Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Reverse (-)

1862028 .. 1865316

Gene Structure 3289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1023200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGAATCAGATCTTCACCAGCATCATGACAAACCCCAGCAGCATATGAACTCTAGCTTGACGCGCTACCGGTCAGCTCCCAGCTCATATTTCACAAACATTTTGGACTCAGAGCTTTGTGAGCCCTTGTTCAATCGGCCTTCTAGCCCTGAAACCGAGAGGATTTTCTCCCGGTTTCTGGCTAGTGAAGGTGGTGGTAATGGAGGAGGAGGTGGTGGTGGAGGAACAGAAGAAATTGTATCACAACACAAAGTTGAAACACAGATTAATAATCAGCAACCACAATTTATGGTGCCTAAGGTTGATGATGAAGTGGGGGTGATTCAGCAGCAGCAGAGCAATTTGAACAACTATTCATCTGTTGCTCAAGGATTTTACCAGCCGTCGTCGAAACCGCCTTTGCCTAATCAGAACTTGAATGAAGGAGCTTATTCAATGGGGGGAAGTCACTTGCCTTCTATGAAAACCAGTGGTGATCTCGCAAATTCCAATCTTATTCGGCATAGTAGCTCGCCTGCTGGATTGTTCTCCAATATGAACATTGATGGCTATGGTACATTGAGAGGAATGGGAAACTTCGGAGCAAGTAATAGCACTAATGAAGAAGCATCTTTTTCTTCTGCGAGCAGGTTGAAAAATTTCTCTTCAGGGCCACCATCTACATCGGGGCTAATGAGTCCGATTTCTGAAATTGGGAACAAAAGAATGCGATCGAATAGTCAAGATGCTCGAGGTTTTGGGGATGGCCGTGGTAACAATTATGTGACTGGTTTCCCAATGGATTCATGGGATGACTCTGCGATTTTGGGTGATGATACAGGCTTTAGGGATGATGATGTGAAAGCATACACTGGTTTAAGTCCATCTGAAACTCAGGATGTGGAGACCGGAAATCATCCTCCTACACTTCTAGCTCATCACTTGAGCTTGCCAAAAACATCCGCGGAGATGGCTGCCATTGAAAAGTTTTTACAGTTCCAAGATTCTGTTCCTTGTAAGATTCGAGCAAAGCGGGGCTGCGCCACACACCCAAGAAGCATTGCTGAGAGGGTGAGAAGAACCCGAATTAGTGAACGAATGAGGAAACTGCAAGAGCTTGTACCAAACATGGACAAGCAAGCACACACTTCCGACATGTTGGATTTGGCTGTTGAGTACATTAAAGACCTTCAAACTCAAGTCCAGACGCTCTCCGAAAATCGTGCCAAGTGTACTTGCTCAAACAAGCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

412

Amino Acids

44.96

Weight (kDa)

6.07

Isoelectric Point (pI)

