Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Forward (+)

83273897 .. 83277699

Gene Structure 3803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35193

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGAGTCAGATCTTCAGCAGCCACATCATAAAACCCAGCAGCATATGAACTCCAGCTTGTTGCGGTATCGATCAGCACCGAGTTCTTATTTCGCAAATGTTTTGGACACAGAATTCAATGAGCCCTTCTTCAACCGAGCCACAAGCCCCGAAACTGAACGAATTTTAGCTCGATTTATGAGTAGTCAAGGTGGTGATGGTGGAGGAACAGAAGAAATTGTACCACATCAGAAAGTAGTAACAGATCAGCAACCACAATTTTTGGTGCCTAAGGTGGATAATGAAGCAGCAATGATTCAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGGAGCAACAGCAACAACAGCAGCAGCAGCAGCAGCAGAGTCATATAAACAACTATACATCTCAGGGCTTTTACCAAATTCCATCTTCGAAACCGCCTTTGCCGAATCAGAATATGGCTTCATCTAATGAAGGAGCATCTGCTGCTGCTTATCCAATGGGGTCAAATCAGTTGCCTCCAATGAAAACTGGTGGTGTAACTCACTCGAATCTTATTAGGCATAGTAGCTCTCCTGCTGGACTTTTCGCCAATATCAATATTGATGTGGCAGGGTATGCTGCATTGAGAGGCATGGGAAATTTCGGAGTGAGTAATAGCACCAATGAAGAAGCATCATTTTCTCCAGCAAGCAGGTTGAAGAACTTCTCATCAGGGCCACCACCATCTACGTCCGGCATAATGAGTCCAATTTCCCAAATTGGGGAGAAAAGAATGCGATCGAATAATCAAGAACCCACCGGATCCGGAGGTCGGTTTAGTGAAGGTCATAGTAACAATTATGTCTCAGGTTTCCCCATTGGTTCATGGGAAGACTCTTCTCTTTTGGGGGATGATATCATTGGTTCAACTGGCTTTAGGGATGATGATGATGATGTGAAAACAATTACTGGTCTAAGTGCTTCAGAAACTCAGAATATGGAAGCAAGAAGTCGCCCTCTGGCTCATCACTTAAGCTTGCCAAAAACATCAGCAGAAATGGCTGCCATTGAAAATTTCTTGCAGTTTCAAGATTCTGTGCCTTGTAAGATTCGAGCAAAGCGGGGTTGTGCCACACATCCTCGAAGCATTGCTGAGAGGGTGAGAAGAACCCGAATCAGTGAAAGAATGAGGAAACTACAAGAGCTTGTACCTAACATGGACAAGCAAACCAACACTGCAGACATGTTAGATTTGGCTGTTGACTACATCAAAGACCTTCAAACTGAAGTCCAGACGCTGTCAGAAGCTCGTGCTAAGTGTACGTGTTCAATCAAGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

437

Amino Acids

48.21

Weight (kDa)

6.14

Isoelectric Point (pI)

