Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Forward (+)

83561347 .. 83563348

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG530700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGAGTCAGATCTTCAGCAGCCACATCATAAAACCCAGCAGCATATGAACTCCAGCTTGTTGCGGTATCGATCAGCACCGAGTTCTTATTTCGCAAATGTTTTGGACACAGAATTCAATGAGCCCTTCTTCAACCGAGCCACTAGCCCCGAAACTGAGCGAATTTTAGCTCGATTTATGAGTAGTCAAGGTGGTGATGGTGGAGGAACAGAAGAAATTGTACCACATCAGAAAATAGTAACAGATCAGCAACCACAATTTTTGGTGCCTAAGGTGGATAACGAAGCAGCAATGATTCAACAACAACAACAACAGCAGCAGCAGCAGGAGCAACAGCAACAACAGCAGCAGCAGAGTCATATAAACAACTATACATCTCAGGGCTTTTACCAAATTCCATCTTCGAAACCGCCTTTGCCGAATCAGAATATGGCTTCATCTAATGAAGGAGCATCTGCTGCTGCTTATCCAATGGGGTCAAATCAGTTGCCTCCAATGAAAACTGGTGGTGTAACTCACTCGAATCTTGTTAGGCATAGTAGCTCTCCTGCTGGACTTTTCGCCGATATCAATATTGATGTGGCAGGGTATGCTGCATTGAGAGGCATGGGAAATTTCGGAGTGAGTAATAGCACCAATGAAGAAGCATCATTTTCTCCTGCAAGCAGGTTGAAGAACTTCTCATCAGGGCCACCACCATCTACGTCCGGCATAATGAGTCCAATTTCCCAAATTGGGGAGAAAAGAATGCGATCGAATAATCAAGAACCCACCGGATCCGGAGGTCGGTTTAGTGAAGGTCATAGTAACAATTATGTCTCAAGTTTCCCCATTGGTTCATGGGAAGACTCTTCTCTTTTGGCGGATGATATCATTGGTTCAACTAGCTTTAGGGATGATGATGATGATGTGAAAACAATTACTGGTCTAAGTGCTTCAGAAACTCAGAATATGGAAGCAAGAAGTCGCCCTCTGGCTCATCACTTAAGCTTGCCAAAAACATCAGCAGAAATGGCTGCCATTGAAAATTTCTTGCAGTTTCAAGATTCTGTGCCTTGTAAGATTCGAGCAAAGCGGGGTTGTGCCACACATCCTCGAAGCATTGCTGAGAGGGTGAGAAGAACCCGAATCAGTGAAAGAATGAGGAAACTACAAGAGCTTGTACCTAACATGGACAAGCAAACCAACACTGCAGACATGTTAGATTTGGCTGTTGACTACATCAAAGACCTTCAAACTGAAGTCCAGACGCTGTCAGAAGCTCGTGCTAAGTGTACGTGTTCAATCAAGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

432

Amino Acids

47.64

Weight (kDa)

6.02

Isoelectric Point (pI)

