Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Reverse (-)

62750577 .. 62752721

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0453900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCTTTCTCCAATGTTGAGTCTAACCAGTTGGATGGTGGCCTTAACAATGCTCTGTCTGAACCAGCAATCTTGTTTTTGCCTAGACTGGTTAGAGAGCTTGATGCTGCAGCAGTCAAAATTCAAAAGGTTTACAAGAGTTATCGAACTCGAAGAAACCTTGCAGATTGTGCAGTGGCGGCTGAGGAGCTATGGTGGAAAACTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTTCAGAAACCGCCGTTTCGCGGTGGGCAAGGGCTAGCTAGGACTAGAGCTGCTAAGATTGGAAAAGGTTTGTCTAAGGATGAGAAAGCACAAATGTTAGCGCTTCAACATTGGCTTGAAGCTATTGATCCATGCCACCGCTATGGACACAATTTACATTTCTATTATGATTTGTGGTTTGAAAGTGAGAGCAGTCAGCCTTTCTTCTACTGGCTGGATGTTGGAGATGGCAAAGAAATAAATCTCGAGAGATGCTCGAGGACAGCTCTACAGCACCAATGCATCGAGTACCTTGGACCGAAAGAAAGGAAATCCCATGAAGTATTAGTGGAAAATGGCAAGCTAATGTATAAGCAAAGTGGGATGCTTGTGAATAGTAGTGAAGGTTCCAAATCGATATTCGTGCTAAGCACAACAAGGGCTTTGTATGTTGGTCAGAAGAAGGGTCAGTTTGACCATTTGAGTTTTCTATCTGGAGGTGCTACCACAGCAGCTGGAAGATTGGTTGCCCATGATGGGGTTCTTGAGGCCATTTGGCCATACAGTGATCATTACGGGTGTGCAATTGATGATGACTATCCTTCAATGAAGAAAACTGAAGGGGAACTAACAAAGCAAAACTCATTTAAGTCGACCCAATCGGATGGCGCAAACACATCAAATGTCGATGACTTGACCGAGAAGGCACCGATCCCCGCCGTTCGTTCGGAAGTTAATGATGGCAGTGCAAACCACCAATGTTCACCATGGGCATGCCCTTGCCTTGTCTACTGGAACTGGAGCCCGAATCGGGTGTTTGCGAGACTACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

348

Amino Acids

38.92

Weight (kDa)

