Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Reverse (-)

2449296 .. 2452791

Gene Structure 3496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1028100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGAATCAGATCTTCAGCAGCATCACAAACCCCAGCAGCATATGAACTCTGGCTTGATGCGGTACCGGTCAGCTCCCAGCTCATATTTCACAAACATTTTGGACTCAGAGCTTTATGAGCCGTTTTTCAATCGGCCTTCTAGCCCTGAAACCGAGAGGATTTTGGCCCGGTTTCTGGCCAGTGAAGTTGGTGGTAATGGAGGAGGAGGAGGTGGTGGTGGTGGAGGAACAGAACAAATTGCATCACAACACAAAGTAGCAACACAAGTTAATAATCAGCAACCACAATTTTTGGTGCCTAAGGTGGATGATGAAGTGGAGGTGATTCAACAGCACAAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGAGCAATTTGAACAACTATTCATCTGTTGCTCAAGGATTTTACCAAAGTCCAGCGGCGAAGCCGCCTTTGCCTAATCAGAACTTGACATCAGCTAATGAAGGAGCTTATTCAATGAGGGGAAGTCATTTGCCTCCTATGAAAACCGGTAGTGGTGTCGCGAATTCCAATCTCATTCGGCATAGTAGCTCGCCTGCTGGATGGTTCTCCAATATGAACATTGATGGCTATGCTGCATTGAGAGGAATGGGAAACTTCGGAGCACGTGATAGCACTAATGAAGAAGCATCTTTTTCTCCTGCAAGCAGGTTGAAAAATTTCTCTTCAGTGCCACCATCTACATCGGAGCTAATTAGTCCGATTTCTGAAATTGGGAACAAAAGAATGCGATCGAATAGTCTAGATGCTAGAGGTTTTGGGGATGGCCGCGGTAACAATTATGCGACTGGTTTCCCAATGGATTCATGGGATGACTCTGCGATTCTAGGTGATGATATCAGCAGTTCAACAGGCTTTAGGGATGACGATGTGAAAGCATACACTGGTTTAAGTCCATCCGAAACTCAGGATGTAGAGGCCGGAAGTCGCCCTCCTACACTTCTAGCTCATCACTTGAGCTTGCCAAAAACAGCCACTGAGATGGCTGCCATTGAAAAGTTTTTGCAGCTCCAAGATTCTGTTCCTTGTAAGATTCGAGCAAAGCGGGGCTGTGCAACACACCCAAGAAGCATTGCTGAGAGGGTGAGAAGAACCCGAATTAGCGAACGAATGAGGAAACTGCAAGAACTTGTACCGAACATGGACAAGCAAACAAACACTTCAGACATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTTCAAACTCAAGTCCAGACGCTCTCTGAAAATCGTGCCAAGTGTACCTGCTCAAAGAAGCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

434

Amino Acids

47.54

Weight (kDa)

7.16

Isoelectric Point (pI)

