Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Reverse (-)

1782809 .. 1786746

Gene Structure 3938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G022200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAATCAGATCTTCAACAGCATCATCATAAACCCCAGCAGCATATGAACTCTAGCTTGATGCGGTACCGATCAGCTCCCAGCTCATATTTCGCAAATTTGGACTCAGATTTTTGTGAACCATTGTTCAATCGGCCTTCTAGCCCTGAAACTGAACGAATTTTCGCCCGGTTTTTGACTGGTGAAGGTGGTGGTAATGGTGATGGGGGAGGAGGAGGAACAGAAGAAACTGCATCACATCACAAAGTGACAACACAGACCAATAACCAGCAAACACAGTTTATGGTGCCTAAGGTGGATAATGAAGCAGTAGTGATTCAACAGCAGCAGCAGAGCCATTTGAACAACTATTCTTCTGTTTCTCAGGGCTTTTACCAAAGTCCATCTTCAAAACCACCTTTGCCAAATCAGAGTTTGAATTCAGCTAATGAAGGAGCTTATTCAATGGGGACAAGTCAGTTGCCTTCAGTGAAAACCGGTGGTGTCACTAATTCGAATCTTATTCGGCATAGTAGCTCGCCTGCTGGACTTTTCTCCCATATGAATATTGATGTGACAGGCTATGCTGCATTGAGAGGCATGGGAAACTACGGAGCCAGTAATAGCACTAATGAAGAAGCATCTTTTTCTTCTACAAGCAGGTTGAAAAATTTCTCTTCAGGGCCACCATCTACATCAGGGCTAATGAGTCCAATTGCTGAAATTGGGAACAAAAGAATGCGATCAGATAATCAAGATTCTAGAGGTTTTGGTGATGGCTCGGGTAACAATTATGTCACTGGTTTCCCAATTGATTCGTGGGATGACTCTGCAATGATGTCTGGTGATATTACTCGCTCAACAAGCTTTAGGGAAGATGATATCAAAGCATTTACTGGTTTAAGCCCATCAGAAACTCAGGATGTGGAGGCTGGAAATCGCCCTCCTACACTTCTGGCTCATCATTTGAGCTTGCCAAAAACATCAGCAGAGATGGCGGCCATTGAAAAGTTTATGCAGTTCCAAGATTCTGTGCCTTGTAAGATTCGAGCAAAGCGGGGTTGTGCCACACACCCAAGAAGCATTGCTGAGAGGGTAAGAAGAACTCGAATCAGTGAACGGATGAGGAAACTACAAGAGCTTGTACCTAACATGGACAAGCAAACAAACACTGCAGACATGTTAGATTTGGCTGTTGAGTACATTAAAGACCTTCAAACCCAAGTCCAGACACTCTCAGACAATCGTGCTAAGTGTACCTGTTCAAGCAAGCCGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

420

Amino Acids

45.81

Weight (kDa)