65.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	372 - 417	9.5e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	672
AccB1I	GGYRCC	1 cut(s)	265
AccIII	TCCGGA	1 cut(s)	794
AciI	CCGC	3 cut(s)	64, 425, 1090
AclWI	GGATC	2 cut(s)	786, 799
AcsI	RAATTY	5 cut(s)	113, 162, 408, 628, 1042
AcuI	CTGAAG	2 cut(s)	936, 1275
AfaI	GTAC	3 cut(s)	222, 1179, 1291
AfiI	CCNNNNNNNGG	3 cut(s)	750, 751, 801
AflII	CTTAAG	1 cut(s)	1000
AflIII	ACRYGT	2 cut(s)	1212, 1292
AgsI	TTSAA	9 cut(s)	118, 133, 299, 688, 897, 1040, 1058, 1250, 1299
AluBI	AGCT	6 cut(s)	57, 170, 558, 1005, 1174, 1277
AluI	AGCT	6 cut(s)	57, 170, 558, 1005, 1174, 1277
Alw26I	GTCTC	1 cut(s)	838
AlwI	GGATC	2 cut(s)	786, 799
AlwNI	CAGNNNCTG	1 cut(s)	1267
Aor13HI	TCCGGA	1 cut(s)	794
AoxI	GGCC	1 cut(s)	704
ApoI	RAATTY	5 cut(s)	113, 162, 408, 628, 1042
Asp700I	GAANNNNTTC	1 cut(s)	692
AspS9I	GGNCC	1 cut(s)	704
AsuHPI	GGTGA	2 cut(s)	206, 1141
AsuII	TTCGAA	1 cut(s)	419
AxyI	CCTNAGG	1 cut(s)	270
BamHI	GGATCC	1 cut(s)	791
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	126
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BauI	CACGAG	1 cut(s)	1278
BbsI	GAAGAC	1 cut(s)	867
BccI	CCATC	3 cut(s)	191, 421, 721
BcoDI	GTCTC	1 cut(s)	838
BfmI	CTRYAG	1 cut(s)	1206
BfrI	CTTAAG	1 cut(s)	1000
BfuAI	ACCTGC	1 cut(s)	672
BglII	AGATCT	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	704
BmiI	GGNNCC	2 cut(s)	267, 793
BmsI	GCATC	2 cut(s)	476, 671
BpiI	GAAGAC	1 cut(s)	867
BpmI	CTGGAG	2 cut(s)	37, 657
Bpu14I	TTCGAA	1 cut(s)	419
Bsa29I	ATCGAT	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	1293
BsaWI	WCCGGW	2 cut(s)	788, 794
Bsc4I	CCNNNNNNNGG	3 cut(s)	750, 751, 801
Bse1I	ACTGG	3 cut(s)	523, 904, 943
Bse21I	CCTNAGG	1 cut(s)	270
Bse3DI	GCAATG	2 cut(s)	297, 1116
BseAI	TCCGGA	1 cut(s)	794
BseCI	ATCGAT	1 cut(s)	70
BseGI	GGATG	3 cut(s)	886, 916, 1105
BseLI	CCNNNNNNNGG	3 cut(s)	750, 751, 801
BseMI	GCAATG	2 cut(s)	297, 1116
BseMII	CTCAG	4 cut(s)	407, 849, 974, 1113
BseNI	ACTGG	3 cut(s)	523, 904, 943
BseYI	CCCAGC	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	770
BshFI	GGCC	1 cut(s)	706
BshNI	GGYRCC	1 cut(s)	265
BshVI	ATCGAT	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	770
BsiSI	CCGG	3 cut(s)	723, 789, 795
BslI	CCNNNNNNNGG	3 cut(s)	750, 751, 801
BsmAI	GTCTC	1 cut(s)	838
BsmI	GAATGC	1 cut(s)	768
BsnI	GGCC	1 cut(s)	706
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp13I	TCCGGA	1 cut(s)	794
Bsp143I	GATC	5 cut(s)	10, 71, 244, 767, 791
BspACI	CCGC	3 cut(s)	64, 425, 1090
BspANI	GGCC	1 cut(s)	706
BspCNI	CTCAG	4 cut(s)	406, 848, 973, 1114
BspDI	ATCGAT	1 cut(s)	70
BspEI	TCCGGA	1 cut(s)	794
BspLI	GGNNCC	2 cut(s)	267, 793
