Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014745.1

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Reverse (-)

10276 .. 12098

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014745.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atgagtagtcaaggtggtgatggtggaggaacagaagaaattgtaccacatcagaaaatagtaacagatcagcaaccacaatttttggtgcctaaggtggataacgaagcagcaatgattcaacaacaacaacaacagcagcagcagcaggagcaacagcaacaacagcagcagcagagtcatataaacaactatacatctcagggcttttaccaaattccatcttcgaaaccgcctttgccgaatcagaatatggcttcatctagtgaaggagcatctgctgctgcttatccaatggggtcaaatcagttgcctccaatgaaaactggtggtgtaactcactcgaatcttgttaggcatagtagctctcctgctggacttttcgccaatatcaatattgatgtggcagggtatgctgcattgagaggcatgggaaatttcggagtgagtaatagcaccaatgaagaagcatcattttctcctgcaagcaggttgaagaacttctcatcagggccaccaccatctacgtccggcataatgagtccaatttcccaaattggggagaaaagaatgcgatcgaataatcaagaacccaccggatccggaggtcggtttagtgaaggtcatagtaacaattatgtctcaagtttccccattggttcatgggaagactcttctcttttggcggatgatatcattggttcaactagctttagggatgatgatgatgatgtgaaaacaattactggtctaagtgcttcagaaactcagaatatggaagcaagaagtcgccctctggctcatcacttaagcttgccaaaaacatcagcagaaatggctgccattgaaaatttcttgcagtttcaagattctgtgccttgtaagattcgagcaaagcggggttgtgccacacatcctcgaagcattgctgagagggtgagaagaacccgaatcagtgaaagaatgaggaaactacaagagcttgtaccgaacatggacaagcaaaccaacactgcagacatgttagatttggctgttgactacatcaaagaccttcaaactgaagtccagacgctgtcagaagctcgtgctaagtgtacgtgttcaatcaagcagcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

373

Amino Acids

40.66

Weight (kDa)

6.09

Isoelectric Point (pI)