65.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	368 - 413	3.3e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	672, 1289
Acc65I	GGTACC	1 cut(s)	63
AccB1I	GGYRCC	2 cut(s)	63, 295
AccII	CGCG	2 cut(s)	536, 804
AciI	CCGC	6 cut(s)	61, 431, 440, 802, 804, 1078
AcoI	YGGCCR	2 cut(s)	177, 799
AcsI	RAATTY	2 cut(s)	538, 691
AcuI	CTGAAG	2 cut(s)	684, 1179
AcvI	CACGTG	1 cut(s)	641
AfaI	GTAC	4 cut(s)	65, 1167, 1223, 1279
AfiI	CCNNNNNNNGG	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	1200
AgeI	ACCGGT	2 cut(s)	66, 521
AgsI	TTSAA	8 cut(s)	130, 329, 388, 489, 688, 882, 1028, 1238
AjuI	GAANNNNNNNTTGG	2 cut(s)	1038, 1070
Alw21I	GWGCWC	1 cut(s)	640
AlwNI	CAGNNNCTG	1 cut(s)	1010
AoxI	GGCC	5 cut(s)	134, 165, 177, 799, 951
ApoI	RAATTY	2 cut(s)	538, 691
AsiGI	ACCGGT	2 cut(s)	66, 521
Asp700I	GAANNNNTTC	1 cut(s)	692
Asp718I	GGTACC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	3 cut(s)	334, 875, 1129
AxyI	CCTNAGG	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	2 cut(s)	63, 295
BbrPI	CACGTG	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	640
BccI	CCATC	6 cut(s)	570, 593, 718, 791, 937, 1009
BceAI	ACGGC	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	169
BfaI	CTAG	5 cut(s)	141, 776, 783, 860, 977
BfuAI	ACCTGC	2 cut(s)	672, 1289
BglII	AGATCT	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	65, 297
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	5 cut(s)	31, 48, 251, 671, 769
BpuEI	CTTGAG	3 cut(s)	393, 1009, 1227
BpuMI	CCSGG	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	641
BsaJI	CCNNGG	1 cut(s)	802
BsaWI	WCCGGW	2 cut(s)	66, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse118I	RCCGGY	2 cut(s)	66, 521
Bse1I	ACTGG	3 cut(s)	180, 826, 922
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	1104
BseDI	CCNNGG	1 cut(s)	802
BseGI	GGATG	7 cut(s)	313, 581, 802, 850, 901, 929, 949
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	1104
BseMII	CTCAG	4 cut(s)	120, 953, 1002, 1101
BseNI	ACTGG	3 cut(s)	180, 826, 922
BseRI	GAGGAG	3 cut(s)	216, 219, 222
BseYI	CCCAGC	2 cut(s)	33, 77
Bsh1236I	CGCG	2 cut(s)	536, 804
Bsh1285I	CGRYCG	1 cut(s)	767
BshFI	GGCC	5 cut(s)	136, 167, 179, 801, 953
BshNI	GGYRCC	2 cut(s)	63, 295
BshTI	ACCGGT	2 cut(s)	66, 521
BsiEI	CGRYCG	1 cut(s)	767
BsiHKAI	GWGCWC	1 cut(s)	640
BsiSI	CCGG	4 cut(s)	67, 169, 522, 954
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	5 cut(s)	136, 167, 179, 801, 953
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	2 cut(s)	10, 764
Bsp68I	TCGCGA	1 cut(s)	536
BspACI	CCGC	6 cut(s)	61, 431, 440, 802, 804, 1078
BspANI	GGCC	5 cut(s)	136, 167, 179, 801, 953
BspCNI	CTCAG	4 cut(s)	119, 952, 1003, 1102
BspFNI	CGCG	2 cut(s)	536, 804
BspLI	GGNNCC	2 cut(s)	65, 297
BspMI	ACCTGC	2 cut(s)	672, 1289
BspT107I	GGYRCC	2 cut(s)	63, 295
BsrDI	GCAATG	1 cut(s)	1104
BsrFI	RCCGGY	2 cut(s)	66, 521
BsrI	ACTGG	3 cut(s)	180, 826, 922
BssAI	RCCGGY	2 cut(s)	66, 521
BssECI	CCNNGG	1 cut(s)	802