BspMAI	CTGCAG	1 cut(s)	1210
BspMI	ACCTGC	1 cut(s)	672
BspPI	GGATC	2 cut(s)	786, 799
BspT104I	TTCGAA	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	265
BspTI	CTTAAG	1 cut(s)	1000
BsrDI	GCAATG	2 cut(s)	297, 1116
BsrI	ACTGG	3 cut(s)	523, 904, 943
BssMI	GATC	5 cut(s)	10, 71, 244, 767, 791
BssSI	CACGAG	1 cut(s)	1278
Bst2BI	CACGAG	1 cut(s)	1278
Bst6I	CTCTTC	1 cut(s)	871
BstAFI	CTTAAG	1 cut(s)	1000
BstAPI	GCANNNNNTGC	2 cut(s)	473, 605
BstBAI	YACGTR	1 cut(s)	1293
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	679, 1007
BstDEI	CTNAG	7 cut(s)	270, 393, 835, 944, 960, 1122, 1284
BstF5I	GGATG	3 cut(s)	886, 916, 1105
BstKTI	GATC	5 cut(s)	13, 74, 247, 770, 794
BstMAI	GTCTC	1 cut(s)	838
BstMBI	GATC	5 cut(s)	10, 71, 244, 767, 791
BstMCI	CGRYCG	1 cut(s)	770
BstNSI	RCATGY	1 cut(s)	1216
BstSFI	CTRYAG	1 cut(s)	1206
BstV2I	GAAGAC	1 cut(s)	867
BstX2I	RGATCY	2 cut(s)	10, 791
BstYI	RGATCY	2 cut(s)	10, 791
Bsu15I	ATCGAT	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	706
BsuTUI	ATCGAT	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	886, 916, 1105
BtsI	GCAGTG	1 cut(s)	1203
BtsIMutI	CAGTG	2 cut(s)	1153, 1203
BveI	ACCTGC	1 cut(s)	672
Cac8I	GCNNGC	2 cut(s)	679, 1007
CaiI	CAGNNNCTG	1 cut(s)	1267
Cfr13I	GGNCC	1 cut(s)	704
ClaI	ATCGAT	1 cut(s)	70
CseI	GACGC	1 cut(s)	1273
Csp6I	GTAC	3 cut(s)	221, 1178, 1290
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	4 cut(s)	622, 855, 1186, 1213
CviQI	GTAC	3 cut(s)	221, 1178, 1290
DdeI	CTNAG	7 cut(s)	270, 393, 835, 944, 960, 1122, 1284
DpnI	GATC	5 cut(s)	12, 73, 246, 769, 793
DpnII	GATC	5 cut(s)	10, 71, 244, 767, 791
Eam1104I	CTCTTC	1 cut(s)	871
EarI	CTCTTC	1 cut(s)	871
Eco24I	GRGCYC	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	886
Eco57I	CTGAAG	2 cut(s)	936, 1275
Eco81I	CCTNAGG	1 cut(s)	270
EcoRI	GAATTC	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	886
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	4 cut(s)	625, 858, 1189, 1216
FatI	CATG	4 cut(s)	621, 854, 1185, 1212
FauI	CCCGC	1 cut(s)	1083
FauNDI	CATATG	1 cut(s)	45
FokI	GGATG	3 cut(s)	893, 923, 1092
FriOI	GRGCYC	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	2 cut(s)	37, 657
HaeIII	GGCC	1 cut(s)	706
HapII	CCGG	3 cut(s)	723, 789, 795
HgaI	GACGC	1 cut(s)	1273
Hin1II	CATG	4 cut(s)	625, 858, 1189, 1216
HincII	GTYRAC	1 cut(s)	1231
HindII	GTYRAC	1 cut(s)	1231
HindIII	AAGCTT	1 cut(s)	1003
HpaII	CCGG	3 cut(s)	723, 789, 795
HphI	GGTGA	2 cut(s)	206, 1141
Hpy166II	GTNNAC	2 cut(s)	1231, 1290
Hpy188I	TCNGA	7 cut(s)	10, 231, 441, 635, 955, 963, 1273
Hpy188III	TCNNGA	4 cut(s)	779, 795, 1058, 1261
Hpy8I	GTNNAC	2 cut(s)	1231, 1290
HpyAV	CCTTC	4 cut(s)	136, 455, 806, 1256
