Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Forward (+)

86017190 .. 86019204

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG509200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGAGTCAGATCTTCAGCAGCCACATCATAAAACCCAGCAGCATATGAACTCCAGCTTGTTGCGGTATCGATCAGCACCGAGTTCTTATTTCGCAAATGTTTTGGACACAGAATTCAATGAGCCCTTCTTCAACCGAGCCACAAGCCCCGAAACTGAGCGAATTTTGGCTCGATTTATGAGTAGTCAAGGTGGTGATGGTGGAGGAACAGAAGAAATTGTACCACATCAGAAAGTAGCAACAGATCAGCAACCACAATTTTTGGTGCCTAAGGTGGATAATGAAGCAGCAATGATTCAACAACAACAGCAGCAGCAGGAGCAACAGCAACAACAGCAGCAGCAGCAGAGTCAGATAAACAACTATACATCTCAGGGCTTTTACCAAATTCCATCTTCGAAACCGCCTTTGCCGAATCAGAATATGGCTTCATCTAATGAAGGAGCATCTGCTGCTGCTTATCCAATGGGGTCAAATCAGTTGCCTCCAATGAAAACTGGTGGTGTAACTCACTCGAATCTTATTAGGCATAGTAGCTCTCCTGCTGGACTTTTCGCCAATATCAATATTGATGTGGCAGGGTATGCTGCATTGAGAGGCATGGGAAATTTCGGAGTGAGTAATAGCACCAATGAAGAAGCATCATTTTCTCCTGCAAGCAGGTTGAAGAACTTCTCATCAGGGCCACCACCATCTACGTCCGGCATAATGAGTCCAATTTCCCAAATTGGGGAGAAAAGAATGCGATCGAATAATCAAGAACCCACTGGATCTGGAGGTCGGTTTAGTGAAGGTCATAGTAACAATTATGTCTCAGGTTTCCCCATTGGTTCATGGGAAGACTCTTCTCTTTTGGGGGATGATATCATTGGTTCAACTAGCTTTAGGGATGATGATGATGATGTGAAAACAATTACTGGTCTAAGTGCTTCAGAAACTCAGAATATGGAAGCAAGAAGTCGCCCTCTGGCTCATCACTTAAGCTTGCCAAAAACATCAGCAGAAATGGCTGCCATTGAAAATTTCTTGCAGTTTCAAGATTCTGTGCCTTGTAAGATTCGAGCAAAGCGGGGTTGTGCCACACATCCTCGAAGCATTGCTGAGAGGGTGAGAAGAACCCGAATCAGTGAAAGAATGAGGAAACTACAAGAGCTTGTACCTAACATGGACAAGCAAACCAACACTGCAGACATGTTAGATTTGGCTGTTGACTACATCAAAGACCTTCAAACTGAAGTCCAGACGCTGTCAGAAGCTCGTGCTAAGTGTACGTGTTCAATCAAGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

430

Amino Acids

47.31

Weight (kDa)