BssMI	GATC	2 cut(s)	10, 764
Bst6I	CTCTTC	1 cut(s)	703
BstBAI	YACGTR	1 cut(s)	641
BstC8I	GCNNGC	4 cut(s)	566, 570, 679, 995
BstDEI	CTNAG	5 cut(s)	106, 300, 939, 1011, 1110
BstDSI	CCRYGG	1 cut(s)	802
BstF5I	GGATG	7 cut(s)	313, 581, 802, 850, 901, 929, 949
BstFNI	CGCG	2 cut(s)	536, 804
BstKTI	GATC	2 cut(s)	13, 767
BstMBI	GATC	2 cut(s)	10, 764
BstMCI	CGRYCG	1 cut(s)	767
BstMWI	GCNNNNNNNGC	9 cut(s)	118, 340, 346, 349, 352, 355, 364, 373, 445
BstNSI	RCATGY	1 cut(s)	1204
BstSCI	CCNGG	1 cut(s)	167
BstUI	CGCG	2 cut(s)	536, 804
BstX2I	RGATCY	1 cut(s)	10
BstXI	CCANNNNNNTGG	1 cut(s)	1015
BstYI	RGATCY	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	5 cut(s)	136, 167, 179, 801, 953
BtgI	CCRYGG	1 cut(s)	802
BtsCI	GGATG	7 cut(s)	313, 581, 802, 850, 901, 929, 949
BtsIMutI	CAGTG	4 cut(s)	187, 708, 915, 1008
BtuMI	TCGCGA	1 cut(s)	536
BveI	ACCTGC	2 cut(s)	672, 1289
Cac8I	GCNNGC	4 cut(s)	566, 570, 679, 995
CaiI	CAGNNNCTG	1 cut(s)	1010
Cfr10I	RCCGGY	2 cut(s)	66, 521
Cfr13I	GGNCC	1 cut(s)	166
Cfr42I	CCGCGG	1 cut(s)	805
CseI	GACGC	1 cut(s)	1261
Csp6I	GTAC	4 cut(s)	64, 1166, 1222, 1278
CspAI	ACCGGT	2 cut(s)	66, 521
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	3 cut(s)	840, 1174, 1201
CviQI	GTAC	4 cut(s)	64, 1166, 1222, 1278
DdeI	CTNAG	5 cut(s)	106, 300, 939, 1011, 1110
DpnI	GATC	2 cut(s)	12, 766
DpnII	GATC	2 cut(s)	10, 764
EaeI	YGGCCR	2 cut(s)	177, 799
Eam1104I	CTCTTC	1 cut(s)	703
EarI	CTCTTC	1 cut(s)	703
Eco32I	GATATC	1 cut(s)	871
Eco57I	CTGAAG	2 cut(s)	684, 1179
Eco72I	CACGTG	1 cut(s)	641
Eco81I	CCTNAGG	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	538
EcoRV	GATATC	1 cut(s)	871
FaeI	CATG	3 cut(s)	843, 1177, 1204
FatI	CATG	3 cut(s)	839, 1173, 1200
FauI	CCCGC	1 cut(s)	1071
FauNDI	CATATG	1 cut(s)	42
FokI	GGATG	7 cut(s)	320, 588, 809, 857, 908, 916, 956
FspBI	CTAG	5 cut(s)	141, 776, 783, 860, 977
GsaI	CCCAGC	2 cut(s)	37, 81
HaeIII	GGCC	5 cut(s)	136, 167, 179, 801, 953
HapII	CCGG	4 cut(s)	67, 169, 522, 954
HgaI	GACGC	1 cut(s)	1261
Hin1II	CATG	3 cut(s)	843, 1177, 1204
HinfI	GANTC	8 cut(s)	5, 104, 325, 836, 848, 856, 1049, 1066
HpaII	CCGG	4 cut(s)	67, 169, 522, 954
HphI	GGTGA	3 cut(s)	334, 875, 1129
Hpy166II	GTNNAC	1 cut(s)	1278
Hpy188III	TCNNGA	4 cut(s)	535, 776, 941, 1249
Hpy8I	GTNNAC	1 cut(s)	1278
HpyAV	CCTTC	3 cut(s)	147, 470, 1244
HpyCH4IV	ACGT	1 cut(s)	640
HpyCH4V	TGCA	6 cut(s)	242, 611, 677, 1039, 1088, 1156
HpyF10VI	GCNNNNNNNGC	9 cut(s)	118, 340, 346, 349, 352, 355, 364, 373, 445
HpyF3I	CTNAG	5 cut(s)	106, 300, 939, 1011, 1110
HpySE526I	ACGT	1 cut(s)	640
Hsp92II	CATG	3 cut(s)	843, 1177, 1204
KpnI	GGTACC	1 cut(s)	67
KspI	CCGCGG	1 cut(s)	805
Kzo9I	GATC	2 cut(s)	10, 764
LmnI	GCTCC	5 cut(s)	79, 479, 635, 721, 1047
LweI	GCATC	5 cut(s)	31, 48, 251, 671, 769
MaeI	CTAG	5 cut(s)	141, 776, 783, 860, 977
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	1 cut(s)	806
MalI	GATC	2 cut(s)	12, 766
MboI	GATC	2 cut(s)	10, 764
MboII	GAAGA	4 cut(s)	5, 668, 690, 1134
