Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014745.1

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Reverse (-)

12118 .. 12474

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014745.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atggagtcagatcttcagcagccacatcataaaacccagcagcatatgaactccagcttgttgcggtatcgatcagcaccgagttcttatttcgcaaatgttttggacacagaattcaatgagcccttcttcaaccgagccactagccccgaaactgagcgaattttagctcgatttatgagtagtcaaggtggtgatggtggaggaacagaagaaattgtaccacatcagaaagtagtaacagatcagcaaccacaatttttggtgcctaaggtggataacgaagcagcaatgattcaacaacaacaacaacagcagcagcagcaggagcagcagcagcaacagcagcagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

118

Amino Acids

13.61

Weight (kDa)

5.02

Isoelectric Point (pI)

89.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	265
AciI	CCGC	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	113, 162
AfaI	GTAC	1 cut(s)	222
AgsI	TTSAA	3 cut(s)	118, 133, 299
AluBI	AGCT	2 cut(s)	57, 170
AluI	AGCT	2 cut(s)	57, 170
ApoI	RAATTY	2 cut(s)	113, 162
AsuHPI	GGTGA	1 cut(s)	206
AxyI	CCTNAGG	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	126
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BbvI	GCAGC	9 cut(s)	31, 52, 299, 328, 331, 334, 343, 346, 349
BccI	CCATC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	144
BglII	AGATCT	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	37
Bsa29I	ATCGAT	1 cut(s)	70
Bse21I	CCTNAGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	297
BseCI	ATCGAT	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	147
BseXI	GCAGC	9 cut(s)	31, 52, 299, 328, 331, 334, 343, 346, 349
BseYI	CCCAGC	1 cut(s)	36
BshNI	GGYRCC	1 cut(s)	265
BshVI	ATCGAT	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	10, 71, 244
BspACI	CCGC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	297
BssMI	GATC	3 cut(s)	10, 71, 244
BstDEI	CTNAG	2 cut(s)	156, 270
BstKTI	GATC	3 cut(s)	13, 74, 247
BstMBI	GATC	3 cut(s)	10, 71, 244
BstMWI	GCNNNNNNNGC	6 cut(s)	322, 328, 331, 337, 343, 346
BstV1I	GCAGC	9 cut(s)	31, 52, 299, 328, 331, 334, 343, 346, 349
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
Bsu15I	ATCGAT	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	270
BsuTUI	ATCGAT	1 cut(s)	70
ClaI	ATCGAT	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	221
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviJI	RGCY	6 cut(s)	22, 57, 124, 140, 147, 170
CviKI_1	RGCY	6 cut(s)	22, 57, 124, 140, 147, 170
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	156, 270
DpnI	GATC	3 cut(s)	12, 73, 246
DpnII	GATC	3 cut(s)	10, 71, 244
Eco24I	GRGCYC	1 cut(s)	126
Eco81I	CCTNAGG	1 cut(s)	270
EcoRI	GAATTC	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	126
FaiI	YATR	4 cut(s)	30, 45, 47, 179
FauNDI	CATATG	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	144
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	37
HinfI	GANTC	2 cut(s)	5, 295
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	10, 231
HpyAV	CCTTC	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	6 cut(s)	322, 328, 331, 337, 343, 346
HpyF3I	CTNAG	2 cut(s)	156, 270
Kzo9I	GATC	3 cut(s)	10, 71, 244
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	3 cut(s)	50, 67, 311
Lsp1109I	GCAGC	9 cut(s)	31, 52, 299, 328, 331, 334, 343, 346, 349
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	3 cut(s)	12, 73, 246
MboI	GATC	3 cut(s)	10, 71, 244
MboII	GAAGA	3 cut(s)	5, 121, 224
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	4 cut(s)	113, 162, 216, 257
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	1 cut(s)	197
MwoI	GCNNNNNNNGC	6 cut(s)	322, 328, 331, 337, 343, 346
NdeI	CATATG	1 cut(s)	45
NdeII	GATC	3 cut(s)	10, 71, 244
NlaIV	GGNNCC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
Sau3AI	GATC	3 cut(s)	10, 71, 244
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	4 cut(s)	59, 172, 193, 276
Sse9I	AATT	4 cut(s)	113, 162, 216, 257
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	144
TaqI	TCGA	2 cut(s)	70, 172
TasI	AATT	4 cut(s)	113, 162, 216, 257
TfiI	GAWTC	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	62
XapI	RAATTY	2 cut(s)	113, 162
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.