HpyCH4IV	ACGT	2 cut(s)	719, 1292
HpyCH4V	TGCA	3 cut(s)	611, 1051, 1208
HpyF3I	CTNAG	7 cut(s)	270, 393, 835, 944, 960, 1122, 1284
HpySE526I	ACGT	2 cut(s)	719, 1292
Hsp92II	CATG	4 cut(s)	625, 858, 1189, 1216
Kpn2I	TCCGGA	1 cut(s)	794
Kzo9I	GATC	5 cut(s)	10, 71, 244, 767, 791
LmnI	GCTCC	2 cut(s)	334, 464
LweI	GCATC	2 cut(s)	476, 671
MaeII	ACGT	2 cut(s)	719, 1292
MaeIII	GTNAC	3 cut(s)	238, 526, 821
MalI	GATC	5 cut(s)	12, 73, 246, 769, 793
MboI	GATC	5 cut(s)	10, 71, 244, 767, 791
MboII	GAAGA	9 cut(s)	5, 121, 224, 408, 668, 700, 858, 872, 1146
MflI	RGATCY	2 cut(s)	10, 791
MhlI	GDGCHC	1 cut(s)	126
MlyI	GAGTC	4 cut(s)	14, 379, 742, 857
MnlI	CCTC	8 cut(s)	197, 516, 611, 791, 996, 1119, 1119, 1152
MroI	TCCGGA	1 cut(s)	794
MroXI	GAANNNNTTC	1 cut(s)	692
MseI	TTAA	1 cut(s)	1001
MspCI	CTTAAG	1 cut(s)	1000
MspI	CCGG	3 cut(s)	723, 789, 795
Mva1269I	GAATGC	1 cut(s)	768
NdeI	CATATG	1 cut(s)	45
NdeII	GATC	5 cut(s)	10, 71, 244, 767, 791
NlaIII	CATG	4 cut(s)	625, 858, 1189, 1216
NlaIV	GGNNCC	2 cut(s)	267, 793
NspI	RCATGY	1 cut(s)	1216
NspV	TTCGAA	1 cut(s)	419
PciI	ACATGT	1 cut(s)	1212
PctI	GAATGC	1 cut(s)	768
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	6 cut(s)	295, 436, 538, 1061, 1078, 1143
PflFI	GACNNNGTC	1 cut(s)	1267
Ple19I	CGATCG	1 cut(s)	770
PleI	GAGTC	4 cut(s)	13, 378, 741, 857
PpsI	GAGTC	4 cut(s)	13, 378, 741, 857
Ppu21I	YACGTR	1 cut(s)	1293
PscI	ACATGT	1 cut(s)	1212
PspFI	CCCAGC	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	267, 793
PspPI	GGNCC	1 cut(s)	704
PstI	CTGCAG	1 cut(s)	1210
PstNI	CAGNNNCTG	1 cut(s)	1267
PsuI	RGATCY	2 cut(s)	10, 791
PsyI	GACNNNGTC	1 cut(s)	1267
PvuI	CGATCG	1 cut(s)	770
RsaI	GTAC	3 cut(s)	222, 1179, 1291
RsaNI	GTAC	3 cut(s)	221, 1178, 1290
SaqAI	TTAA	1 cut(s)	1001
Sau3AI	GATC	5 cut(s)	10, 71, 244, 767, 791
Sau96I	GGNCC	1 cut(s)	704
SchI	GAGTC	4 cut(s)	14, 379, 742, 857
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	2 cut(s)	476, 671
SfcI	CTRYAG	1 cut(s)	1206
SfuI	TTCGAA	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	1000
SmoI	CTYRAG	1 cut(s)	1000
SsiI	CCGC	3 cut(s)	64, 425, 1090
SspI	AATATT	1 cut(s)	589
TaiI	ACGT	2 cut(s)	722, 1295
TaqI	TCGA	7 cut(s)	70, 172, 419, 536, 770, 1081, 1111
TfiI	GAWTC	6 cut(s)	295, 436, 538, 1061, 1078, 1143
Tru1I	TTAA	1 cut(s)	1001
Tru9I	TTAA	1 cut(s)	1001
TscAI	CASTG	2 cut(s)	1153, 1210
TspDTI	ATGAA	7 cut(s)	62, 297, 441, 474, 527, 669, 843
TspRI	CASTG	2 cut(s)	1153, 1210
Tth111I	GACNNNGTC	1 cut(s)	1267
Vha464I	CTTAAG	1 cut(s)	1000
XapI	RAATTY	5 cut(s)	113, 162, 408, 628, 1042
XceI	RCATGY	1 cut(s)	1216
XmnI	GAANNNNTTC	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.