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	640
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	9 cut(s)	237, 287, 382, 538, 691, 726, 744, 811, 1131
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	2 cut(s)	98, 842
MmeI	TCCRAC	1 cut(s)	1185
Mox20I	TGGCCA	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	692
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	3 cut(s)	270, 923, 1227
MslI	CAYNNNNRTG	1 cut(s)	1013
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	431, 804
MspI	CCGG	4 cut(s)	67, 169, 522, 954
MspR9I	CCNGG	1 cut(s)	169
Mva1269I	GAATGC	1 cut(s)	765
MvnI	CGCG	2 cut(s)	536, 804
MwoI	GCNNNNNNNGC	9 cut(s)	118, 340, 346, 349, 352, 355, 364, 373, 445
NciI	CCSGG	1 cut(s)	169
NdeI	CATATG	1 cut(s)	42
NdeII	GATC	2 cut(s)	10, 764
NlaIII	CATG	3 cut(s)	843, 1177, 1204
NlaIV	GGNNCC	2 cut(s)	65, 297
NruI	TCGCGA	1 cut(s)	536
NspI	RCATGY	1 cut(s)	1204
PciI	ACATGT	1 cut(s)	1200
PctI	GAATGC	1 cut(s)	765
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	6 cut(s)	5, 325, 836, 856, 1049, 1066
PinAI	ACCGGT	2 cut(s)	66, 521
Ple19I	CGATCG	1 cut(s)	767
PleI	GAGTC	2 cut(s)	98, 842
PmaCI	CACGTG	1 cut(s)	641
PmlI	CACGTG	1 cut(s)	641
PpsI	GAGTC	2 cut(s)	98, 842
Ppu21I	YACGTR	1 cut(s)	641
PscI	ACATGT	1 cut(s)	1200
PspCI	CACGTG	1 cut(s)	641
PspFI	CCCAGC	2 cut(s)	33, 77
PspN4I	GGNNCC	2 cut(s)	65, 297
PspPI	GGNCC	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	1010
PsuI	RGATCY	1 cut(s)	10
PvuI	CGATCG	1 cut(s)	767
RruI	TCGCGA	1 cut(s)	536
RsaI	GTAC	4 cut(s)	65, 1167, 1223, 1279
RsaNI	GTAC	4 cut(s)	64, 1166, 1222, 1278
RseI	CAYNNNNRTG	1 cut(s)	1013
SacII	CCGCGG	1 cut(s)	805
SaqAI	TTAA	3 cut(s)	270, 923, 1227
Sau3AI	GATC	2 cut(s)	10, 764
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	2 cut(s)	98, 842
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	640
SfaNI	GCATC	5 cut(s)	31, 48, 251, 671, 769
Sfr303I	CCGCGG	1 cut(s)	805
SgrBI	CCGCGG	1 cut(s)	805
SmiMI	CAYNNNNRTG	1 cut(s)	1013
SmlI	CTYRAG	3 cut(s)	408, 988, 1242
SmoI	CTYRAG	3 cut(s)	408, 988, 1242
Sse9I	AATT	9 cut(s)	237, 287, 382, 538, 691, 726, 744, 811, 1131
SsiI	CCGC	6 cut(s)	61, 431, 440, 802, 804, 1078
SspMI	CTAG	5 cut(s)	141, 776, 783, 860, 977
StyD4I	CCNGG	1 cut(s)	167
TaiI	ACGT	1 cut(s)	643
TaqI	TCGA	2 cut(s)	767, 1069
TasI	AATT	9 cut(s)	237, 287, 382, 538, 691, 726, 744, 811, 1131
TatI	WGTACW	1 cut(s)	1221
TauI	GCSGC	3 cut(s)	434, 442, 804
TfiI	GAWTC	6 cut(s)	5, 325, 836, 856, 1049, 1066
Tru1I	TTAA	3 cut(s)	270, 923, 1227
Tru9I	TTAA	3 cut(s)	270, 923, 1227
TscAI	CASTG	4 cut(s)	187, 708, 922, 1015
TspDTI	ATGAA	8 cut(s)	59, 327, 387, 489, 530, 605, 669, 828
TspRI	CASTG	4 cut(s)	187, 708, 922, 1015
XapI	RAATTY	2 cut(s)	538, 691
XbaI	TCTAGA	1 cut(s)	775
XceI	RCATGY	1 cut(s)	1204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	837
XmnI	GAANNNNTTC	1 cut(s)	692
XspI	CTAG	5 cut(s)	141, 776, 783, 860, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.