63.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	480
AccB1I	GGYRCC	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	602
AciI	CCGC	3 cut(s)	233, 686, 898
AclWI	GGATC	2 cut(s)	594, 607
AcsI	RAATTY	3 cut(s)	216, 436, 850
AcuI	CTGAAG	2 cut(s)	744, 1083
AfaI	GTAC	3 cut(s)	45, 987, 1099
AfiI	CCNNNNNNNGG	3 cut(s)	558, 559, 609
AflII	CTTAAG	1 cut(s)	808
AflIII	ACRYGT	2 cut(s)	1020, 1100
AgsI	TTSAA	7 cut(s)	122, 496, 705, 848, 866, 1058, 1107
AluBI	AGCT	5 cut(s)	366, 711, 813, 982, 1085
AluI	AGCT	5 cut(s)	366, 711, 813, 982, 1085
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	2 cut(s)	594, 607
AlwNI	CAGNNNCTG	1 cut(s)	1075
Aor13HI	TCCGGA	1 cut(s)	602
AoxI	GGCC	1 cut(s)	512
ApoI	RAATTY	3 cut(s)	216, 436, 850
Asp700I	GAANNNNTTC	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	2 cut(s)	29, 949
AsuII	TTCGAA	1 cut(s)	227
AxyI	CCTNAGG	1 cut(s)	93
BamHI	GGATCC	1 cut(s)	599
BanI	GGYRCC	1 cut(s)	88
BarI	GAAGNNNNNNTAC	2 cut(s)	27, 59
BauI	CACGAG	1 cut(s)	1086
BbsI	GAAGAC	1 cut(s)	675
BccI	CCATC	3 cut(s)	14, 229, 529
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	2 cut(s)	264, 708
BfmI	CTRYAG	1 cut(s)	1014
BfrI	CTTAAG	1 cut(s)	808
BfuAI	ACCTGC	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	2 cut(s)	90, 601
BmsI	GCATC	2 cut(s)	284, 479
BpiI	GAAGAC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	628
BsaAI	YACGTR	1 cut(s)	1101
BsaWI	WCCGGW	2 cut(s)	596, 602
Bsc4I	CCNNNNNNNGG	3 cut(s)	558, 559, 609
Bse1I	ACTGG	2 cut(s)	331, 751
Bse21I	CCTNAGG	1 cut(s)	93
Bse3DI	GCAATG	2 cut(s)	120, 924
BseAI	TCCGGA	1 cut(s)	602
BseGI	GGATG	3 cut(s)	694, 724, 913
BseLI	CCNNNNNNNGG	3 cut(s)	558, 559, 609
BseMI	GCAATG	2 cut(s)	120, 924
BseMII	CTCAG	3 cut(s)	215, 782, 921
BseNI	ACTGG	2 cut(s)	331, 751
Bsh1285I	CGRYCG	1 cut(s)	578
BshFI	GGCC	1 cut(s)	514
BshNI	GGYRCC	1 cut(s)	88
BsiEI	CGRYCG	1 cut(s)	578
BsiSI	CCGG	3 cut(s)	531, 597, 603
BslI	CCNNNNNNNGG	3 cut(s)	558, 559, 609
BsmAI	GTCTC	1 cut(s)	646
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	1 cut(s)	514
Bsp119I	TTCGAA	1 cut(s)	227
Bsp13I	TCCGGA	1 cut(s)	602
Bsp143I	GATC	3 cut(s)	67, 575, 599
BspACI	CCGC	3 cut(s)	233, 686, 898
BspANI	GGCC	1 cut(s)	514
BspCNI	CTCAG	3 cut(s)	214, 781, 922
BspEI	TCCGGA	1 cut(s)	602
BspLI	GGNNCC	2 cut(s)	90, 601
BspMAI	CTGCAG	1 cut(s)	1018
BspMI	ACCTGC	1 cut(s)	480
BspPI	GGATC	2 cut(s)	594, 607
BspT104I	TTCGAA	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	88
BspTI	CTTAAG	1 cut(s)	808
BsrDI	GCAATG	2 cut(s)	120, 924
BsrI	ACTGG	2 cut(s)	331, 751
BssMI	GATC	3 cut(s)	67, 575, 599
BssSI	CACGAG	1 cut(s)	1086
Bst2BI	CACGAG	1 cut(s)	1086
Bst6I	CTCTTC	1 cut(s)	679
BstAFI	CTTAAG	1 cut(s)	808
BstAPI	GCANNNNNTGC	2 cut(s)	281, 413
BstBAI	YACGTR	1 cut(s)	1101
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	487, 815
BstDEI	CTNAG	6 cut(s)	93, 201, 752, 768, 930, 1092
BstF5I	GGATG	3 cut(s)	694, 724, 913
BstKTI	GATC	3 cut(s)	70, 578, 602
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	3 cut(s)	67, 575, 599
BstMCI	CGRYCG	1 cut(s)	578
BstMWI	GCNNNNNNNGC	6 cut(s)	145, 151, 166, 281, 413, 836
BstNSI	RCATGY	1 cut(s)	1024
BstSFI	CTRYAG	1 cut(s)	1014
BstV2I	GAAGAC	1 cut(s)	675
BstX2I	RGATCY	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	599
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	514
BtsCI	GGATG	3 cut(s)	694, 724, 913
BtsI	GCAGTG	1 cut(s)	1011
BtsIMutI	CAGTG	2 cut(s)	961, 1011
BveI	ACCTGC	1 cut(s)	480
Cac8I	GCNNGC	2 cut(s)	487, 815
CaiI	CAGNNNCTG	1 cut(s)	1075
Cfr13I	GGNCC	1 cut(s)	512
CseI	GACGC	1 cut(s)	1081
Csp6I	GTAC	3 cut(s)	44, 986, 1098
CspCI	CAANNNNNGTGG	2 cut(s)	66, 101
CviAII	CATG	4 cut(s)	430, 663, 994, 1021
CviQI	GTAC	3 cut(s)	44, 986, 1098
DdeI	CTNAG	6 cut(s)	93, 201, 752, 768, 930, 1092