55.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	346 - 391	5.8e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	618
AccB1I	GGYRCC	1 cut(s)	292
AccII	CGCG	2 cut(s)	64, 944
AciI	CCGC	4 cut(s)	395, 942, 944, 1012
AcoI	YGGCCR	1 cut(s)	745
AcsI	RAATTY	2 cut(s)	484, 637
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	4 cut(s)	556, 1101, 1157, 1213
AfiI	CCNNNNNNNGG	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	1134
AgeI	ACCGGT	1 cut(s)	69
AgsI	TTSAA	8 cut(s)	133, 257, 346, 418, 435, 634, 962, 1172
AjuI	GAANNNNNNNTTGG	2 cut(s)	972, 1004
AluBI	AGCT	9 cut(s)	57, 77, 84, 115, 428, 510, 914, 927, 1096
AluI	AGCT	9 cut(s)	57, 77, 84, 115, 428, 510, 914, 927, 1096
Alw26I	GTCTC	1 cut(s)	878
Ama87I	CYCGRG	1 cut(s)	729
AoxI	GGCC	3 cut(s)	137, 650, 745
ApeKI	GCWGC	6 cut(s)	40, 328, 331, 953, 1017, 1228
ApoI	RAATTY	2 cut(s)	484, 637
AseI	ATTAAT	1 cut(s)	267
AsiGI	ACCGGT	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	638
AspLEI	GCGC	2 cut(s)	66, 1022
AspS9I	GGNCC	1 cut(s)	650
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	5 cut(s)	8, 331, 485, 821, 1063
AvaI	CYCGRG	1 cut(s)	729
AxyI	CCTNAGG	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	126
BbvI	GCAGC	5 cut(s)	52, 340, 343, 940, 1004
BccI	CCATC	5 cut(s)	539, 664, 737, 871, 943
BceAI	ACGGC	2 cut(s)	367, 732
BcgI	CGANNNNNNTGC	2 cut(s)	1184, 1218
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	878
BfaI	CTAG	4 cut(s)	54, 144, 183, 911
BfuAI	ACCTGC	1 cut(s)	618
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	6 cut(s)	41, 329, 332, 954, 1018, 1229
BlsI	GCNGC	6 cut(s)	42, 330, 333, 955, 1019, 1230
Bme1390I	CCNGG	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	729
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	3 cut(s)	31, 617, 715
BpuEI	CTTGAG	3 cut(s)	351, 943, 1161
BpuMI	CCSGG	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	878
BsaJI	CCNNGG	2 cut(s)	748, 942
BsaWI	WCCGGW	2 cut(s)	69, 887
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	1 cut(s)	69
Bse1I	ACTGG	3 cut(s)	468, 772, 856
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	1038
BseDI	CCNNGG	2 cut(s)	748, 942
BseGI	GGATG	6 cut(s)	748, 796, 835, 883, 895, 938
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	1038
BseMII	CTCAG	3 cut(s)	123, 887, 1035
BseNI	ACTGG	3 cut(s)	468, 772, 856
BseRI	GAGGAG	2 cut(s)	219, 222
BseXI	GCAGC	5 cut(s)	52, 340, 343, 940, 1004
BseYI	CCCAGC	2 cut(s)	36, 80
Bsh1236I	CGCG	2 cut(s)	64, 944
Bsh1285I	CGRYCG	1 cut(s)	713
BshFI	GGCC	3 cut(s)	139, 652, 747
BshNI	GGYRCC	1 cut(s)	292
BshTI	ACCGGT	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	713
BsiHKCI	CYCGRG	1 cut(s)	729
BsiSI	CCGG	3 cut(s)	70, 172, 888
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	878
BsmI	GAATGC	1 cut(s)	711
BsnI	GGCC	3 cut(s)	139, 652, 747
Bso31I	GGTCTC	1 cut(s)	878
BsoBI	CYCGRG	1 cut(s)	729
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	10, 475, 710
BspACI	CCGC	4 cut(s)	395, 942, 944, 1012
BspANI	GGCC	3 cut(s)	139, 652, 747
BspCNI	CTCAG	3 cut(s)	122, 886, 1036
BspFNI	CGCG	2 cut(s)	64, 944
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	618