6.09

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	365 - 410	9.2e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	651
AccB1I	GGYRCC	1 cut(s)	265
AciI	CCGC	3 cut(s)	64, 404, 1069
AclWI	GGATC	1 cut(s)	778
AcsI	RAATTY	5 cut(s)	113, 162, 387, 607, 1021
AcuI	CTGAAG	2 cut(s)	915, 1254
AfaI	GTAC	3 cut(s)	222, 1158, 1270
AfiI	CCNNNNNNNGG	2 cut(s)	729, 730
AflII	CTTAAG	1 cut(s)	979
AflIII	ACRYGT	2 cut(s)	1191, 1271
AgsI	TTSAA	9 cut(s)	118, 133, 299, 667, 876, 1019, 1037, 1229, 1278
AluBI	AGCT	6 cut(s)	57, 537, 882, 984, 1153, 1256
AluI	AGCT	6 cut(s)	57, 537, 882, 984, 1153, 1256
Alw26I	GTCTC	1 cut(s)	817
AlwI	GGATC	1 cut(s)	778
AlwNI	CAGNNNCTG	1 cut(s)	1246
AoxI	GGCC	1 cut(s)	683
ApoI	RAATTY	5 cut(s)	113, 162, 387, 607, 1021
Asp700I	GAANNNNTTC	1 cut(s)	671
AspS9I	GGNCC	1 cut(s)	683
AsuHPI	GGTGA	2 cut(s)	206, 1120
AsuII	TTCGAA	1 cut(s)	398
AxyI	CCTNAGG	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	126
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BauI	CACGAG	1 cut(s)	1257
BbsI	GAAGAC	1 cut(s)	846
BccI	CCATC	3 cut(s)	191, 400, 700
BcoDI	GTCTC	1 cut(s)	817
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	1 cut(s)	1185
BfrI	CTTAAG	1 cut(s)	979
BfuAI	ACCTGC	1 cut(s)	651
BglII	AGATCT	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	683
BmiI	GGNNCC	1 cut(s)	267
BmsI	GCATC	2 cut(s)	455, 650
BpiI	GAAGAC	1 cut(s)	846
BpmI	CTGGAG	2 cut(s)	37, 795
Bpu14I	TTCGAA	1 cut(s)	398
Bsa29I	ATCGAT	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	1272
Bsc4I	CCNNNNNNNGG	2 cut(s)	729, 730
Bse1I	ACTGG	3 cut(s)	502, 772, 922
Bse21I	CCTNAGG	1 cut(s)	270
Bse3DI	GCAATG	2 cut(s)	297, 1095
BseCI	ATCGAT	1 cut(s)	70
BseGI	GGATG	3 cut(s)	865, 895, 1084
BseLI	CCNNNNNNNGG	2 cut(s)	729, 730
BseMI	GCAATG	2 cut(s)	297, 1095
BseMII	CTCAG	5 cut(s)	147, 386, 828, 953, 1092
BseNI	ACTGG	3 cut(s)	502, 772, 922
BseYI	CCCAGC	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	749
BshFI	GGCC	1 cut(s)	685
BshNI	GGYRCC	1 cut(s)	265
BshVI	ATCGAT	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	749
BsiSI	CCGG	1 cut(s)	702
BslI	CCNNNNNNNGG	2 cut(s)	729, 730
BsmAI	GTCTC	1 cut(s)	817
BsmI	GAATGC	1 cut(s)	747
BsnI	GGCC	1 cut(s)	685
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	5 cut(s)	10, 71, 244, 746, 770
BspACI	CCGC	3 cut(s)	64, 404, 1069
BspANI	GGCC	1 cut(s)	685
BspCNI	CTCAG	5 cut(s)	148, 385, 827, 952, 1093
BspDI	ATCGAT	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	1189
BspMI	ACCTGC	1 cut(s)	651
BspPI	GGATC	1 cut(s)	778
BspT104I	TTCGAA	1 cut(s)	398
BspT107I	GGYRCC	1 cut(s)	265
BspTI	CTTAAG	1 cut(s)	979
BsrDI	GCAATG	2 cut(s)	297, 1095
BsrI	ACTGG	3 cut(s)	502, 772, 922