6.64

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	630
Acc65I	GGTACC	1 cut(s)	66
AccB1I	GGYRCC	2 cut(s)	66, 286
AciI	CCGC	4 cut(s)	64, 977, 1036, 1253
AcoI	YGGCCR	1 cut(s)	978
AcsI	RAATTY	4 cut(s)	97, 159, 418, 649
AcuI	CTGAAG	2 cut(s)	450, 642
AdeI	CACNNNGTG	1 cut(s)	247
AfaI	GTAC	4 cut(s)	68, 1125, 1181, 1237
AflIII	ACRYGT	1 cut(s)	1158
AgeI	ACCGGT	1 cut(s)	476
AluBI	AGCT	9 cut(s)	57, 77, 84, 425, 437, 516, 846, 951, 1120
AluI	AGCT	9 cut(s)	57, 77, 84, 425, 437, 516, 846, 951, 1120
Ama87I	CYCGRG	1 cut(s)	760
AoxI	GGCC	3 cut(s)	134, 662, 978
ApeKI	GCWGC	4 cut(s)	40, 325, 328, 566
ApoI	RAATTY	4 cut(s)	97, 159, 418, 649
AsiGI	ACCGGT	1 cut(s)	476
Asp700I	GAANNNNTTC	1 cut(s)	650
Asp718I	GGTACC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	662
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	4 cut(s)	194, 212, 764, 836
AsuII	TTCGAA	1 cut(s)	494
AvaI	CYCGRG	1 cut(s)	760
AxyI	CCTNAGG	1 cut(s)	291
BanI	GGYRCC	2 cut(s)	66, 286
BbvI	GCAGC	4 cut(s)	52, 337, 340, 553
BccI	CCATC	6 cut(s)	197, 391, 676, 749, 895, 967
BcnI	CCSGG	1 cut(s)	169
BfaI	CTAG	3 cut(s)	54, 141, 741
BfmI	CTRYAG	1 cut(s)	1152
BfuAI	ACCTGC	1 cut(s)	630
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	6 cut(s)	41, 326, 329, 567, 978, 1253
BlsI	GCNGC	6 cut(s)	42, 327, 330, 568, 979, 1254
Bme1390I	CCNGG	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	760
BmgT120I	GGNCC	1 cut(s)	662
BmiI	GGNNCC	3 cut(s)	68, 288, 595
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	4 cut(s)	31, 51, 242, 629
Bpu14I	TTCGAA	1 cut(s)	494
BpuMI	CCSGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	476
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	4 cut(s)	184, 597, 784, 880
Bse21I	CCTNAGG	1 cut(s)	291
Bse3DI	GCAATG	2 cut(s)	819, 1062
BseGI	GGATG	3 cut(s)	808, 907, 1107
BseMI	GCAATG	2 cut(s)	819, 1062
BseMII	CTCAG	5 cut(s)	120, 377, 911, 1059, 1230
BseNI	ACTGG	4 cut(s)	184, 597, 784, 880
BseRI	GAGGAG	2 cut(s)	225, 228
BseXI	GCAGC	4 cut(s)	52, 337, 340, 553
BseYI	CCCAGC	2 cut(s)	36, 80
BshFI	GGCC	3 cut(s)	136, 664, 980
BshNI	GGYRCC	2 cut(s)	66, 286
BshTI	ACCGGT	1 cut(s)	476
BsiHKCI	CYCGRG	1 cut(s)	760
BsiSI	CCGG	2 cut(s)	169, 477
BslFI	GGGAC	1 cut(s)	463
BsmFI	GGGAC	1 cut(s)	463
BsmI	GAATGC	1 cut(s)	723
BsnI	GGCC	3 cut(s)	136, 664, 980
BsoBI	CYCGRG	1 cut(s)	760
Bsp119I	TTCGAA	1 cut(s)	494
Bsp143I	GATC	3 cut(s)	10, 71, 722
BspACI	CCGC	4 cut(s)	64, 977, 1036, 1253
BspANI	GGCC	3 cut(s)	136, 664, 980
BspCNI	CTCAG	5 cut(s)	119, 376, 910, 1060, 1229
BspLI	GGNNCC	3 cut(s)	68, 288, 595
BspMAI	CTGCAG	1 cut(s)	1156
BspMI	ACCTGC	1 cut(s)	630
BspT104I	TTCGAA	1 cut(s)	494
BspT107I	GGYRCC	2 cut(s)	66, 286
BsrDI	GCAATG	2 cut(s)	819, 1062
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	4 cut(s)	184, 597, 784, 880