62.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	367 - 412	9.3e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	657
AccB1I	GGYRCC	1 cut(s)	265
AccIII	TCCGGA	1 cut(s)	779
AciI	CCGC	4 cut(s)	64, 410, 863, 1075
AclWI	GGATC	2 cut(s)	771, 784
AcsI	RAATTY	5 cut(s)	113, 162, 393, 613, 1027
AcuI	CTGAAG	2 cut(s)	921, 1260
AfaI	GTAC	3 cut(s)	222, 1164, 1276
AfiI	CCNNNNNNNGG	3 cut(s)	735, 736, 786
AflII	CTTAAG	1 cut(s)	985
AflIII	ACRYGT	2 cut(s)	1197, 1277
AgsI	TTSAA	9 cut(s)	118, 133, 299, 673, 882, 1025, 1043, 1235, 1284
AluBI	AGCT	7 cut(s)	57, 170, 543, 888, 990, 1159, 1262
AluI	AGCT	7 cut(s)	57, 170, 543, 888, 990, 1159, 1262
Alw26I	GTCTC	1 cut(s)	823
AlwI	GGATC	2 cut(s)	771, 784
AlwNI	CAGNNNCTG	1 cut(s)	1252
Aor13HI	TCCGGA	1 cut(s)	779
AoxI	GGCC	1 cut(s)	689
ApoI	RAATTY	5 cut(s)	113, 162, 393, 613, 1027
Asp700I	GAANNNNTTC	1 cut(s)	677
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	2 cut(s)	206, 1126
AsuII	TTCGAA	1 cut(s)	404
AxyI	CCTNAGG	1 cut(s)	270
BamHI	GGATCC	1 cut(s)	776
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	126
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BauI	CACGAG	1 cut(s)	1263
BbsI	GAAGAC	1 cut(s)	852
BccI	CCATC	3 cut(s)	191, 406, 706
BcoDI	GTCTC	1 cut(s)	823
BfaI	CTAG	2 cut(s)	144, 885
BfmI	CTRYAG	1 cut(s)	1191
BfrI	CTTAAG	1 cut(s)	985
BfuAI	ACCTGC	1 cut(s)	657
BglII	AGATCT	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	2 cut(s)	267, 778
BmsI	GCATC	2 cut(s)	461, 656
BpiI	GAAGAC	1 cut(s)	852
BpmI	CTGGAG	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	404
BpuEI	CTTGAG	1 cut(s)	805
Bsa29I	ATCGAT	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	1278
BsaWI	WCCGGW	2 cut(s)	773, 779
Bsc4I	CCNNNNNNNGG	3 cut(s)	735, 736, 786
Bse1I	ACTGG	2 cut(s)	508, 928
Bse21I	CCTNAGG	1 cut(s)	270
Bse3DI	GCAATG	2 cut(s)	297, 1101
BseAI	TCCGGA	1 cut(s)	779
BseCI	ATCGAT	1 cut(s)	70
BseGI	GGATG	3 cut(s)	871, 901, 1090
BseLI	CCNNNNNNNGG	3 cut(s)	735, 736, 786
BseMI	GCAATG	2 cut(s)	297, 1101
BseMII	CTCAG	4 cut(s)	147, 392, 959, 1098
BseNI	ACTGG	2 cut(s)	508, 928
BseYI	CCCAGC	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	755
BshFI	GGCC	1 cut(s)	691
BshNI	GGYRCC	1 cut(s)	265
BshVI	ATCGAT	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	755
BsiSI	CCGG	3 cut(s)	708, 774, 780
BslI	CCNNNNNNNGG	3 cut(s)	735, 736, 786
BsmAI	GTCTC	1 cut(s)	823
BsmI	GAATGC	1 cut(s)	753
BsnI	GGCC	1 cut(s)	691
Bsp119I	TTCGAA	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp13I	TCCGGA	1 cut(s)	779
Bsp143I	GATC	5 cut(s)	10, 71, 244, 752, 776
BspACI	CCGC	4 cut(s)	64, 410, 863, 1075
BspANI	GGCC	1 cut(s)	691
BspCNI	CTCAG	4 cut(s)	148, 391, 958, 1099
BspDI	ATCGAT	1 cut(s)	70
BspEI	TCCGGA	1 cut(s)	779
BspLI	GGNNCC	2 cut(s)	267, 778
BspMAI	CTGCAG	1 cut(s)	1195