BssMI	GATC	5 cut(s)	10, 71, 244, 746, 770
BssSI	CACGAG	1 cut(s)	1257
Bst2BI	CACGAG	1 cut(s)	1257
Bst6I	CTCTTC	1 cut(s)	850
BstAFI	CTTAAG	1 cut(s)	979
BstAPI	GCANNNNNTGC	2 cut(s)	452, 584
BstBAI	YACGTR	1 cut(s)	1272
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	658, 986
BstDEI	CTNAG	8 cut(s)	156, 270, 372, 814, 923, 939, 1101, 1263
BstF5I	GGATG	3 cut(s)	865, 895, 1084
BstKTI	GATC	5 cut(s)	13, 74, 247, 749, 773
BstMAI	GTCTC	1 cut(s)	817
BstMBI	GATC	5 cut(s)	10, 71, 244, 746, 770
BstMCI	CGRYCG	1 cut(s)	749
BstMWI	GCNNNNNNNGC	6 cut(s)	319, 334, 343, 452, 584, 1007
BstNSI	RCATGY	1 cut(s)	1195
BstSFI	CTRYAG	1 cut(s)	1185
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	2 cut(s)	10, 770
BstYI	RGATCY	2 cut(s)	10, 770
Bsu15I	ATCGAT	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	685
BsuTUI	ATCGAT	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	865, 895, 1084
BtsI	GCAGTG	1 cut(s)	1182
BtsIMutI	CAGTG	3 cut(s)	765, 1132, 1182
BveI	ACCTGC	1 cut(s)	651
Cac8I	GCNNGC	2 cut(s)	658, 986
CaiI	CAGNNNCTG	1 cut(s)	1246
Cfr13I	GGNCC	1 cut(s)	683
ClaI	ATCGAT	1 cut(s)	70
CseI	GACGC	1 cut(s)	1252
Csp6I	GTAC	3 cut(s)	221, 1157, 1269
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	4 cut(s)	601, 834, 1165, 1192
CviQI	GTAC	3 cut(s)	221, 1157, 1269
DdeI	CTNAG	8 cut(s)	156, 270, 372, 814, 923, 939, 1101, 1263
DpnI	GATC	5 cut(s)	12, 73, 246, 748, 772
DpnII	GATC	5 cut(s)	10, 71, 244, 746, 770
Eam1104I	CTCTTC	1 cut(s)	850
EarI	CTCTTC	1 cut(s)	850
Eco24I	GRGCYC	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	865
Eco57I	CTGAAG	2 cut(s)	915, 1254
Eco81I	CCTNAGG	1 cut(s)	270
EcoRI	GAATTC	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	865
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	4 cut(s)	604, 837, 1168, 1195
FatI	CATG	4 cut(s)	600, 833, 1164, 1191
FauI	CCCGC	1 cut(s)	1062
FauNDI	CATATG	1 cut(s)	45
FokI	GGATG	3 cut(s)	872, 902, 1071
FriOI	GRGCYC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	879
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	2 cut(s)	37, 795
HaeIII	GGCC	1 cut(s)	685
HapII	CCGG	1 cut(s)	702
HgaI	GACGC	1 cut(s)	1252
Hin1II	CATG	4 cut(s)	604, 837, 1168, 1195
HincII	GTYRAC	1 cut(s)	1210
HindII	GTYRAC	1 cut(s)	1210
HindIII	AAGCTT	1 cut(s)	982
HpaII	CCGG	1 cut(s)	702
HphI	GGTGA	2 cut(s)	206, 1120
Hpy166II	GTNNAC	2 cut(s)	1210, 1269
Hpy188I	TCNGA	8 cut(s)	10, 231, 354, 420, 614, 934, 942, 1252
Hpy188III	TCNNGA	4 cut(s)	758, 774, 1037, 1240
Hpy8I	GTNNAC	2 cut(s)	1210, 1269
HpyAV	CCTTC	4 cut(s)	136, 434, 785, 1235
HpyCH4IV	ACGT	2 cut(s)	698, 1271
HpyCH4V	TGCA	4 cut(s)	590, 656, 1030, 1187
HpyF10VI	GCNNNNNNNGC	6 cut(s)	319, 334, 343, 452, 584, 1007