BssAI	RCCGGY	1 cut(s)	476
BssMI	GATC	3 cut(s)	10, 71, 722
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	661
BstBI	TTCGAA	1 cut(s)	494
BstC8I	GCNNGC	4 cut(s)	518, 522, 953, 1250
BstDEI	CTNAG	7 cut(s)	106, 291, 363, 897, 1068, 1216, 1230
BstF5I	GGATG	3 cut(s)	808, 907, 1107
BstKTI	GATC	3 cut(s)	13, 74, 725
BstMBI	GATC	3 cut(s)	10, 71, 722
BstMWI	GCNNNNNNNGC	2 cut(s)	843, 974
BstNSI	RCATGY	1 cut(s)	1162
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	1152
BstV1I	GCAGC	4 cut(s)	52, 337, 340, 553
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	291
BsuRI	GGCC	3 cut(s)	136, 664, 980
BtsCI	GGATG	3 cut(s)	808, 907, 1107
BtsI	GCAGTG	1 cut(s)	1149
BtsIMutI	CAGTG	4 cut(s)	474, 777, 1099, 1149
BveI	ACCTGC	1 cut(s)	630
Cac8I	GCNNGC	4 cut(s)	518, 522, 953, 1250
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	662
Csp6I	GTAC	4 cut(s)	67, 1124, 1180, 1236
CspAI	ACCGGT	1 cut(s)	476
CviAII	CATG	3 cut(s)	580, 1132, 1159
CviQI	GTAC	4 cut(s)	67, 1124, 1180, 1236
DdeI	CTNAG	7 cut(s)	106, 291, 363, 897, 1068, 1216, 1230
DpnI	GATC	3 cut(s)	12, 73, 724
DpnII	GATC	3 cut(s)	10, 71, 722
DraIII	CACNNNGTG	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	978
Eam1104I	CTCTTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	661
Eco32I	GATATC	1 cut(s)	862
Eco57I	CTGAAG	2 cut(s)	450, 642
Eco81I	CCTNAGG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	760
EcoRI	GAATTC	1 cut(s)	418
EcoRV	GATATC	1 cut(s)	862
FaeI	CATG	3 cut(s)	583, 1135, 1162
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	3 cut(s)	579, 1131, 1158
FauI	CCCGC	1 cut(s)	1029
FauNDI	CATATG	2 cut(s)	45, 540
Fnu4HI	GCNGC	6 cut(s)	41, 326, 329, 567, 978, 1253
FokI	GGATG	3 cut(s)	815, 914, 1114
Fsp4HI	GCNGC	6 cut(s)	41, 326, 329, 567, 978, 1253
FspBI	CTAG	3 cut(s)	54, 141, 741
GluI	GCNGC	6 cut(s)	41, 326, 329, 567, 978, 1253
GsaI	CCCAGC	2 cut(s)	40, 84
HaeIII	GGCC	3 cut(s)	136, 664, 980
HapII	CCGG	2 cut(s)	169, 477
Hin1II	CATG	3 cut(s)	583, 1135, 1162
HindIII	AAGCTT	1 cut(s)	844
HpaII	CCGG	2 cut(s)	169, 477
HphI	GGTGA	4 cut(s)	194, 212, 764, 836
Hpy166II	GTNNAC	3 cut(s)	119, 1097, 1236
Hpy188I	TCNGA	6 cut(s)	10, 109, 411, 727, 892, 1219
Hpy188III	TCNNGA	4 cut(s)	734, 741, 899, 1207
Hpy8I	GTNNAC	3 cut(s)	119, 1097, 1236
HpyAV	CCTTC	5 cut(s)	147, 179, 425, 474, 1202
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4V	TGCA	5 cut(s)	233, 569, 812, 997, 1154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	843, 974
HpyF3I	CTNAG	7 cut(s)	106, 291, 363, 897, 1068, 1216, 1230
Hsp92II	CATG	3 cut(s)	583, 1135, 1162
KpnI	GGTACC	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	10, 71, 722
LmnI	GCTCC	3 cut(s)	82, 434, 593
Lsp1109I	GCAGC	4 cut(s)	52, 337, 340, 553
LweI	GCATC	4 cut(s)	31, 51, 242, 629
MaeI	CTAG	3 cut(s)	54, 141, 741