BspT107I	GGYRCC	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	878
BsrDI	GCAATG	1 cut(s)	1038
BsrFI	RCCGGY	1 cut(s)	69
BsrI	ACTGG	3 cut(s)	468, 772, 856
BssAI	RCCGGY	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	748, 942
BssMI	GATC	3 cut(s)	10, 475, 710
Bst4CI	ACNGT	1 cut(s)	975
Bst6I	CTCTTC	1 cut(s)	649
BstC8I	GCNNGC	5 cut(s)	512, 516, 625, 929, 1119
BstDEI	CTNAG	4 cut(s)	109, 297, 873, 1044
BstDSI	CCRYGG	2 cut(s)	748, 942
BstF5I	GGATG	6 cut(s)	748, 796, 835, 883, 895, 938
BstFNI	CGCG	2 cut(s)	64, 944
BstHHI	GCGC	2 cut(s)	66, 1022
BstKTI	GATC	3 cut(s)	13, 478, 713
BstMAI	GTCTC	1 cut(s)	878
BstMBI	GATC	3 cut(s)	10, 475, 710
BstMCI	CGRYCG	1 cut(s)	713
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 121, 950
BstNSI	RCATGY	1 cut(s)	1138
BstSCI	CCNGG	1 cut(s)	170
BstUI	CGCG	2 cut(s)	64, 944
BstV1I	GCAGC	5 cut(s)	52, 340, 343, 940, 1004
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	139, 652, 747
BtgI	CCRYGG	2 cut(s)	748, 942
BtsCI	GGATG	6 cut(s)	748, 796, 835, 883, 895, 938
BtsIMutI	CAGTG	2 cut(s)	475, 849
BveI	ACCTGC	1 cut(s)	618
Cac8I	GCNNGC	5 cut(s)	512, 516, 625, 929, 1119
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	2 cut(s)	66, 1022
Cfr10I	RCCGGY	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	650
Cfr42I	CCGCGG	1 cut(s)	945
CseI	GACGC	2 cut(s)	70, 1195
Csp6I	GTAC	4 cut(s)	555, 1100, 1156, 1212
CspAI	ACCGGT	1 cut(s)	69
CviAII	CATG	4 cut(s)	26, 786, 1108, 1135
CviQI	GTAC	4 cut(s)	555, 1100, 1156, 1212
DdeI	CTNAG	4 cut(s)	109, 297, 873, 1044
DpnI	GATC	3 cut(s)	12, 477, 712
DpnII	GATC	3 cut(s)	10, 475, 710
EaeI	YGGCCR	1 cut(s)	745
Eam1104I	CTCTTC	1 cut(s)	649
EarI	CTCTTC	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	878
Eco57I	CTGAAG	1 cut(s)	630
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	729
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	4 cut(s)	29, 789, 1111, 1138
FatI	CATG	4 cut(s)	25, 785, 1107, 1134
FauI	CCCGC	1 cut(s)	1005
FauNDI	CATATG	1 cut(s)	45
Fnu4HI	GCNGC	6 cut(s)	41, 329, 332, 954, 1018, 1229
FokI	GGATG	6 cut(s)	755, 803, 842, 882, 890, 925
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	6 cut(s)	41, 329, 332, 954, 1018, 1229
FspBI	CTAG	4 cut(s)	54, 144, 183, 911
GlaI	GCGC	2 cut(s)	65, 1021
GluI	GCNGC	6 cut(s)	41, 329, 332, 954, 1018, 1229
GsaI	CCCAGC	2 cut(s)	40, 84
HaeIII	GGCC	3 cut(s)	139, 652, 747
HapII	CCGG	3 cut(s)	70, 172, 888
HgaI	GACGC	2 cut(s)	70, 1195
HhaI	GCGC	2 cut(s)	66, 1022
Hin1II	CATG	4 cut(s)	29, 789, 1111, 1138
Hin6I	GCGC	2 cut(s)	64, 1020
HinP1I	GCGC	2 cut(s)	64, 1020
HinfI	GANTC	8 cut(s)	5, 107, 322, 676, 782, 794, 983, 1000
HpaII	CCGG	3 cut(s)	70, 172, 888
HphI	GGTGA	5 cut(s)	8, 331, 485, 821, 1063
Hpy166II	GTNNAC	2 cut(s)	1073, 1212
Hpy188I	TCNGA	9 cut(s)	10, 112, 411, 581, 681, 688, 868, 1132, 1195
Hpy188III	TCNNGA	4 cut(s)	26, 722, 875, 1183
Hpy8I	GTNNAC	2 cut(s)	1073, 1212
Hpy99I	CGWCG	2 cut(s)	388, 391
HpyAV	CCTTC	5 cut(s)	150, 182, 416, 465, 1178
HpyCH4III	ACNGT	1 cut(s)	975
HpyCH4V	TGCA	1 cut(s)	1090
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 121, 950
HpyF3I	CTNAG	4 cut(s)	109, 297, 873, 1044
Hsp92II	CATG	4 cut(s)	29, 789, 1111, 1138
HspAI	GCGC	2 cut(s)	64, 1020
