Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Forward (+)

36132153 .. 36135817

Gene Structure 3665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43280.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCAATTGGCAGTGGCAGGGTATGCTGCATTGAGAGGCATGGGAAATGTTGGAGCGAGTAATGGCACTAATGAAGACTCATCTTTTTCTCCTGCAAGCAGATTGAAGAACTTCTCATCAGGGCCACCATCATCTACGTCCAGCATGATGAGTCCAATTTCCGAAGTTGGGGAAAAAAGAATGAGATCAAACAATCAAGACCGCACCGGTGGTGGGTTTAGTGAAGGTCGTGGTAACAATTATGTCTCAGGATTCCCCATGGGTTCTTGGGAAGACTCTTCTCTTTTGGCGGATGATATCATTGGTTCAACTAACTTTAGAGATGATGATGATGATGTGAAAACGATTACTGGTCTAAGTGCTTCAGAAACTCAGAATATGGAAGCAAGAGGTCGCCCCTTGGCTCATCACCTGAGCTTGCCAAAAACTTCAGCAGAAATGGCTGCCATTGAAAATTTCTTGCAGTTCCAAGATTCTGTGCCTTGTAAGATTCGAGCAAAGCGGGGTTGTGCTACGCACCCTAGAAGCATTGCTGAGAGGGTCAGAAGAACCCGAATCAGTGAACGAATGAGGAAACTACAAGAGCTTGTACCTAACATGGACAAGCAAACCAACACTGCAGACATGTTAGATTTGGCTGTTGACTACATCAAAAACCTTCAAACTGAAGTCCAGACACTGTCAGAAGCTCGTGCTAAGTGTACATGTTCAAACCAGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

242

Amino Acids

26.31

Weight (kDa)