7.13

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	919
AccI	GTMKAC	2 cut(s)	866, 1002
AccII	CGCG	1 cut(s)	255
AciI	CCGC	5 cut(s)	179, 245, 255, 373, 930
AclWI	GGATC	2 cut(s)	356, 919
AcoI	YGGCCR	1 cut(s)	770
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	852
AfaI	GTAC	1 cut(s)	524
AfeI	AGCGCT	1 cut(s)	336
AfiI	CCNNNNNNNGG	4 cut(s)	254, 750, 751, 1024
AgsI	TTSAA	5 cut(s)	125, 341, 353, 416, 819
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	9 cut(s)	100, 190, 218, 272, 284, 356, 500, 577, 728
AluI	AGCT	9 cut(s)	100, 190, 218, 272, 284, 356, 500, 577, 728
Alw26I	GTCTC	1 cut(s)	1030
AlwI	GGATC	2 cut(s)	356, 919
AlwNI	CAGNNNCTG	1 cut(s)	728
Ama87I	CYCGRG	2 cut(s)	479, 490
Aor51HI	AGCGCT	1 cut(s)	336
AoxI	GGCC	3 cut(s)	40, 762, 770
ApeKI	GCWGC	5 cut(s)	107, 110, 215, 284, 725
ApoI	RAATTY	1 cut(s)	120
AspLEI	GCGC	2 cut(s)	337, 884
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	969
AsuNHI	GCTAGC	1 cut(s)	268
AvaI	CYCGRG	2 cut(s)	479, 490
AvaII	GGWCC	1 cut(s)	530
BalI	TGGCCA	1 cut(s)	772
BanI	GGYRCC	1 cut(s)	919
BanII	GRGCYC	1 cut(s)	1019
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	5 cut(s)	94, 122, 227, 271, 737
BccI	CCATC	5 cut(s)	29, 455, 743, 872, 947
BceAI	ACGGC	2 cut(s)	232, 917
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BclI	TGATCA	1 cut(s)	781
BcoDI	GTCTC	1 cut(s)	1030
BfaI	CTAG	5 cut(s)	84, 269, 273, 279, 1045
BfmI	CTRYAG	3 cut(s)	108, 213, 503
BfoI	RGCGCY	1 cut(s)	338
BisI	GCNGC	6 cut(s)	108, 111, 180, 216, 285, 726
BlpI	GCTNAGC	1 cut(s)	641
BlsI	GCNGC	6 cut(s)	109, 112, 181, 217, 286, 727
Bme18I	GGWCC	1 cut(s)	530
BmeT110I	CYCGRG	2 cut(s)	479, 490
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	3 cut(s)	622, 921, 1016
BmsI	GCATC	4 cut(s)	94, 476, 525, 588
BmtI	GCTAGC	1 cut(s)	272
BplI	GAGNNNNNCTC	4 cut(s)	473, 505, 484, 516
BpmI	CTGGAG	2 cut(s)	729, 1033
Bpu10I	CCTNAGC	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	641
BpuEI	CTTGAG	2 cut(s)	206, 779
Bsa29I	ATCGAT	1 cut(s)	629
BsaBI	GATNNNNATC	1 cut(s)	810
BsaJI	CCNNGG	2 cut(s)	526, 980
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	4 cut(s)	254, 750, 751, 1024
Bse1I	ACTGG	5 cut(s)	28, 93, 449, 1010, 1016
Bse8I	GATNNNNATC	1 cut(s)	810
BseCI	ATCGAT	1 cut(s)	629
BseDI	CCNNGG	2 cut(s)	526, 980
BseGI	GGATG	5 cut(s)	40, 319, 457, 603, 883
BseJI	GATNNNNATC	1 cut(s)	810
BseLI	CCNNNNNNNGG	4 cut(s)	254, 750, 751, 1024
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	5 cut(s)	28, 93, 449, 1010, 1016
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	5 cut(s)	94, 122, 227, 271, 737
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	3 cut(s)	42, 764, 772
BshNI	GGYRCC	1 cut(s)	919
BshVI	ATCGAT	1 cut(s)	629
BsiHKCI	CYCGRG	2 cut(s)	479, 490
BslI	CCNNNNNNNGG	4 cut(s)	254, 750, 751, 1024
BsmAI	GTCTC	1 cut(s)	1030
BsnI	GGCC	3 cut(s)	42, 764, 772
BsoBI	CYCGRG	2 cut(s)	479, 490
Bsp1286I	GDGCHC	1 cut(s)	1019
Bsp143I	GATC	3 cut(s)	361, 781, 924
Bsp1720I	GCTNAGC	1 cut(s)	641
Bsp19I	CCATGG	1 cut(s)	980
BspACI	CCGC	5 cut(s)	179, 245, 255, 373, 930
BspANI	GGCC	3 cut(s)	42, 764, 772
BspCNI	CTCAG	1 cut(s)	175
BspDI	ATCGAT	1 cut(s)	629