KspI	CCGCGG	1 cut(s)	945
Kzo9I	GATC	3 cut(s)	10, 475, 710
LmnI	GCTCC	3 cut(s)	82, 425, 581
Lsp1109I	GCAGC	5 cut(s)	52, 340, 343, 940, 1004
LweI	GCATC	3 cut(s)	31, 617, 715
MaeI	CTAG	4 cut(s)	54, 144, 183, 911
MaeIII	GTNAC	3 cut(s)	446, 752, 763
MalI	GATC	3 cut(s)	12, 477, 712
MboI	GATC	3 cut(s)	10, 475, 710
MboII	GAAGA	6 cut(s)	5, 242, 609, 614, 636, 1068
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	8 cut(s)	234, 284, 340, 484, 637, 690, 757, 1065
MlyI	GAGTC	3 cut(s)	101, 685, 788
MmeI	TCCRAC	2 cut(s)	1119, 1155
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	3 cut(s)	267, 857, 1161
MspA1I	CMGCKG	1 cut(s)	944
MspI	CCGG	3 cut(s)	70, 172, 888
MspR9I	CCNGG	1 cut(s)	172
Mva1269I	GAATGC	1 cut(s)	711
MvnI	CGCG	2 cut(s)	64, 944
MwoI	GCNNNNNNNGC	3 cut(s)	63, 121, 950
NciI	CCSGG	1 cut(s)	172
NdeI	CATATG	1 cut(s)	45
NdeII	GATC	3 cut(s)	10, 475, 710
NlaIII	CATG	4 cut(s)	29, 789, 1111, 1138
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	2 cut(s)	446, 763
NspI	RCATGY	1 cut(s)	1138
PaeR7I	CTCGAG	1 cut(s)	729
PagI	TCATGA	1 cut(s)	25
PciI	ACATGT	1 cut(s)	1134
PctI	GAATGC	1 cut(s)	711
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	5 cut(s)	5, 322, 782, 983, 1000
PinAI	ACCGGT	1 cut(s)	69
PkrI	GCNGC	6 cut(s)	42, 330, 333, 955, 1019, 1230
Ple19I	CGATCG	1 cut(s)	713
PleI	GAGTC	3 cut(s)	101, 684, 788
PpsI	GAGTC	3 cut(s)	101, 684, 788
PscI	ACATGT	1 cut(s)	1134
PshBI	ATTAAT	1 cut(s)	267
PspFI	CCCAGC	2 cut(s)	36, 80
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	650
PspXI	VCTCGAGB	1 cut(s)	729
PsuI	RGATCY	1 cut(s)	10
PvuI	CGATCG	1 cut(s)	713
RsaI	GTAC	4 cut(s)	556, 1101, 1157, 1213
RsaNI	GTAC	4 cut(s)	555, 1100, 1156, 1212
SacII	CCGCGG	1 cut(s)	945
SaqAI	TTAA	3 cut(s)	267, 857, 1161
SatI	GCNGC	6 cut(s)	41, 329, 332, 954, 1018, 1229
Sau3AI	GATC	3 cut(s)	10, 475, 710
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	3 cut(s)	101, 685, 788
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	3 cut(s)	31, 617, 715
Sfr274I	CTCGAG	1 cut(s)	729
Sfr303I	CCGCGG	1 cut(s)	945
SgrBI	CCGCGG	1 cut(s)	945
SlaI	CTCGAG	1 cut(s)	729
SmlI	CTYRAG	4 cut(s)	366, 729, 922, 1176
SmoI	CTYRAG	4 cut(s)	366, 729, 922, 1176
Sse9I	AATT	8 cut(s)	234, 284, 340, 484, 637, 690, 757, 1065
SsiI	CCGC	4 cut(s)	395, 942, 944, 1012
SspMI	CTAG	4 cut(s)	54, 144, 183, 911
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	975
TaqI	TCGA	4 cut(s)	389, 713, 730, 1003
TasI	AATT	8 cut(s)	234, 284, 340, 484, 637, 690, 757, 1065
TatI	WGTACW	2 cut(s)	1155, 1211
TfiI	GAWTC	5 cut(s)	5, 322, 782, 983, 1000
Tru1I	TTAA	3 cut(s)	267, 857, 1161
Tru9I	TTAA	3 cut(s)	267, 857, 1161
TscAI	CASTG	2 cut(s)	475, 856
TseFI	GTSAC	2 cut(s)	446, 763
TseI	GCWGC	6 cut(s)	40, 328, 331, 953, 1017, 1228
Tsp45I	GTSAC	2 cut(s)	446, 763
TspDTI	ATGAA	8 cut(s)	62, 324, 345, 435, 476, 551, 615, 774
TspRI	CASTG	2 cut(s)	475, 856
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	2 cut(s)	484, 637
XceI	RCATGY	1 cut(s)	1138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	783
XhoI	CTCGAG	1 cut(s)	729
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	4 cut(s)	54, 144, 183, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.