HpyF3I	CTNAG	8 cut(s)	156, 270, 372, 814, 923, 939, 1101, 1263
HpySE526I	ACGT	2 cut(s)	698, 1271
Hsp92II	CATG	4 cut(s)	604, 837, 1168, 1195
Kzo9I	GATC	5 cut(s)	10, 71, 244, 746, 770
LmnI	GCTCC	2 cut(s)	319, 443
LweI	GCATC	2 cut(s)	455, 650
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	2 cut(s)	698, 1271
MaeIII	GTNAC	2 cut(s)	505, 800
MalI	GATC	5 cut(s)	12, 73, 246, 748, 772
MboI	GATC	5 cut(s)	10, 71, 244, 746, 770
MboII	GAAGA	9 cut(s)	5, 121, 224, 387, 647, 679, 837, 851, 1125
MflI	RGATCY	2 cut(s)	10, 770
MhlI	GDGCHC	1 cut(s)	126
MlyI	GAGTC	4 cut(s)	14, 358, 721, 836
MnlI	CCTC	8 cut(s)	197, 495, 590, 770, 975, 1098, 1098, 1131
MroXI	GAANNNNTTC	1 cut(s)	671
MseI	TTAA	1 cut(s)	980
MspCI	CTTAAG	1 cut(s)	979
MspI	CCGG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	747
MwoI	GCNNNNNNNGC	6 cut(s)	319, 334, 343, 452, 584, 1007
NdeI	CATATG	1 cut(s)	45
NdeII	GATC	5 cut(s)	10, 71, 244, 746, 770
NlaIII	CATG	4 cut(s)	604, 837, 1168, 1195
NlaIV	GGNNCC	1 cut(s)	267
NspI	RCATGY	1 cut(s)	1195
NspV	TTCGAA	1 cut(s)	398
PciI	ACATGT	1 cut(s)	1191
PctI	GAATGC	1 cut(s)	747
PdmI	GAANNNNTTC	1 cut(s)	671
PfeI	GAWTC	6 cut(s)	295, 415, 517, 1040, 1057, 1122
PflFI	GACNNNGTC	1 cut(s)	1246
Ple19I	CGATCG	1 cut(s)	749
PleI	GAGTC	4 cut(s)	13, 357, 720, 836
PpsI	GAGTC	4 cut(s)	13, 357, 720, 836
Ppu21I	YACGTR	1 cut(s)	1272
PscI	ACATGT	1 cut(s)	1191
PspFI	CCCAGC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	683
PstI	CTGCAG	1 cut(s)	1189
PstNI	CAGNNNCTG	1 cut(s)	1246
PsuI	RGATCY	2 cut(s)	10, 770
PsyI	GACNNNGTC	1 cut(s)	1246
PvuI	CGATCG	1 cut(s)	749
RsaI	GTAC	3 cut(s)	222, 1158, 1270
RsaNI	GTAC	3 cut(s)	221, 1157, 1269
SaqAI	TTAA	1 cut(s)	980
Sau3AI	GATC	5 cut(s)	10, 71, 244, 746, 770
Sau96I	GGNCC	1 cut(s)	683
SchI	GAGTC	4 cut(s)	14, 358, 721, 836
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	2 cut(s)	455, 650
SfcI	CTRYAG	1 cut(s)	1185
SfuI	TTCGAA	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	979
SmoI	CTYRAG	1 cut(s)	979
SsiI	CCGC	3 cut(s)	64, 404, 1069
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	1 cut(s)	879
TaiI	ACGT	2 cut(s)	701, 1274
TaqI	TCGA	7 cut(s)	70, 172, 398, 515, 749, 1060, 1090
TfiI	GAWTC	6 cut(s)	295, 415, 517, 1040, 1057, 1122
Tru1I	TTAA	1 cut(s)	980
Tru9I	TTAA	1 cut(s)	980
TscAI	CASTG	3 cut(s)	772, 1132, 1189
TspDTI	ATGAA	7 cut(s)	62, 297, 420, 453, 506, 648, 822
TspRI	CASTG	3 cut(s)	772, 1132, 1189
Tth111I	GACNNNGTC	1 cut(s)	1246
Vha464I	CTTAAG	1 cut(s)	979
XapI	RAATTY	5 cut(s)	113, 162, 387, 607, 1021
XceI	RCATGY	1 cut(s)	1195
XmnI	GAANNNNTTC	1 cut(s)	671
XspI	CTAG	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.