BspMI	ACCTGC	1 cut(s)	657
BspPI	GGATC	2 cut(s)	771, 784
BspT104I	TTCGAA	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	265
BspTI	CTTAAG	1 cut(s)	985
BsrDI	GCAATG	2 cut(s)	297, 1101
BsrI	ACTGG	2 cut(s)	508, 928
BssMI	GATC	5 cut(s)	10, 71, 244, 752, 776
BssSI	CACGAG	1 cut(s)	1263
Bst2BI	CACGAG	1 cut(s)	1263
Bst6I	CTCTTC	1 cut(s)	856
BstAFI	CTTAAG	1 cut(s)	985
BstAPI	GCANNNNNTGC	2 cut(s)	458, 590
BstBAI	YACGTR	1 cut(s)	1278
BstBI	TTCGAA	1 cut(s)	404
BstC8I	GCNNGC	2 cut(s)	664, 992
BstDEI	CTNAG	7 cut(s)	156, 270, 378, 929, 945, 1107, 1269
BstF5I	GGATG	3 cut(s)	871, 901, 1090
BstKTI	GATC	5 cut(s)	13, 74, 247, 755, 779
BstMAI	GTCTC	1 cut(s)	823
BstMBI	GATC	5 cut(s)	10, 71, 244, 752, 776
BstMCI	CGRYCG	1 cut(s)	755
BstMWI	GCNNNNNNNGC	6 cut(s)	322, 328, 343, 458, 590, 1013
BstNSI	RCATGY	1 cut(s)	1201
BstSFI	CTRYAG	1 cut(s)	1191
BstV2I	GAAGAC	1 cut(s)	852
BstX2I	RGATCY	2 cut(s)	10, 776
BstYI	RGATCY	2 cut(s)	10, 776
Bsu15I	ATCGAT	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	691
BsuTUI	ATCGAT	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	871, 901, 1090
BtsI	GCAGTG	1 cut(s)	1188
BtsIMutI	CAGTG	2 cut(s)	1138, 1188
BveI	ACCTGC	1 cut(s)	657
Cac8I	GCNNGC	2 cut(s)	664, 992
CaiI	CAGNNNCTG	1 cut(s)	1252
Cfr13I	GGNCC	1 cut(s)	689
ClaI	ATCGAT	1 cut(s)	70
CseI	GACGC	1 cut(s)	1258
Csp6I	GTAC	3 cut(s)	221, 1163, 1275
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	4 cut(s)	607, 840, 1171, 1198
CviQI	GTAC	3 cut(s)	221, 1163, 1275
DdeI	CTNAG	7 cut(s)	156, 270, 378, 929, 945, 1107, 1269
DpnI	GATC	5 cut(s)	12, 73, 246, 754, 778
DpnII	GATC	5 cut(s)	10, 71, 244, 752, 776
Eam1104I	CTCTTC	1 cut(s)	856
EarI	CTCTTC	1 cut(s)	856
EciI	GGCGGA	1 cut(s)	878
Eco24I	GRGCYC	1 cut(s)	126
Eco32I	GATATC	2 cut(s)	568, 871
Eco57I	CTGAAG	2 cut(s)	921, 1260
Eco81I	CCTNAGG	1 cut(s)	270
EcoRI	GAATTC	1 cut(s)	113
EcoRV	GATATC	2 cut(s)	568, 871
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	4 cut(s)	610, 843, 1174, 1201
FatI	CATG	4 cut(s)	606, 839, 1170, 1197
FauI	CCCGC	1 cut(s)	1068
FauNDI	CATATG	1 cut(s)	45
FokI	GGATG	3 cut(s)	878, 908, 1077
FriOI	GRGCYC	1 cut(s)	126
FspBI	CTAG	2 cut(s)	144, 885
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	691
HapII	CCGG	3 cut(s)	708, 774, 780
HgaI	GACGC	1 cut(s)	1258
Hin1II	CATG	4 cut(s)	610, 843, 1174, 1201
HincII	GTYRAC	1 cut(s)	1216
HindII	GTYRAC	1 cut(s)	1216
HindIII	AAGCTT	1 cut(s)	988
HpaII	CCGG	3 cut(s)	708, 774, 780
HphI	GGTGA	2 cut(s)	206, 1126
Hpy166II	GTNNAC	2 cut(s)	1216, 1275
Hpy188I	TCNGA	7 cut(s)	10, 231, 426, 620, 940, 948, 1258
Hpy188III	TCNNGA	4 cut(s)	764, 780, 1043, 1246
Hpy8I	GTNNAC	2 cut(s)	1216, 1275
HpyAV	CCTTC	4 cut(s)	136, 440, 791, 1241
HpyCH4IV	ACGT	2 cut(s)	704, 1277
HpyCH4V	TGCA	4 cut(s)	596, 662, 1036, 1193
