)	734
BstMWI	GCNNNNNNNGC	6 cut(s)	316, 325, 328, 437, 569, 992
BstNSI	RCATGY	1 cut(s)	1180
BstSFI	CTRYAG	1 cut(s)	1170
BstV2I	GAAGAC	1 cut(s)	831
BstX2I	RGATCY	2 cut(s)	10, 755
BstYI	RGATCY	2 cut(s)	10, 755
Bsu15I	ATCGAT	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	670
BsuTUI	ATCGAT	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	850, 880, 1069
BtsI	GCAGTG	1 cut(s)	1167
BtsIMutI	CAGTG	2 cut(s)	1117, 1167
BveI	ACCTGC	1 cut(s)	636
Cac8I	GCNNGC	3 cut(s)	643, 971, 1268
CaiI	CAGNNNCTG	1 cut(s)	1231
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	668
ClaI	ATCGAT	1 cut(s)	70
CseI	GACGC	1 cut(s)	1237
Csp6I	GTAC	3 cut(s)	218, 1142, 1254
CspCI	CAANNNNNGTGG	2 cut(s)	240, 275
CviAII	CATG	5 cut(s)	175, 586, 819, 1150, 1177
CviQI	GTAC	3 cut(s)	218, 1142, 1254
DdeI	CTNAG	7 cut(s)	153, 267, 357, 799, 908, 924, 1086
DpnI	GATC	5 cut(s)	12, 73, 243, 733, 757
DpnII	GATC	5 cut(s)	10, 71, 241, 731, 755
Eam1104I	CTCTTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	835
Eco32I	GATATC	1 cut(s)	850
Eco57I	CTGAAG	2 cut(s)	900, 1239
Eco81I	CCTNAGG	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	850
FaeI	CATG	5 cut(s)	178, 589, 822, 1153, 1180
FatI	CATG	5 cut(s)	174, 585, 818, 1149, 1176
FauI	CCCGC	1 cut(s)	1047
FauNDI	CATATG	1 cut(s)	45
FokI	GGATG	3 cut(s)	857, 887, 1056
FspBI	CTAG	2 cut(s)	141, 864
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	670
HapII	CCGG	3 cut(s)	687, 753, 759
HgaI	GACGC	1 cut(s)	1237
Hin1II	CATG	5 cut(s)	178, 589, 822, 1153, 1180
HincII	GTYRAC	1 cut(s)	1195
HindII	GTYRAC	1 cut(s)	1195
HindIII	AAGCTT	1 cut(s)	967
HpaII	CCGG	3 cut(s)	687, 753, 759
HphI	GGTGA	2 cut(s)	203, 1105
Hpy166II	GTNNAC	3 cut(s)	274, 1195, 1254
Hpy188I	TCNGA	8 cut(s)	10, 134, 228, 405, 599, 919, 927, 1237
Hpy188III	TCNNGA	5 cut(s)	175, 743, 759, 1022, 1225
Hpy8I	GTNNAC	3 cut(s)	274, 1195, 1254
HpyAV	CCTTC	3 cut(s)	419, 770, 1220
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	2 cut(s)	683, 1256
HpyCH4V	TGCA	4 cut(s)	575, 641, 1015, 1172
HpyF10VI	GCNNNNNNNGC	6 cut(s)	316, 325, 328, 437, 569, 992
HpyF3I	CTNAG	7 cut(s)	153, 267, 357, 799, 908, 924, 1086
HpySE526I	ACGT	2 cut(s)	683, 1256
Hsp92II	CATG	5 cut(s)	178, 589, 822, 1153, 1180
Kpn2I	TCCGGA	1 cut(s)	758
Kzo9I	GATC	5 cut(s)	10, 71, 241, 731, 755
LmnI	GCTCC	1 cut(s)	428
LweI	GCATC	2 cut(s)	440, 635
MaeI	CTAG	2 cut(s)	141, 864
MaeII	ACGT	2 cut(s)	683, 1256
MaeIII	GTNAC	2 cut(s)	490, 785