6.84

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	366 - 411	1.7e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	202, 290, 502
AcsI	RAATTY	1 cut(s)	454
AcuI	CTGAAG	3 cut(s)	348, 414, 687
AfaI	GTAC	2 cut(s)	591, 703
AfiI	CCNNNNNNNGG	2 cut(s)	168, 213
AflIII	ACRYGT	2 cut(s)	624, 704
AgeI	ACCGGT	1 cut(s)	206
AgsI	TTSAA	5 cut(s)	106, 309, 452, 662, 711
AluBI	AGCT	3 cut(s)	417, 586, 689
AluI	AGCT	3 cut(s)	417, 586, 689
Alw26I	GTCTC	1 cut(s)	250
AlwNI	CAGNNNCTG	1 cut(s)	679
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	26, 443, 718
ApoI	RAATTY	1 cut(s)	454
AsiGI	ACCGGT	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	401
BauI	CACGAG	1 cut(s)	690
BbsI	GAAGAC	2 cut(s)	81, 279
BbvI	GCAGC	2 cut(s)	13, 430
BccI	CCATC	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	618
BisI	GCNGC	3 cut(s)	27, 444, 719
BlsI	GCNGC	3 cut(s)	28, 445, 720
BmgT120I	GGNCC	1 cut(s)	122
BpiI	GAAGAC	2 cut(s)	81, 279
Bpu10I	CCTNAGC	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	258, 399
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 213
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	258, 399
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	168, 213
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	4 cut(s)	261, 386, 404, 525
BseNI	ACTGG	1 cut(s)	355
BseXI	GCAGC	2 cut(s)	13, 430
BshFI	GGCC	1 cut(s)	124
BshTI	ACCGGT	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	168, 213
BsmAI	GTCTC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	701
Bsp143I	GATC	1 cut(s)	185
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	3 cut(s)	202, 290, 502
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	4 cut(s)	260, 385, 405, 526
BspMAI	CTGCAG	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	528
BsrFI	RCCGGY	1 cut(s)	206
BsrGI	TGTACA	1 cut(s)	701
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	258, 399
BssMI	GATC	1 cut(s)	185
BssSI	CACGAG	1 cut(s)	690
BssT1I	CCWWGG	2 cut(s)	258, 399
Bst2BI	CACGAG	1 cut(s)	690
Bst4CI	ACNGT	1 cut(s)	681
Bst6I	CTCTTC	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstAUI	TGTACA	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	97, 419
BstDEI	CTNAG	6 cut(s)	247, 356, 372, 413, 534, 696
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	1 cut(s)	188
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 440
BstNSI	RCATGY	2 cut(s)	628, 708
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	2 cut(s)	13, 430
BstV2I	GAAGAC	2 cut(s)	81, 279
BsuRI	GGCC	1 cut(s)	124
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	2 cut(s)	18, 615
BtsIMutI	CAGTG	4 cut(s)	18, 565, 615, 677
Cac8I	GCNNGC	2 cut(s)	97, 419
CaiI	CAGNNNCTG	1 cut(s)	679
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	590, 702
CspAI	ACCGGT	1 cut(s)	206
CviAII	CATG	6 cut(s)	40, 145, 259, 598, 625, 705
CviJI	RGCY	7 cut(s)	124, 404, 417, 443, 586, 638, 689
CviKI_1	RGCY	7 cut(s)	124, 404, 417, 443, 586, 638, 689
CviQI	GTAC	2 cut(s)	590, 702
DdeI	CTNAG	6 cut(s)	247, 356, 372, 413, 534, 696
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
EciI	GGCGGA	1 cut(s)	305
Eco130I	CCWWGG	2 cut(s)	258, 399
Eco32I	GATATC	1 cut(s)	298
Eco57I	CTGAAG	3 cut(s)	348, 414, 687
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	258, 399
ErhI	CCWWGG	2 cut(s)	258, 399
FaeI	CATG	6 cut(s)	43, 148, 262, 601, 628, 708
FaiI	YATR	9 cut(s)	24, 41, 146, 243, 260, 380, 599, 626, 706
FatI	CATG	6 cut(s)	39, 144, 258, 597, 624, 704
FauI	CCCGC	1 cut(s)	495
Fnu4HI	GCNGC	3 cut(s)	27, 444, 719
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	3 cut(s)	27, 444, 719
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	3 cut(s)	27, 444, 719
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	6 cut(s)	43, 148, 262, 601, 628, 708
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	7 cut(s)	77, 151, 252, 275, 473, 490, 555
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	3 cut(s)	563, 643, 702
Hpy188I	TCNGA	5 cut(s)	163, 367, 375, 545, 685
Hpy188III	TCNNGA	3 cut(s)	197, 249, 673
Hpy8I	GTNNAC	3 cut(s)	563, 643, 702
HpyAV	CCTTC	2 cut(s)	218, 668
HpyCH4III	ACNGT	1 cut(s)	681
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	5 cut(s)	4, 29, 95, 463, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 440
HpyF3I	CTNAG	6 cut(s)	247, 356, 372, 413, 534, 696
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	6 cut(s)	43, 148, 262, 601, 628, 708
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	9 cut(s)	3, 105, 105, 154, 220, 234, 336, 425, 686
Lsp1109I	GCAGC	2 cut(s)	13, 430
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	5 cut(s)	86, 118, 270, 284, 558
MfeI	CAATTG	1 cut(s)	5
MluCI	AATT	4 cut(s)	5, 156, 238, 454
MlyI	GAGTC	3 cut(s)	71, 160, 269
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	4 cut(s)	29, 383, 531, 564
MroXI	GAANNNNTTC	1 cut(s)	110
MspI	CCGG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	23, 440
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	6 cut(s)	43, 148, 262, 601, 628, 708
NspI	RCATGY	2 cut(s)	628, 708
PciI	ACATGT	2 cut(s)	624, 704
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	4 cut(s)	252, 473, 490, 555
PflFI	GACNNNGTC	1 cut(s)	679
PinAI	ACCGGT	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	28, 445, 720
PleI	GAGTC	3 cut(s)	71, 159, 269
PpsI	GAGTC	3 cut(s)	71, 159, 269
PscI	ACATGT	2 cut(s)	624, 704
PspPI	GGNCC	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	679
PsyI	GACNNNGTC	1 cut(s)	679
RsaI	GTAC	2 cut(s)	591, 703
RsaNI	GTAC	2 cut(s)	590, 702
SatI	GCNGC	3 cut(s)	27, 444, 719
Sau3AI	GATC	1 cut(s)	185
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	3 cut(s)	71, 160, 269
SetI	ASST	9 cut(s)	140, 229, 394, 414, 419, 588, 595, 660, 691
SfcI	CTRYAG	1 cut(s)	618
SgrAI	CRCCGGYG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	5, 156, 238, 454
SsiI	CCGC	3 cut(s)	202, 290, 502
SspMI	CTAG	1 cut(s)	522
StyI	CCWWGG	2 cut(s)	258, 399
TaaI	ACNGT	1 cut(s)	681
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	1 cut(s)	493
TasI	AATT	4 cut(s)	5, 156, 238, 454
TatI	WGTACW	1 cut(s)	701
TfiI	GAWTC	4 cut(s)	252, 473, 490, 555
TscAI	CASTG	4 cut(s)	18, 565, 622, 684
TseI	GCWGC	3 cut(s)	26, 443, 718
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	4 cut(s)	18, 565, 622, 684
Tth111I	GACNNNGTC	1 cut(s)	679
XapI	RAATTY	1 cut(s)	454
XceI	RCATGY	2 cut(s)	628, 708
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.