HpyF10VI	GCNNNNNNNGC	6 cut(s)	322, 328, 343, 458, 590, 1013
HpyF3I	CTNAG	7 cut(s)	156, 270, 378, 929, 945, 1107, 1269
HpySE526I	ACGT	2 cut(s)	704, 1277
Hsp92II	CATG	4 cut(s)	610, 843, 1174, 1201
Kpn2I	TCCGGA	1 cut(s)	779
Kzo9I	GATC	5 cut(s)	10, 71, 244, 752, 776
LmnI	GCTCC	2 cut(s)	328, 449
LweI	GCATC	2 cut(s)	461, 656
MaeI	CTAG	2 cut(s)	144, 885
MaeII	ACGT	2 cut(s)	704, 1277
MaeIII	GTNAC	3 cut(s)	238, 511, 806
MalI	GATC	5 cut(s)	12, 73, 246, 754, 778
MboI	GATC	5 cut(s)	10, 71, 244, 752, 776
MboII	GAAGA	9 cut(s)	5, 121, 224, 393, 653, 685, 843, 857, 1131
MflI	RGATCY	2 cut(s)	10, 776
MhlI	GDGCHC	1 cut(s)	126
MlyI	GAGTC	4 cut(s)	14, 364, 727, 842
MnlI	CCTC	8 cut(s)	197, 501, 596, 776, 981, 1104, 1104, 1137
MroI	TCCGGA	1 cut(s)	779
MroXI	GAANNNNTTC	1 cut(s)	677
MseI	TTAA	1 cut(s)	986
MspCI	CTTAAG	1 cut(s)	985
MspI	CCGG	3 cut(s)	708, 774, 780
Mva1269I	GAATGC	1 cut(s)	753
MwoI	GCNNNNNNNGC	6 cut(s)	322, 328, 343, 458, 590, 1013
NdeI	CATATG	1 cut(s)	45
NdeII	GATC	5 cut(s)	10, 71, 244, 752, 776
NlaIII	CATG	4 cut(s)	610, 843, 1174, 1201
NlaIV	GGNNCC	2 cut(s)	267, 778
NspI	RCATGY	1 cut(s)	1201
NspV	TTCGAA	1 cut(s)	404
PciI	ACATGT	1 cut(s)	1197
PctI	GAATGC	1 cut(s)	753
PdmI	GAANNNNTTC	1 cut(s)	677
PfeI	GAWTC	6 cut(s)	295, 421, 523, 1046, 1063, 1128
PflFI	GACNNNGTC	1 cut(s)	1252
Ple19I	CGATCG	1 cut(s)	755
PleI	GAGTC	4 cut(s)	13, 363, 726, 842
PpsI	GAGTC	4 cut(s)	13, 363, 726, 842
Ppu21I	YACGTR	1 cut(s)	1278
PscI	ACATGT	1 cut(s)	1197
PspFI	CCCAGC	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	267, 778
PspPI	GGNCC	1 cut(s)	689
PstI	CTGCAG	1 cut(s)	1195
PstNI	CAGNNNCTG	1 cut(s)	1252
PsuI	RGATCY	2 cut(s)	10, 776
PsyI	GACNNNGTC	1 cut(s)	1252
PvuI	CGATCG	1 cut(s)	755
RsaI	GTAC	3 cut(s)	222, 1164, 1276
RsaNI	GTAC	3 cut(s)	221, 1163, 1275
SaqAI	TTAA	1 cut(s)	986
Sau3AI	GATC	5 cut(s)	10, 71, 244, 752, 776
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	4 cut(s)	14, 364, 727, 842
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	2 cut(s)	461, 656
SfcI	CTRYAG	1 cut(s)	1191
SfuI	TTCGAA	1 cut(s)	404
SmlI	CTYRAG	2 cut(s)	820, 985
SmoI	CTYRAG	2 cut(s)	820, 985
SsiI	CCGC	4 cut(s)	64, 410, 863, 1075
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	2 cut(s)	144, 885
TaiI	ACGT	2 cut(s)	707, 1280
TaqI	TCGA	7 cut(s)	70, 172, 404, 521, 755, 1066, 1096
TfiI	GAWTC	6 cut(s)	295, 421, 523, 1046, 1063, 1128
Tru1I	TTAA	1 cut(s)	986
Tru9I	TTAA	1 cut(s)	986
TscAI	CASTG	2 cut(s)	1138, 1195
TspDTI	ATGAA	6 cut(s)	62, 426, 459, 512, 654, 828
TspRI	CASTG	2 cut(s)	1138, 1195
Tth111I	GACNNNGTC	1 cut(s)	1252
Vha464I	CTTAAG	1 cut(s)	985
XapI	RAATTY	5 cut(s)	113, 162, 393, 613, 1027
XceI	RCATGY	1 cut(s)	1201
XmnI	GAANNNNTTC	1 cut(s)	677
XspI	CTAG	2 cut(s)	144, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.