MalI	GATC	5 cut(s)	12, 73, 243, 733, 757
MboI	GATC	5 cut(s)	10, 71, 241, 731, 755
MboII	GAAGA	9 cut(s)	5, 121, 221, 372, 632, 664, 822, 836, 1110
MflI	RGATCY	2 cut(s)	10, 755
MlyI	GAGTC	4 cut(s)	14, 343, 706, 821
MnlI	CCTC	8 cut(s)	194, 480, 575, 755, 960, 1083, 1083, 1116
MroI	TCCGGA	1 cut(s)	758
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	2 cut(s)	965, 1248
MspCI	CTTAAG	1 cut(s)	964
MspI	CCGG	3 cut(s)	687, 753, 759
Mva1269I	GAATGC	1 cut(s)	732
MwoI	GCNNNNNNNGC	6 cut(s)	316, 325, 328, 437, 569, 992
NdeI	CATATG	1 cut(s)	45
NdeII	GATC	5 cut(s)	10, 71, 241, 731, 755
NlaIII	CATG	5 cut(s)	178, 589, 822, 1153, 1180
NlaIV	GGNNCC	2 cut(s)	264, 757
NspI	RCATGY	1 cut(s)	1180
NspV	TTCGAA	1 cut(s)	383
PagI	TCATGA	1 cut(s)	174
PciI	ACATGT	1 cut(s)	1176
PctI	GAATGC	1 cut(s)	732
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	7 cut(s)	171, 292, 400, 502, 1025, 1042, 1107
PflFI	GACNNNGTC	1 cut(s)	1231
Ple19I	CGATCG	1 cut(s)	734
PleI	GAGTC	4 cut(s)	13, 342, 705, 821
PpsI	GAGTC	4 cut(s)	13, 342, 705, 821
Ppu21I	YACGTR	1 cut(s)	1257
PscI	ACATGT	1 cut(s)	1176
PspFI	CCCAGC	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	264, 757
PspPI	GGNCC	1 cut(s)	668
PstI	CTGCAG	1 cut(s)	1174
PstNI	CAGNNNCTG	1 cut(s)	1231
PsuI	RGATCY	2 cut(s)	10, 755
PsyI	GACNNNGTC	1 cut(s)	1231
PvuI	CGATCG	1 cut(s)	734
RsaI	GTAC	3 cut(s)	219, 1143, 1255
RsaNI	GTAC	3 cut(s)	218, 1142, 1254
SaqAI	TTAA	2 cut(s)	965, 1248
Sau3AI	GATC	5 cut(s)	10, 71, 241, 731, 755
Sau96I	GGNCC	1 cut(s)	668
SchI	GAGTC	4 cut(s)	14, 343, 706, 821
SfaNI	GCATC	2 cut(s)	440, 635
SfcI	CTRYAG	1 cut(s)	1170
SfuI	TTCGAA	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	964
SmoI	CTYRAG	1 cut(s)	964
SsiI	CCGC	3 cut(s)	64, 389, 1054
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	2 cut(s)	141, 864
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	2 cut(s)	686, 1259
TaqI	TCGA	7 cut(s)	70, 169, 383, 500, 734, 1045, 1075
TfiI	GAWTC	7 cut(s)	171, 292, 400, 502, 1025, 1042, 1107
Tru1I	TTAA	2 cut(s)	965, 1248
Tru9I	TTAA	2 cut(s)	965, 1248
TscAI	CASTG	2 cut(s)	1117, 1174
TspDTI	ATGAA	8 cut(s)	62, 163, 294, 405, 438, 491, 633, 807
TspRI	CASTG	2 cut(s)	1117, 1174
Tth111I	GACNNNGTC	1 cut(s)	1231
Vha464I	CTTAAG	1 cut(s)	964
XapI	RAATTY	5 cut(s)	113, 159, 372, 592, 1006
XceI	RCATGY	1 cut(s)	1180
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	2 cut(s)	141, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.