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	622, 921, 1016
BspMAI	CTGCAG	2 cut(s)	112, 217
BspOI	GCTAGC	1 cut(s)	272
BspPI	GGATC	2 cut(s)	356, 919
BspT107I	GGYRCC	1 cut(s)	919
BsrI	ACTGG	5 cut(s)	28, 93, 449, 1010, 1016
BssECI	CCNNGG	2 cut(s)	526, 980
BssMI	GATC	3 cut(s)	361, 781, 924
BssT1I	CCWWGG	2 cut(s)	526, 980
Bst4CI	ACNGT	1 cut(s)	779
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	270, 575, 988
BstDEI	CTNAG	4 cut(s)	183, 288, 309, 641
BstDSI	CCRYGG	1 cut(s)	980
BstF5I	GGATG	5 cut(s)	40, 319, 457, 603, 883
BstFNI	CGCG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	338
BstHHI	GCGC	2 cut(s)	337, 884
BstKTI	GATC	3 cut(s)	364, 784, 927
BstMAI	GTCTC	1 cut(s)	1030
BstMBI	GATC	3 cut(s)	361, 781, 924
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 179, 722
BstNSI	RCATGY	1 cut(s)	990
BstSFI	CTRYAG	3 cut(s)	108, 213, 503
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	5 cut(s)	94, 122, 227, 271, 737
BstXI	CCANNNNNNTGG	3 cut(s)	35, 377, 878
Bsu15I	ATCGAT	1 cut(s)	629
BsuRI	GGCC	3 cut(s)	42, 764, 772
BsuTUI	ATCGAT	1 cut(s)	629
BtgI	CCRYGG	1 cut(s)	980
BtsCI	GGATG	5 cut(s)	40, 319, 457, 603, 883
BtsI	GCAGTG	2 cut(s)	180, 964
BtsIMutI	CAGTG	3 cut(s)	180, 784, 964
Cac8I	GCNNGC	3 cut(s)	270, 575, 988
CaiI	CAGNNNCTG	1 cut(s)	728
CfoI	GCGC	2 cut(s)	337, 884
Cfr13I	GGNCC	1 cut(s)	530
ClaI	ATCGAT	1 cut(s)	629
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	5 cut(s)	366, 551, 746, 981, 987
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	4 cut(s)	183, 288, 309, 641
DpnI	GATC	3 cut(s)	363, 783, 926
DpnII	GATC	3 cut(s)	361, 781, 924
EaeI	YGGCCR	1 cut(s)	770
Eco130I	CCWWGG	2 cut(s)	526, 980
Eco24I	GRGCYC	1 cut(s)	1019
Eco47I	GGWCC	1 cut(s)	530
Eco47III	AGCGCT	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	852
Eco88I	CYCGRG	2 cut(s)	479, 490
EcoT14I	CCWWGG	2 cut(s)	526, 980
EcoT22I	ATGCAT	1 cut(s)	518
EcoT38I	GRGCYC	1 cut(s)	1019
ErhI	CCWWGG	2 cut(s)	526, 980
FaeI	CATG	5 cut(s)	369, 554, 749, 984, 990
FatI	CATG	5 cut(s)	365, 550, 745, 980, 986
FauI	CCCGC	1 cut(s)	937
FbaI	TGATCA	1 cut(s)	781
FblI	GTMKAC	2 cut(s)	866, 1002
Fnu4HI	GCNGC	6 cut(s)	108, 111, 180, 216, 285, 726
FokI	GGATG	5 cut(s)	47, 326, 464, 610, 890
FriOI	GRGCYC	1 cut(s)	1019
Fsp4HI	GCNGC	6 cut(s)	108, 111, 180, 216, 285, 726
FspBI	CTAG	5 cut(s)	84, 269, 273, 279, 1045
GlaI	GCGC	2 cut(s)	336, 883
GluI	GCNGC	6 cut(s)	108, 111, 180, 216, 285, 726
GsuI	CTGGAG	2 cut(s)	729, 1033
HaeII	RGCGCY	1 cut(s)	338
HaeIII	GGCC	3 cut(s)	42, 764, 772
HhaI	GCGC	2 cut(s)	337, 884
Hin1II	CATG	5 cut(s)	369, 554, 749, 984, 990
Hin6I	GCGC	2 cut(s)	335, 882
HinP1I	GCGC	2 cut(s)	335, 882
HincII	GTYRAC	1 cut(s)	867
HindII	GTYRAC	1 cut(s)	867
HinfI	GANTC	3 cut(s)	20, 209, 1021
HphI	GGTGA	1 cut(s)	969
Hpy166II	GTNNAC	4 cut(s)	133, 867, 977, 1003
Hpy188I	TCNGA	5 cut(s)	61, 240, 672, 877, 943
Hpy188III	TCNNGA	4 cut(s)	479, 481, 708, 758
Hpy8I	GTNNAC	4 cut(s)	133, 867, 977, 1003
HpyAV	CCTTC	5 cut(s)	611, 670, 825, 827, 910
HpyCH4III	ACNGT	1 cut(s)	779
HpyCH4V	TGCA	7 cut(s)	110, 164, 173, 215, 516, 797, 962
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 179, 722