DpnI	GATC	3 cut(s)	69, 577, 601
DpnII	GATC	3 cut(s)	67, 575, 599
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
EciI	GGCGGA	1 cut(s)	701
Eco32I	GATATC	1 cut(s)	694
Eco57I	CTGAAG	2 cut(s)	744, 1083
Eco81I	CCTNAGG	1 cut(s)	93
EcoRV	GATATC	1 cut(s)	694
FaeI	CATG	4 cut(s)	433, 666, 997, 1024
FatI	CATG	4 cut(s)	429, 662, 993, 1020
FauI	CCCGC	1 cut(s)	891
FokI	GGATG	3 cut(s)	701, 731, 900
FspBI	CTAG	2 cut(s)	264, 708
HaeIII	GGCC	1 cut(s)	514
HapII	CCGG	3 cut(s)	531, 597, 603
HgaI	GACGC	1 cut(s)	1081
Hin1II	CATG	4 cut(s)	433, 666, 997, 1024
HincII	GTYRAC	1 cut(s)	1039
HindII	GTYRAC	1 cut(s)	1039
HindIII	AAGCTT	1 cut(s)	811
HinfI	GANTC	9 cut(s)	118, 178, 244, 346, 541, 671, 869, 886, 951
HpaII	CCGG	3 cut(s)	531, 597, 603
HphI	GGTGA	2 cut(s)	29, 949
Hpy166II	GTNNAC	2 cut(s)	1039, 1098
Hpy188I	TCNGA	6 cut(s)	54, 249, 443, 763, 771, 1081
Hpy188III	TCNNGA	4 cut(s)	587, 603, 866, 1069
Hpy8I	GTNNAC	2 cut(s)	1039, 1098
HpyAV	CCTTC	3 cut(s)	263, 614, 1064
HpyCH4IV	ACGT	2 cut(s)	527, 1100
HpyCH4V	TGCA	4 cut(s)	419, 485, 859, 1016
HpyF10VI	GCNNNNNNNGC	6 cut(s)	145, 151, 166, 281, 413, 836
HpyF3I	CTNAG	6 cut(s)	93, 201, 752, 768, 930, 1092
HpySE526I	ACGT	2 cut(s)	527, 1100
Hsp92II	CATG	4 cut(s)	433, 666, 997, 1024
Kpn2I	TCCGGA	1 cut(s)	602
Kzo9I	GATC	3 cut(s)	67, 575, 599
LmnI	GCTCC	2 cut(s)	151, 272
LweI	GCATC	2 cut(s)	284, 479
MaeI	CTAG	2 cut(s)	264, 708
MaeII	ACGT	2 cut(s)	527, 1100
MaeIII	GTNAC	3 cut(s)	61, 334, 629
MalI	GATC	3 cut(s)	69, 577, 601
MboI	GATC	3 cut(s)	67, 575, 599
MboII	GAAGA	7 cut(s)	47, 216, 476, 508, 666, 680, 954
MflI	RGATCY	1 cut(s)	599
MluCI	AATT	9 cut(s)	39, 80, 216, 436, 546, 555, 634, 741, 850
MlyI	GAGTC	3 cut(s)	187, 550, 665
MnlI	CCTC	8 cut(s)	20, 324, 419, 599, 804, 927, 927, 960
MroI	TCCGGA	1 cut(s)	602
MroXI	GAANNNNTTC	1 cut(s)	500
MseI	TTAA	1 cut(s)	809
MspCI	CTTAAG	1 cut(s)	808
MspI	CCGG	3 cut(s)	531, 597, 603
Mva1269I	GAATGC	1 cut(s)	576
MwoI	GCNNNNNNNGC	6 cut(s)	145, 151, 166, 281, 413, 836
NdeII	GATC	3 cut(s)	67, 575, 599
NlaIII	CATG	4 cut(s)	433, 666, 997, 1024
NlaIV	GGNNCC	2 cut(s)	90, 601
NspI	RCATGY	1 cut(s)	1024
NspV	TTCGAA	1 cut(s)	227
PciI	ACATGT	1 cut(s)	1020
PctI	GAATGC	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	6 cut(s)	118, 244, 346, 869, 886, 951
PflFI	GACNNNGTC	1 cut(s)	1075
Ple19I	CGATCG	1 cut(s)	578
PleI	GAGTC	3 cut(s)	186, 549, 665
PpsI	GAGTC	3 cut(s)	186, 549, 665
Ppu21I	YACGTR	1 cut(s)	1101
PscI	ACATGT	1 cut(s)	1020
PspN4I	GGNNCC	2 cut(s)	90, 601
PspPI	GGNCC	1 cut(s)	512
PstI	CTGCAG	1 cut(s)	1018
PstNI	CAGNNNCTG	1 cut(s)	1075
PsuI	RGATCY	1 cut(s)	599
PsyI	GACNNNGTC	1 cut(s)	1075
PvuI	CGATCG	1 cut(s)	578
RsaI	GTAC	3 cut(s)	45, 987, 1099
RsaNI	GTAC	3 cut(s)	44, 986, 1098
SaqAI	TTAA	1 cut(s)	809
Sau3AI	GATC	3 cut(s)	67, 575, 599
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	3 cut(s)	187, 550, 665
SfaNI	GCATC	2 cut(s)	284, 479
SfcI	CTRYAG	1 cut(s)	1014
SfuI	TTCGAA	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	643, 808
SmoI	CTYRAG	2 cut(s)	643, 808
Sse9I	AATT	9 cut(s)	39, 80, 216, 436, 546, 555, 634, 741, 850
SsiI	CCGC	3 cut(s)	233, 686, 898
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	2 cut(s)	264, 708
TaiI	ACGT	2 cut(s)	530, 1103
TaqI	TCGA	5 cut(s)	227, 344, 578, 889, 919
TasI	AATT	9 cut(s)	39, 80, 216, 436, 546, 555, 634, 741, 850
TfiI	GAWTC	6 cut(s)	118, 244, 346, 869, 886, 951
Tru1I	TTAA	1 cut(s)	809
Tru9I	TTAA	1 cut(s)	809
TscAI	CASTG	2 cut(s)	961, 1018
TspDTI	ATGAA	4 cut(s)	249, 335, 477, 651
TspRI	CASTG	2 cut(s)	961, 1018
Tth111I	GACNNNGTC	1 cut(s)	1075
Vha464I	CTTAAG	1 cut(s)	808
XapI	RAATTY	3 cut(s)	216, 436, 850
XceI	RCATGY	1 cut(s)	1024
XmnI	GAANNNNTTC	1 cut(s)	500
XspI	CTAG	2 cut(s)	264, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.