MaeIII	GTNAC	5 cut(s)	247, 484, 553, 764, 775
MalI	GATC	3 cut(s)	12, 73, 724
MboI	GATC	3 cut(s)	10, 71, 722
MboII	GAAGA	9 cut(s)	5, 236, 345, 378, 621, 626, 648, 866, 1092
MfeI	CAATTG	2 cut(s)	693, 789
MflI	RGATCY	1 cut(s)	10
MluCI	AATT	9 cut(s)	97, 159, 418, 490, 649, 693, 702, 769, 789
MlyI	GAGTC	3 cut(s)	98, 697, 800
MnlI	CCTC	9 cut(s)	203, 206, 209, 569, 737, 901, 933, 1065, 1098
MroXI	GAANNNNTTC	1 cut(s)	650
MseI	TTAA	2 cut(s)	881, 1185
MspI	CCGG	2 cut(s)	169, 477
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	2 cut(s)	693, 789
Mva1269I	GAATGC	1 cut(s)	723
MwoI	GCNNNNNNNGC	2 cut(s)	843, 974
NciI	CCSGG	1 cut(s)	169
NdeI	CATATG	2 cut(s)	45, 540
NdeII	GATC	3 cut(s)	10, 71, 722
NlaIII	CATG	3 cut(s)	583, 1135, 1162
NlaIV	GGNNCC	3 cut(s)	68, 288, 595
NmuCI	GTSAC	4 cut(s)	247, 484, 553, 775
NspI	RCATGY	1 cut(s)	1162
NspV	TTCGAA	1 cut(s)	494
PciI	ACATGT	1 cut(s)	1158
PctI	GAATGC	1 cut(s)	723
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	8 cut(s)	5, 316, 496, 737, 794, 1007, 1024, 1089
PinAI	ACCGGT	1 cut(s)	476
PkrI	GCNGC	6 cut(s)	42, 327, 330, 568, 979, 1254
PleI	GAGTC	3 cut(s)	98, 696, 800
PpsI	GAGTC	3 cut(s)	98, 696, 800
PscI	ACATGT	1 cut(s)	1158
PspFI	CCCAGC	2 cut(s)	36, 80
PspN4I	GGNNCC	3 cut(s)	68, 288, 595
PspPI	GGNCC	1 cut(s)	662
PstI	CTGCAG	1 cut(s)	1156
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	4 cut(s)	68, 1125, 1181, 1237
RsaNI	GTAC	4 cut(s)	67, 1124, 1180, 1236
SaqAI	TTAA	2 cut(s)	881, 1185
SatI	GCNGC	6 cut(s)	41, 326, 329, 567, 978, 1253
Sau3AI	GATC	3 cut(s)	10, 71, 722
Sau96I	GGNCC	1 cut(s)	662
SchI	GAGTC	3 cut(s)	98, 697, 800
ScrFI	CCNGG	1 cut(s)	169
SfaNI	GCATC	4 cut(s)	31, 51, 242, 629
SfcI	CTRYAG	1 cut(s)	1152
SfuI	TTCGAA	1 cut(s)	494
Sse9I	AATT	9 cut(s)	97, 159, 418, 490, 649, 693, 702, 769, 789
SsiI	CCGC	4 cut(s)	64, 977, 1036, 1253
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	3 cut(s)	54, 141, 741
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	3 cut(s)	494, 1027, 1087
TasI	AATT	9 cut(s)	97, 159, 418, 490, 649, 693, 702, 769, 789
TatI	WGTACW	1 cut(s)	1179
TauI	GCSGC	2 cut(s)	980, 1255
TfiI	GAWTC	8 cut(s)	5, 316, 496, 737, 794, 1007, 1024, 1089
Tru1I	TTAA	2 cut(s)	881, 1185
Tru9I	TTAA	2 cut(s)	881, 1185
TscAI	CASTG	4 cut(s)	474, 784, 1099, 1156
TseFI	GTSAC	4 cut(s)	247, 484, 553, 775
TseI	GCWGC	4 cut(s)	40, 325, 328, 566
Tsp45I	GTSAC	4 cut(s)	247, 484, 553, 775
TspDTI	ATGAA	5 cut(s)	62, 318, 444, 557, 627
TspGWI	ACGGA	2 cut(s)	606, 1114
TspRI	CASTG	4 cut(s)	474, 784, 1099, 1156
XapI	RAATTY	4 cut(s)	97, 159, 418, 649
XbaI	TCTAGA	1 cut(s)	740
XceI	RCATGY	1 cut(s)	1162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	795
XmnI	GAANNNNTTC	1 cut(s)	650
XspI	CTAG	3 cut(s)	54, 141, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.