HpyF3I	CTNAG	4 cut(s)	183, 288, 309, 641
Hsp92II	CATG	5 cut(s)	369, 554, 749, 984, 990
HspAI	GCGC	2 cut(s)	335, 882
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	3 cut(s)	361, 781, 924
LmnI	GCTCC	2 cut(s)	187, 1014
LpnPI	CCDG	9 cut(s)	41, 74, 78, 430, 434, 693, 714, 991, 997
Lsp1109I	GCAGC	5 cut(s)	94, 122, 227, 271, 737
LweI	GCATC	4 cut(s)	94, 476, 525, 588
MaeI	CTAG	5 cut(s)	84, 269, 273, 279, 1045
MalI	GATC	3 cut(s)	363, 783, 926
MboI	GATC	3 cut(s)	361, 781, 924
MboII	GAAGA	5 cut(s)	165, 430, 685, 744, 835
MfeI	CAATTG	1 cut(s)	798
MhlI	GDGCHC	1 cut(s)	1019
MlsI	TGGCCA	1 cut(s)	772
MluCI	AATT	3 cut(s)	120, 385, 798
MluNI	TGGCCA	1 cut(s)	772
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	2 cut(s)	12, 436
MnlI	CCTC	4 cut(s)	178, 486, 704, 754
Mox20I	TGGCCA	1 cut(s)	772
Mph1103I	ATGCAT	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	772
MseI	TTAA	3 cut(s)	45, 861, 948
MslI	CAYNNNNRTG	2 cut(s)	375, 985
Msp20I	TGGCCA	1 cut(s)	772
MspA1I	CMGCKG	1 cut(s)	728
MunI	CAATTG	1 cut(s)	798
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	170, 179, 722
NcoI	CCATGG	1 cut(s)	980
NdeII	GATC	3 cut(s)	361, 781, 924
NheI	GCTAGC	1 cut(s)	268
NlaIII	CATG	5 cut(s)	369, 554, 749, 984, 990
NlaIV	GGNNCC	3 cut(s)	622, 921, 1016
NsiI	ATGCAT	1 cut(s)	518
NspI	RCATGY	1 cut(s)	990
PaeI	GCATGC	1 cut(s)	990
PaeR7I	CTCGAG	2 cut(s)	479, 490
PfeI	GAWTC	2 cut(s)	209, 1021
PkrI	GCNGC	6 cut(s)	109, 112, 181, 217, 286, 727
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	622, 921, 1016
PspPI	GGNCC	1 cut(s)	530
PspXI	VCTCGAGB	1 cut(s)	490
PsrI	GAACNNNNNNTAC	2 cut(s)	604, 636
PstI	CTGCAG	2 cut(s)	112, 217
PstNI	CAGNNNCTG	1 cut(s)	728
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	2 cut(s)	375, 985
SalI	GTCGAC	1 cut(s)	865
SaqAI	TTAA	3 cut(s)	45, 861, 948
SatI	GCNGC	6 cut(s)	108, 111, 180, 216, 285, 726
Sau3AI	GATC	3 cut(s)	361, 781, 924
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	1019
SfaNI	GCATC	4 cut(s)	94, 476, 525, 588
SfcI	CTRYAG	3 cut(s)	108, 213, 503
Sfr274I	CTCGAG	2 cut(s)	479, 490
SinI	GGWCC	1 cut(s)	530
SlaI	CTCGAG	2 cut(s)	479, 490
SmiMI	CAYNNNNRTG	2 cut(s)	375, 985
SmlI	CTYRAG	4 cut(s)	221, 479, 490, 758
SmoI	CTYRAG	4 cut(s)	221, 479, 490, 758
SphI	GCATGC	1 cut(s)	990
Sse9I	AATT	3 cut(s)	120, 385, 798
SsiI	CCGC	5 cut(s)	179, 245, 255, 373, 930
SspMI	CTAG	5 cut(s)	84, 269, 273, 279, 1045
StyI	CCWWGG	2 cut(s)	526, 980
TaaI	ACNGT	1 cut(s)	779
TaqI	TCGA	8 cut(s)	145, 151, 480, 491, 519, 629, 866, 900
TaqII	GACCGA	2 cut(s)	547, 926
TasI	AATT	3 cut(s)	120, 385, 798
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	209, 1021
Tru1I	TTAA	3 cut(s)	45, 861, 948
Tru9I	TTAA	3 cut(s)	45, 861, 948
TscAI	CASTG	3 cut(s)	180, 784, 964
TseI	GCWGC	5 cut(s)	107, 110, 215, 284, 725
TspDTI	ATGAA	2 cut(s)	567, 836
TspRI	CASTG	3 cut(s)	180, 784, 964
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	990
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XhoI	CTCGAG	2 cut(s)	479, 490
XmiI	GTMKAC	2 cut(s)	866, 1002
XspI	CTAG	5 cut(s)	84, 269, 273, 279, 1045
Zsp2I	ATGCAT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.